Wall clock time and date at job start Tue Mar 31 2020 10:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.46889 * 2 1 4 4 C 1.42905 * 113.99778 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46728 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.46738 * 185.00163 * 5 4 3 7 7 N 1.46500 * 109.47177 * 65.00458 * 5 4 3 8 8 C 1.34781 * 120.00281 * 154.99540 * 7 5 4 9 9 O 1.21588 * 119.99716 * 359.97438 * 8 7 5 10 10 N 1.34768 * 120.00170 * 179.97438 * 8 7 5 11 11 C 1.47021 * 125.64956 * 359.69606 * 10 8 7 12 12 C 1.54333 * 107.26871 * 178.84819 * 11 10 8 13 13 C 1.55163 * 103.01987 * 338.13740 * 12 11 10 14 14 O 1.42894 * 111.00617 * 277.23616 * 13 12 11 15 15 C 1.50694 * 111.03650 * 153.39292 * 13 12 11 16 16 H 1.08002 * 120.00062 * 6.33946 * 15 13 12 17 17 C 1.37877 * 120.00265 * 186.33136 * 15 13 12 18 18 N 1.31519 * 119.99863 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 120.00567 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.46677 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46807 * 119.99784 * 19 17 15 22 22 H 1.48490 * 109.47420 * 240.00339 * 19 17 15 23 23 C 1.47426 * 125.65035 * 179.97438 * 10 8 7 24 24 C 1.52999 * 109.47451 * 304.99933 * 5 4 3 25 25 C 1.53002 * 109.46943 * 180.02562 * 24 5 4 26 26 C 1.52993 * 109.47268 * 300.00367 * 24 5 4 27 27 H 1.08997 * 109.47286 * 300.00017 * 1 2 3 28 28 H 1.09008 * 109.47201 * 60.00236 * 1 2 3 29 29 H 1.09001 * 109.47296 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47286 * 239.99983 * 2 1 3 31 31 H 1.08997 * 109.46848 * 120.00081 * 2 1 3 32 32 H 1.09000 * 109.47187 * 300.00233 * 4 3 2 33 33 H 1.09001 * 109.46558 * 60.00281 * 4 3 2 34 34 H 0.96998 * 119.99772 * 334.99750 * 7 5 4 35 35 H 1.09000 * 109.88147 * 298.39165 * 11 10 8 36 36 H 1.09006 * 109.88421 * 59.55789 * 11 10 8 37 37 H 1.09004 * 110.85276 * 219.67618 * 12 11 10 38 38 H 1.08997 * 110.51978 * 96.44634 * 12 11 10 39 39 H 0.96705 * 114.00169 * 173.64994 * 14 13 12 40 40 H 0.96996 * 120.00139 * 179.97438 * 18 17 15 41 41 H 1.09008 * 110.36616 * 322.93577 * 23 10 8 42 42 H 1.08998 * 110.36904 * 85.14310 * 23 10 8 43 43 H 1.09000 * 109.46961 * 60.00367 * 24 5 4 44 44 H 1.09000 * 109.47059 * 60.00345 * 25 24 5 45 45 H 1.09002 * 109.46816 * 180.02562 * 25 24 5 46 46 H 1.09000 * 109.47511 * 300.00080 * 25 24 5 47 47 H 1.09001 * 109.47333 * 59.99988 * 26 24 5 48 48 H 1.09002 * 109.47330 * 179.97438 * 26 24 5 49 49 H 1.09000 * 109.47130 * 299.99897 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8253 2.9384 -0.0001 6 1 4.9081 3.0254 -0.0893 7 7 3.3867 3.5614 1.2512 8 6 4.0180 4.6579 1.7156 9 8 4.9520 5.1297 1.0962 10 7 3.6142 5.2313 2.8664 11 6 2.5006 4.7708 3.7085 12 6 2.4294 5.7126 4.9292 13 6 3.8582 6.3146 4.9900 14 8 4.7579 5.4315 5.6627 15 6 3.8460 7.6713 5.6458 16 1 2.9365 8.0485 6.0895 17 6 4.9961 8.4310 5.6797 18 7 6.1037 7.9718 5.1392 19 14 4.9814 10.1125 6.4933 20 1 3.6226 10.3946 7.0217 21 1 5.9600 10.1305 7.6101 22 1 5.3498 11.1485 5.4953 23 6 4.2124 6.4277 3.4864 24 6 3.1579 3.6438 -1.1824 25 6 3.5529 5.1220 -1.1834 26 6 3.6159 2.9932 -2.4892 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.8333 0.9767 0.8908 33 1 3.8339 0.9765 -0.8892 34 1 2.6419 3.1848 1.7454 35 1 1.5674 4.8174 3.1471 36 1 2.6850 3.7493 4.0411 37 1 2.2075 5.1534 5.8382 38 1 1.6881 6.4947 4.7656 39 1 5.6810 5.7189 5.6409 40 1 6.9127 8.5063 5.1627 41 1 5.2939 6.4251 3.3502 42 1 3.7793 7.3326 3.0602 43 1 2.0750 3.5568 -1.0933 44 1 4.6358 5.2086 -1.2728 45 1 3.0771 5.6246 -2.0255 46 1 3.2269 5.5858 -0.2525 47 1 3.3349 1.9400 -2.4887 48 1 3.1402 3.4954 -3.3315 49 1 4.6988 3.0802 -2.5783 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592017766.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:39 Heat of formation + Delta-G solvation = -134.613999 kcal Electronic energy + Delta-G solvation = -28224.352753 eV Core-core repulsion = 24379.316953 eV Total energy + Delta-G solvation = -3845.035800 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.98637 -38.56282 -37.39203 -35.84555 -34.16265 -32.88494 -32.18906 -31.58612 -29.99488 -28.49342 -27.63754 -26.71017 -24.93182 -23.19274 -23.02192 -22.34968 -19.90553 -19.59163 -19.44578 -17.48084 -16.97764 -16.83309 -16.43027 -15.70496 -15.36164 -15.10262 -14.93909 -14.37179 -14.24236 -14.15381 -13.55209 -13.11476 -12.93002 -12.89575 -12.76940 -12.73436 -12.36038 -12.09707 -11.95510 -11.75080 -11.67553 -11.59212 -11.46088 -11.36479 -11.02664 -10.97457 -10.78353 -10.56122 -10.51490 -10.48793 -10.42667 -10.13983 -9.78177 -9.46146 -9.30578 -8.66484 -8.61926 -8.30140 -7.59980 -6.23749 -4.33309 3.18973 3.24129 3.31280 3.34622 3.46796 3.85981 4.29093 4.54992 4.69756 4.78618 4.85925 5.00353 5.03490 5.10495 5.16187 5.21341 5.30318 5.39953 5.43153 5.48201 5.64732 5.69490 5.71907 5.79082 5.83401 5.86200 5.98773 6.06613 6.07939 6.10185 6.18188 6.26288 6.52011 6.56708 6.76215 6.76602 6.89522 6.94677 7.01705 7.06911 7.29842 7.38867 7.76418 7.78990 8.08553 8.63887 8.72538 9.25626 9.34397 9.42423 10.83183 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.020673 B = 0.003339 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.114592 B = 8383.908894 C = 9159.419268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.382 6.382 4 C 0.053 3.947 5 C 0.175 3.825 6 H 0.097 0.903 7 N -0.743 5.743 8 C 0.717 3.283 9 O -0.593 6.593 10 N -0.629 5.629 11 C 0.106 3.894 12 C -0.116 4.116 13 C 0.248 3.752 14 O -0.583 6.583 15 C -0.537 4.537 16 H 0.066 0.934 17 C 0.071 3.929 18 N -0.891 5.891 19 Si 0.903 3.097 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 C 0.116 3.884 24 C -0.102 4.102 25 C -0.136 4.136 26 C -0.143 4.143 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.046 0.954 31 H 0.047 0.953 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.396 0.604 35 H 0.050 0.950 36 H 0.053 0.947 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.381 0.619 40 H 0.269 0.731 41 H 0.084 0.916 42 H 0.055 0.945 43 H 0.076 0.924 44 H 0.061 0.939 45 H 0.039 0.961 46 H 0.057 0.943 47 H 0.052 0.948 48 H 0.053 0.947 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.362 -14.420 -11.139 20.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.301 6.301 4 C -0.024 4.024 5 C 0.069 3.931 6 H 0.115 0.885 7 N -0.399 5.399 8 C 0.419 3.581 9 O -0.473 6.473 10 N -0.366 5.366 11 C -0.017 4.017 12 C -0.154 4.154 13 C 0.207 3.793 14 O -0.391 6.391 15 C -0.575 4.575 16 H 0.084 0.916 17 C -0.133 4.133 18 N -0.530 5.530 19 Si 0.730 3.270 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.006 4.006 24 C -0.122 4.122 25 C -0.193 4.193 26 C -0.201 4.201 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.230 0.770 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.230 0.770 40 H 0.079 0.921 41 H 0.103 0.897 42 H 0.073 0.927 43 H 0.094 0.906 44 H 0.080 0.920 45 H 0.058 0.942 46 H 0.076 0.924 47 H 0.071 0.929 48 H 0.073 0.927 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.120 -14.219 -11.576 20.053 hybrid contribution 0.356 0.775 0.504 0.991 sum -7.764 -13.445 -11.072 19.069 Atomic orbital electron populations 1.21734 0.93778 1.02079 1.03239 1.22441 0.95589 0.84016 0.99926 1.87919 1.20758 1.26078 1.95385 1.22885 0.81780 0.96828 1.00913 1.20865 0.99699 0.88812 0.83740 0.88482 1.45105 1.38159 1.30849 1.25819 1.15472 0.82235 0.80053 0.80308 1.90884 1.31389 1.65708 1.59274 1.47928 1.34964 1.31786 1.21915 1.21901 0.88868 0.98381 0.92579 1.22587 0.99042 0.97994 0.95746 1.19636 0.84980 0.87944 0.86730 1.86099 1.22125 1.52147 1.78758 1.21494 0.97006 1.00979 1.38027 0.91553 1.25080 0.95343 0.98579 0.94248 1.69735 1.00892 1.38439 1.43920 0.86367 0.78257 0.83263 0.79111 1.19615 1.20803 1.20801 1.23075 0.99555 0.83417 0.94568 1.21445 1.00890 0.96064 0.93757 1.21840 1.02001 0.94478 1.01027 1.21839 1.01207 1.00093 0.96987 0.91727 0.91901 0.91306 0.93602 0.93473 0.92700 0.91776 0.77019 0.93194 0.92854 0.90893 0.90514 0.76975 0.92112 0.89722 0.92672 0.90584 0.91953 0.94222 0.92364 0.92910 0.92743 0.92717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.28 37.16 0.38 -0.69 16 2 C 0.06 0.46 6.66 37.16 0.25 0.71 16 3 O -0.38 -4.05 9.19 -35.23 -0.32 -4.37 16 4 C 0.05 0.55 5.18 37.16 0.19 0.74 16 5 C 0.17 2.33 2.24 -67.93 -0.15 2.18 16 6 H 0.10 1.44 7.58 -51.93 -0.39 1.05 16 7 N -0.74 -11.65 4.91 -58.68 -0.29 -11.94 16 8 C 0.72 14.52 6.84 -86.92 -0.59 13.93 16 9 O -0.59 -13.85 13.72 5.29 0.07 -13.77 16 10 N -0.63 -13.19 3.33 -176.24 -0.59 -13.78 16 11 C 0.11 1.90 6.15 -3.06 -0.02 1.89 16 12 C -0.12 -2.32 6.13 -24.89 -0.15 -2.47 16 13 C 0.25 6.02 0.87 -89.63 -0.08 5.95 16 14 O -0.58 -14.92 13.16 -35.23 -0.46 -15.38 16 15 C -0.54 -14.04 8.27 -34.44 -0.28 -14.32 16 16 H 0.07 1.71 7.79 -52.49 -0.41 1.30 16 17 C 0.07 1.86 5.29 -17.82 -0.09 1.76 16 18 N -0.89 -23.97 10.69 55.43 0.59 -23.38 16 19 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 20 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 C 0.12 2.82 5.38 -2.54 -0.01 2.81 16 24 C -0.10 -1.31 2.49 -90.62 -0.23 -1.54 16 25 C -0.14 -2.11 7.72 37.16 0.29 -1.83 16 26 C -0.14 -1.48 8.84 37.15 0.33 -1.15 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.55 6.71 -51.93 -0.35 0.20 16 34 H 0.40 5.67 7.37 -40.82 -0.30 5.37 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 38 H 0.08 1.46 8.03 -51.93 -0.42 1.04 16 39 H 0.38 10.03 7.56 45.56 0.34 10.37 16 40 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 41 H 0.08 2.33 7.33 -51.92 -0.38 1.95 16 42 H 0.05 1.40 8.03 -51.93 -0.42 0.98 16 43 H 0.08 1.02 7.56 -51.93 -0.39 0.62 16 44 H 0.06 1.06 7.53 -51.93 -0.39 0.67 16 45 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.06 1.07 5.77 -51.93 -0.30 0.77 16 47 H 0.05 0.48 6.54 -51.93 -0.34 0.14 16 48 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 382.01 15.07 5.76 5.76 Total: -1.00 -29.50 382.01 -8.39 -37.89 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: -7.95 Total: 15.55 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: -0.18 Total: 7.96 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: -0.28 Total: -49.10 kcal Atomic # 8 Polarization: -32.82 SS G_CDS: -0.72 Total: -33.53 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -29.50 -8.39 -37.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592017766.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.727 kcal (2) G-P(sol) polarization free energy of solvation -29.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds