Wall clock time and date at job start Tue Mar 31 2020 10:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42898 * 109.47236 * 2 1 4 4 C 1.42897 * 114.00296 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47403 * 179.97438 * 4 3 2 6 6 H 1.09006 * 109.46804 * 185.15595 * 5 4 3 7 7 N 1.46492 * 109.47096 * 65.16052 * 5 4 3 8 8 C 1.34778 * 120.00479 * 155.00333 * 7 5 4 9 9 O 1.21589 * 119.99194 * 359.97438 * 8 7 5 10 10 N 1.34774 * 120.00509 * 179.97438 * 8 7 5 11 11 C 1.47018 * 125.64830 * 0.02711 * 10 8 7 12 12 C 1.54321 * 107.27433 * 181.01961 * 11 10 8 13 13 C 1.55157 * 102.93730 * 22.19100 * 12 11 10 14 14 O 1.42900 * 111.00748 * 82.57795 * 13 12 11 15 15 C 1.50709 * 111.00372 * 206.38633 * 13 12 11 16 16 H 1.07990 * 120.00121 * 124.20458 * 15 13 12 17 17 C 1.37882 * 119.99660 * 304.21118 * 15 13 12 18 18 N 1.31512 * 119.99837 * 173.22853 * 17 15 13 19 19 Si 1.86799 * 119.99947 * 353.21941 * 17 15 13 20 20 H 1.48499 * 109.46807 * 91.37825 * 19 17 15 21 21 H 1.48507 * 109.46877 * 211.37451 * 19 17 15 22 22 H 1.48495 * 109.47636 * 331.37472 * 19 17 15 23 23 C 1.47418 * 125.64906 * 179.71143 * 10 8 7 24 24 C 1.53001 * 109.47065 * 305.15675 * 5 4 3 25 25 C 1.53000 * 109.47022 * 182.22225 * 24 5 4 26 26 C 1.52999 * 109.47094 * 302.22367 * 24 5 4 27 27 H 1.08999 * 109.47112 * 299.99942 * 1 2 3 28 28 H 1.08998 * 109.46734 * 60.00276 * 1 2 3 29 29 H 1.08996 * 109.47282 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46977 * 239.99551 * 2 1 3 31 31 H 1.09003 * 109.47190 * 119.99741 * 2 1 3 32 32 H 1.09006 * 109.47186 * 59.99630 * 4 3 2 33 33 H 1.09007 * 109.47212 * 300.00198 * 4 3 2 34 34 H 0.97001 * 119.99868 * 334.99583 * 7 5 4 35 35 H 1.09003 * 109.87918 * 300.44148 * 11 10 8 36 36 H 1.08997 * 109.88331 * 61.59847 * 11 10 8 37 37 H 1.08995 * 110.71983 * 140.55022 * 12 11 10 38 38 H 1.08995 * 110.72264 * 263.65318 * 12 11 10 39 39 H 0.96699 * 114.00201 * 180.02562 * 14 13 12 40 40 H 0.96998 * 119.99963 * 179.97438 * 18 17 15 41 41 H 1.09004 * 110.37209 * 274.74923 * 23 10 8 42 42 H 1.08999 * 110.36782 * 37.07536 * 23 10 8 43 43 H 1.08997 * 109.46711 * 62.22152 * 24 5 4 44 44 H 1.08994 * 109.46877 * 52.90004 * 25 24 5 45 45 H 1.09000 * 109.46746 * 172.89804 * 25 24 5 46 46 H 1.08993 * 109.47071 * 292.89765 * 25 24 5 47 47 H 1.09002 * 109.47204 * 179.97438 * 26 24 5 48 48 H 1.08995 * 109.47373 * 300.00008 * 26 24 5 49 49 H 1.09005 * 109.47158 * 60.00135 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9384 -0.0012 6 1 4.9080 3.0254 -0.0940 7 7 3.3913 3.5601 1.2522 8 6 4.0242 4.6562 1.7155 9 8 4.9559 5.1285 1.0932 10 7 3.6244 5.2285 2.8683 11 6 2.5181 4.7631 3.7174 12 6 2.4140 5.7378 4.9093 13 6 3.1002 7.0207 4.3700 14 8 2.1914 7.7970 3.5868 15 6 3.6743 7.8406 5.4967 16 1 4.7209 8.1065 5.4921 17 6 2.8632 8.2510 6.5334 18 7 3.3869 8.8502 7.5804 19 14 1.0205 7.9561 6.4507 20 1 0.6991 6.6517 7.0835 21 1 0.3122 9.0440 7.1719 22 1 0.5852 7.9381 5.0311 23 6 4.2282 6.4210 3.4901 24 6 3.1539 3.6450 -1.1805 25 6 3.5922 5.1105 -1.2136 26 6 3.5641 2.9603 -2.4858 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.8333 0.9767 -0.8908 33 1 3.8341 0.9764 0.8892 34 1 2.6481 3.1831 1.7487 35 1 1.5873 4.7702 3.1503 36 1 2.7266 3.7562 4.0790 37 1 1.3709 5.9336 5.1574 38 1 2.9480 5.3466 5.7752 39 1 2.5756 8.6086 3.2279 40 1 2.8163 9.1393 8.3096 41 1 5.0820 6.1370 4.1053 42 1 4.5319 7.1353 2.7248 43 1 2.0712 3.5919 -1.0670 44 1 4.6807 5.1645 -1.1999 45 1 3.2164 5.5816 -2.1219 46 1 3.1916 5.6292 -0.3427 47 1 3.0854 3.4634 -3.3260 48 1 4.6468 3.0133 -2.5993 49 1 3.2518 1.9162 -2.4622 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592017767.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:40 Heat of formation + Delta-G solvation = -146.974529 kcal Electronic energy + Delta-G solvation = -28265.555331 eV Core-core repulsion = 24419.983538 eV Total energy + Delta-G solvation = -3845.571793 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.51645 -39.90695 -38.89280 -37.07913 -36.07478 -34.52915 -34.25614 -32.31968 -31.74532 -30.02935 -29.38034 -27.86856 -26.78560 -24.34880 -23.79597 -23.61109 -21.69539 -21.12080 -20.92433 -19.49553 -18.80885 -17.84771 -17.34073 -17.09235 -16.79438 -16.67627 -16.54680 -15.78973 -15.71928 -15.55874 -15.06719 -14.81593 -14.64248 -14.19191 -13.94766 -13.82919 -13.75291 -13.66215 -13.33102 -13.24550 -13.13223 -12.98540 -12.81517 -12.63011 -12.44611 -12.32627 -12.22486 -12.12771 -11.98238 -11.82728 -11.63959 -11.54262 -11.14583 -10.90946 -10.78229 -10.48566 -10.37290 -10.02484 -9.37321 -8.36561 -6.51471 1.36245 1.46608 1.65982 1.71300 2.19734 2.39337 2.73367 2.98873 3.06577 3.56676 3.71313 3.82500 3.92433 4.02832 4.13631 4.20200 4.24083 4.33555 4.38897 4.45881 4.49337 4.51900 4.56840 4.58144 4.65154 4.81277 4.82362 4.85300 4.94722 4.95587 5.03754 5.07286 5.09180 5.10584 5.16756 5.25498 5.33507 5.39763 5.42203 5.50823 5.53195 5.67652 6.08007 6.15474 6.29598 6.59876 7.04465 7.14401 7.28921 7.62034 8.77720 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.018158 B = 0.003591 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.629490 B = 7795.586172 C = 8641.225951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.052 3.948 3 O -0.399 6.399 4 C 0.060 3.940 5 C 0.170 3.830 6 H 0.086 0.914 7 N -0.725 5.725 8 C 0.718 3.282 9 O -0.625 6.625 10 N -0.632 5.632 11 C 0.113 3.887 12 C -0.124 4.124 13 C 0.216 3.784 14 O -0.574 6.574 15 C -0.551 4.551 16 H 0.039 0.961 17 C 0.040 3.960 18 N -0.934 5.934 19 Si 0.934 3.066 20 H -0.267 1.267 21 H -0.308 1.308 22 H -0.216 1.216 23 C 0.123 3.877 24 C -0.096 4.096 25 C -0.129 4.129 26 C -0.137 4.137 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.086 0.914 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.088 0.912 33 H 0.062 0.938 34 H 0.406 0.594 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.374 0.626 40 H 0.269 0.731 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.071 0.929 44 H 0.046 0.954 45 H 0.052 0.948 46 H 0.022 0.978 47 H 0.059 0.941 48 H 0.056 0.944 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.791 -20.721 -17.215 27.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.024 4.024 3 O -0.319 6.319 4 C -0.016 4.016 5 C 0.065 3.935 6 H 0.104 0.896 7 N -0.381 5.381 8 C 0.420 3.580 9 O -0.507 6.507 10 N -0.369 5.369 11 C -0.010 4.010 12 C -0.162 4.162 13 C 0.175 3.825 14 O -0.381 6.381 15 C -0.589 4.589 16 H 0.057 0.943 17 C -0.161 4.161 18 N -0.572 5.572 19 Si 0.759 3.241 20 H -0.192 1.192 21 H -0.236 1.236 22 H -0.138 1.138 23 C -0.001 4.001 24 C -0.116 4.116 25 C -0.186 4.186 26 C -0.195 4.195 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.105 0.895 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.106 0.894 33 H 0.080 0.920 34 H 0.242 0.758 35 H 0.092 0.908 36 H 0.106 0.894 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.222 0.778 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.089 0.911 44 H 0.065 0.935 45 H 0.071 0.929 46 H 0.041 0.959 47 H 0.078 0.922 48 H 0.075 0.925 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.638 -20.710 -17.446 27.659 hybrid contribution -0.096 0.817 0.857 1.188 sum -5.734 -19.893 -16.588 26.529 Atomic orbital electron populations 1.21754 0.93492 1.03064 1.02502 1.22616 0.95841 0.82919 1.00992 1.87903 1.20658 1.27795 1.95587 1.22796 0.82111 0.94280 1.02459 1.21091 0.99118 0.90848 0.82446 0.89571 1.45024 1.37632 1.29215 1.26211 1.15551 0.82103 0.80790 0.79568 1.90857 1.33277 1.66688 1.59884 1.47609 1.35683 1.30998 1.22577 1.22010 0.89642 0.98103 0.91231 1.22826 1.01205 0.94519 0.97674 1.20025 0.86030 0.88909 0.87533 1.86423 1.42036 1.38777 1.70860 1.21333 0.96468 1.35284 1.05838 0.94266 1.25737 1.03691 0.93053 0.93633 1.70061 1.38030 1.40805 1.08311 0.86174 0.79794 0.77163 0.80961 1.19221 1.23579 1.13799 1.22535 0.96555 0.86005 0.94981 1.21384 1.00504 0.94432 0.95237 1.21738 1.00853 0.96456 0.99595 1.21796 1.01489 1.00832 0.95393 0.92697 0.92433 0.89515 0.92119 0.92737 0.89391 0.91993 0.75828 0.90801 0.89422 0.90800 0.89712 0.77756 0.92231 0.92572 0.92621 0.91053 0.93477 0.92936 0.95924 0.92172 0.92468 0.91044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 10.28 71.98 0.74 -0.90 16 2 C 0.05 0.60 6.66 71.98 0.48 1.08 16 3 O -0.40 -6.57 9.24 -148.98 -1.38 -7.95 16 4 C 0.06 0.91 5.10 71.98 0.37 1.28 16 5 C 0.17 3.73 2.24 44.99 0.10 3.83 16 6 H 0.09 2.14 7.58 -2.38 -0.02 2.12 16 7 N -0.73 -19.16 4.95 -457.82 -2.27 -21.42 16 8 C 0.72 25.27 7.01 179.06 1.26 26.53 16 9 O -0.63 -25.96 13.58 -4.00 -0.05 -26.01 16 10 N -0.63 -22.92 3.32 -829.35 -2.76 -25.68 16 11 C 0.11 3.51 6.15 86.73 0.53 4.04 16 12 C -0.12 -4.79 4.71 31.78 0.15 -4.64 16 13 C 0.22 9.56 0.71 -10.07 -0.01 9.56 16 14 O -0.57 -24.70 10.58 -148.98 -1.58 -26.28 16 15 C -0.55 -29.84 8.85 25.60 0.23 -29.61 16 16 H 0.04 2.37 8.04 -2.92 -0.02 2.35 16 17 C 0.04 2.20 5.42 84.66 0.46 2.66 16 18 N -0.93 -56.19 13.96 21.45 0.30 -55.89 16 19 Si 0.93 42.83 24.01 68.60 1.65 44.48 16 20 H -0.27 -11.42 7.07 99.48 0.70 -10.72 16 21 H -0.31 -14.47 7.11 99.48 0.71 -13.77 16 22 H -0.22 -9.50 5.48 99.48 0.54 -8.96 16 23 C 0.12 5.19 6.10 86.93 0.53 5.72 16 24 C -0.10 -2.11 2.46 -10.79 -0.03 -2.14 16 25 C -0.13 -3.66 7.64 71.98 0.55 -3.11 16 26 C -0.14 -2.21 8.78 71.98 0.63 -1.58 16 27 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.09 0.96 6.68 -2.38 -0.02 0.95 16 33 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 34 H 0.41 9.44 7.37 -92.71 -0.68 8.75 16 35 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.07 2.82 5.08 -2.39 -0.01 2.81 16 38 H 0.08 3.31 8.04 -2.39 -0.02 3.29 16 39 H 0.37 14.61 9.06 -74.06 -0.67 13.94 16 40 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 41 H 0.06 2.48 8.04 -2.38 -0.02 2.46 16 42 H 0.06 2.44 8.03 -2.39 -0.02 2.42 16 43 H 0.07 1.68 7.63 -2.39 -0.02 1.66 16 44 H 0.05 1.49 7.22 -2.39 -0.02 1.47 16 45 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.02 0.76 6.36 -2.39 -0.02 0.75 16 47 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 49 H 0.07 0.91 6.50 -2.38 -0.02 0.90 16 Total: -1.00 -69.31 374.91 -0.67 -69.98 By element: Atomic # 1 Polarization: 36.63 SS G_CDS: -0.58 Total: 36.06 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: 5.99 Total: 12.71 kcal Atomic # 7 Polarization: -98.27 SS G_CDS: -4.72 Total: -102.99 kcal Atomic # 8 Polarization: -57.23 SS G_CDS: -3.01 Total: -60.23 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 1.65 Total: 44.48 kcal Total: -69.31 -0.67 -69.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592017767.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.996 kcal (2) G-P(sol) polarization free energy of solvation -69.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds