Wall clock time and date at job start Tue Mar 31 2020 10:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42901 * 109.47084 * 2 1 4 4 C 1.42895 * 113.99948 * 179.97438 * 3 2 1 5 5 C 1.53006 * 109.47036 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47164 * 300.00260 * 5 4 3 7 7 C 1.52999 * 109.46623 * 60.00161 * 5 4 3 8 8 C 1.52997 * 109.47127 * 180.02562 * 5 4 3 9 9 N 1.46496 * 109.46953 * 179.97438 * 8 5 4 10 10 C 1.34779 * 120.00107 * 180.02562 * 9 8 5 11 11 O 1.21588 * 119.99436 * 359.97438 * 10 9 8 12 12 N 1.34774 * 120.00239 * 180.02562 * 10 9 8 13 13 C 1.47018 * 125.64982 * 359.69668 * 12 10 9 14 14 C 1.54330 * 107.27040 * 178.84705 * 13 12 10 15 15 C 1.55159 * 103.01733 * 338.13958 * 14 13 12 16 16 O 1.42905 * 111.00358 * 277.22992 * 15 14 13 17 17 C 1.50705 * 111.03793 * 153.39381 * 15 14 13 18 18 H 1.08001 * 120.00023 * 6.33090 * 17 15 14 19 19 C 1.37874 * 119.99861 * 186.32931 * 17 15 14 20 20 N 1.31506 * 120.00306 * 0.02562 * 19 17 15 21 21 Si 1.86801 * 119.99700 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47426 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47209 * 120.00159 * 21 19 17 24 24 H 1.48506 * 109.46946 * 240.00100 * 21 19 17 25 25 C 1.47429 * 125.64795 * 179.97438 * 12 10 9 26 26 H 1.09000 * 109.46805 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47760 * 299.99812 * 1 2 3 28 28 H 1.08999 * 109.47329 * 60.00419 * 1 2 3 29 29 H 1.08995 * 109.46983 * 239.99778 * 2 1 3 30 30 H 1.09003 * 109.47124 * 120.00051 * 2 1 3 31 31 H 1.09001 * 109.46798 * 60.00190 * 4 3 2 32 32 H 1.08993 * 109.47318 * 299.99656 * 4 3 2 33 33 H 1.09000 * 109.47140 * 60.00051 * 6 5 4 34 34 H 1.09001 * 109.47230 * 179.97438 * 6 5 4 35 35 H 1.09001 * 109.47375 * 300.00034 * 6 5 4 36 36 H 1.09001 * 109.47362 * 60.00551 * 7 5 4 37 37 H 1.09002 * 109.46716 * 179.97438 * 7 5 4 38 38 H 1.09000 * 109.47486 * 299.99829 * 7 5 4 39 39 H 1.08996 * 109.46952 * 300.00302 * 8 5 4 40 40 H 1.09001 * 109.46832 * 60.00321 * 8 5 4 41 41 H 0.96999 * 120.00356 * 0.02562 * 9 8 5 42 42 H 1.09004 * 109.87718 * 298.39481 * 13 12 10 43 43 H 1.09006 * 109.88211 * 59.55394 * 13 12 10 44 44 H 1.08995 * 110.85586 * 219.67198 * 14 13 12 45 45 H 1.09002 * 110.51386 * 96.44614 * 14 13 12 46 46 H 0.96701 * 113.99749 * 173.64840 * 16 15 14 47 47 H 0.97006 * 120.00456 * 179.97438 * 20 19 17 48 48 H 1.08997 * 110.36766 * 322.93543 * 25 12 10 49 49 H 1.08999 * 110.36232 * 85.14882 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8253 2.9384 -0.0001 6 6 3.2605 3.6164 -1.2500 7 6 3.2594 3.6178 1.2485 8 6 5.3505 3.0593 -0.0001 9 7 5.7282 4.4747 -0.0014 10 6 7.0297 4.8249 -0.0022 11 8 7.8903 3.9660 -0.0013 12 7 7.3772 6.1271 -0.0029 13 6 6.4439 7.2630 -0.0092 14 6 7.2913 8.5525 0.0222 15 6 8.6441 8.0675 0.6072 16 8 8.5933 8.0085 2.0341 17 6 9.7788 8.9454 0.1457 18 1 9.5725 9.8404 -0.4224 19 6 11.0802 8.6060 0.4490 20 7 11.3315 7.5159 1.1404 21 14 12.4867 9.6945 -0.1223 22 1 11.9420 10.8517 -0.8771 23 1 13.2441 10.1845 1.0572 24 1 13.3921 8.9124 -1.0020 25 6 8.7562 6.6484 -0.0032 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.8339 0.9764 -0.8892 32 1 3.8332 0.9768 0.8908 33 1 2.1739 3.5304 -1.2504 34 1 3.5412 4.6697 -1.2502 35 1 3.6636 3.1324 -2.1395 36 1 3.6618 3.1348 2.1390 37 1 3.5408 4.6708 1.2483 38 1 2.1728 3.5317 1.2481 39 1 5.7532 2.5761 0.8900 40 1 5.7533 2.5753 -0.8899 41 1 5.0416 5.1599 -0.0017 42 1 5.8361 7.2383 -0.9137 43 1 5.8031 7.2212 0.8717 44 1 6.8362 9.3002 0.6716 45 1 7.4257 8.9458 -0.9855 46 1 9.3803 7.6197 2.4398 47 1 12.2471 7.2769 1.3535 48 1 9.3994 6.0201 0.6130 49 1 9.1415 6.7012 -1.0215 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592024770.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:25:46 Heat of formation + Delta-G solvation = -158.632402 kcal Electronic energy + Delta-G solvation = -27382.414171 eV Core-core repulsion = 23536.336854 eV Total energy + Delta-G solvation = -3846.077316 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.35532 -39.88658 -39.00361 -37.48252 -36.02329 -34.26085 -34.22078 -31.96320 -31.55206 -29.55724 -28.17484 -28.00442 -27.19608 -25.94324 -24.03149 -23.57596 -21.47325 -21.01882 -20.20467 -19.19877 -18.77854 -17.71003 -17.16973 -17.08941 -16.88773 -16.78229 -16.29471 -15.70469 -15.63740 -15.52130 -14.94741 -14.73096 -14.60372 -14.35373 -14.15111 -14.00627 -13.66941 -13.51407 -13.29992 -13.19400 -13.07805 -12.85829 -12.72325 -12.50964 -12.32642 -12.26701 -12.24626 -12.19103 -12.07507 -11.81193 -11.78402 -11.51387 -11.32871 -11.17775 -10.66335 -10.50097 -10.31417 -10.17838 -9.30988 -8.23337 -6.40541 1.41274 1.44715 1.55590 1.65991 2.16834 2.39005 2.69172 3.02802 3.17869 3.69867 3.74730 3.81156 3.89250 4.10115 4.20192 4.20534 4.28352 4.35099 4.37439 4.44540 4.53743 4.57070 4.62226 4.67962 4.76315 4.78531 4.86164 4.87423 5.01932 5.03098 5.08049 5.08621 5.11388 5.12233 5.30265 5.31746 5.39118 5.39483 5.40468 5.48003 5.50356 5.77445 6.06450 6.19270 6.28588 6.67281 7.07328 7.28846 7.36226 7.58345 8.81962 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.037461 B = 0.002455 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.255074 B =11403.913187 C =11663.678182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.049 3.951 3 O -0.395 6.395 4 C 0.077 3.923 5 C -0.064 4.064 6 C -0.134 4.134 7 C -0.135 4.135 8 C 0.151 3.849 9 N -0.724 5.724 10 C 0.710 3.290 11 O -0.645 6.645 12 N -0.634 5.634 13 C 0.107 3.893 14 C -0.110 4.110 15 C 0.231 3.769 16 O -0.587 6.587 17 C -0.554 4.554 18 H 0.070 0.930 19 C 0.024 3.976 20 N -0.916 5.916 21 Si 0.964 3.036 22 H -0.263 1.263 23 H -0.281 1.281 24 H -0.284 1.284 25 C 0.129 3.871 26 H 0.086 0.914 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.051 0.949 37 H 0.055 0.945 38 H 0.071 0.929 39 H 0.054 0.946 40 H 0.059 0.941 41 H 0.407 0.593 42 H 0.090 0.910 43 H 0.072 0.928 44 H 0.086 0.914 45 H 0.089 0.911 46 H 0.372 0.628 47 H 0.268 0.732 48 H 0.043 0.957 49 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.180 -10.308 -3.429 23.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.027 4.027 3 O -0.315 6.315 4 C 0.000 4.000 5 C -0.064 4.064 6 C -0.191 4.191 7 C -0.192 4.192 8 C 0.027 3.973 9 N -0.382 5.382 10 C 0.412 3.588 11 O -0.528 6.528 12 N -0.370 5.370 13 C -0.016 4.016 14 C -0.148 4.148 15 C 0.191 3.809 16 O -0.395 6.395 17 C -0.592 4.592 18 H 0.088 0.912 19 C -0.177 4.177 20 N -0.555 5.555 21 Si 0.790 3.210 22 H -0.186 1.186 23 H -0.207 1.207 24 H -0.210 1.210 25 C 0.006 3.994 26 H 0.105 0.895 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.245 0.755 42 H 0.108 0.892 43 H 0.090 0.910 44 H 0.104 0.896 45 H 0.107 0.893 46 H 0.221 0.779 47 H 0.078 0.922 48 H 0.061 0.939 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -21.191 -10.676 -3.463 23.980 hybrid contribution 1.867 0.042 0.019 1.868 sum -19.324 -10.634 -3.444 22.324 Atomic orbital electron populations 1.21742 0.92914 1.03186 1.02691 1.22632 0.96264 0.83115 1.00679 1.87828 1.20672 1.27486 1.95532 1.22330 0.81649 0.95026 1.01013 1.20676 0.92009 0.95552 0.98192 1.21767 1.01736 1.00070 0.95518 1.21773 1.01758 1.00007 0.95661 1.21109 0.94151 0.80535 1.01515 1.44874 1.04275 1.09050 1.79983 1.15722 0.83540 0.81519 0.78030 1.90845 1.50932 1.49939 1.61089 1.47860 1.09361 1.03633 1.76184 1.22122 0.92134 0.85245 1.02050 1.22593 0.94216 0.96342 1.01640 1.19880 0.93244 0.89287 0.78502 1.86093 1.45663 1.85719 1.21987 1.21828 0.91505 1.09905 1.35971 0.91214 1.25849 1.01580 0.96037 0.94214 1.69856 1.21362 1.24968 1.39297 0.85406 0.78680 0.78925 0.77998 1.18649 1.20658 1.20951 1.22635 0.80610 0.97270 0.98914 0.89505 0.92311 0.92232 0.92797 0.92922 0.92412 0.92652 0.91084 0.92381 0.92663 0.92988 0.92550 0.91003 0.92719 0.92245 0.75514 0.89224 0.90957 0.89579 0.89253 0.77930 0.92239 0.93887 0.94334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 10.28 71.98 0.74 -0.79 16 2 C 0.05 0.63 6.66 71.98 0.48 1.11 16 3 O -0.40 -6.82 8.99 -148.98 -1.34 -8.16 16 4 C 0.08 1.29 4.81 71.98 0.35 1.64 16 5 C -0.06 -1.18 0.61 -52.18 -0.03 -1.21 16 6 C -0.13 -2.27 8.15 71.98 0.59 -1.68 16 7 C -0.13 -2.43 8.16 71.98 0.59 -1.84 16 8 C 0.15 3.80 4.56 86.38 0.39 4.20 16 9 N -0.72 -21.10 4.92 -478.55 -2.35 -23.46 16 10 C 0.71 29.22 8.49 179.05 1.52 30.74 16 11 O -0.65 -32.62 16.60 -3.99 -0.07 -32.68 16 12 N -0.63 -26.28 3.33 -829.78 -2.76 -29.04 16 13 C 0.11 3.44 6.15 86.73 0.53 3.97 16 14 C -0.11 -4.12 6.13 31.79 0.19 -3.92 16 15 C 0.23 11.22 0.87 -10.15 -0.01 11.21 16 16 O -0.59 -30.33 13.16 -148.98 -1.96 -32.29 16 17 C -0.55 -28.87 8.27 25.60 0.21 -28.66 16 18 H 0.07 3.51 7.79 -2.91 -0.02 3.49 16 19 C 0.02 1.27 5.29 84.66 0.45 1.72 16 20 N -0.92 -50.65 10.69 21.44 0.23 -50.42 16 21 Si 0.96 42.08 29.54 68.60 2.03 44.11 16 22 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 23 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 24 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 25 C 0.13 6.48 5.38 86.85 0.47 6.95 16 26 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.06 0.65 8.14 -2.39 -0.02 0.64 16 29 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.07 1.17 7.68 -2.39 -0.02 1.15 16 34 H 0.06 0.95 6.86 -2.39 -0.02 0.93 16 35 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.06 1.00 6.86 -2.39 -0.02 0.99 16 38 H 0.07 1.24 7.68 -2.39 -0.02 1.22 16 39 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.41 9.62 5.15 -92.71 -0.48 9.14 16 42 H 0.09 2.23 8.14 -2.39 -0.02 2.22 16 43 H 0.07 2.10 8.14 -2.38 -0.02 2.09 16 44 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 45 H 0.09 3.10 8.03 -2.39 -0.02 3.08 16 46 H 0.37 20.29 7.56 -74.06 -0.56 19.73 16 47 H 0.27 14.23 8.31 -92.70 -0.77 13.46 16 48 H 0.04 2.49 7.33 -2.39 -0.02 2.47 16 49 H 0.04 2.02 8.03 -2.39 -0.02 2.00 16 Total: -1.00 -67.30 387.64 0.14 -67.17 By element: Atomic # 1 Polarization: 41.46 SS G_CDS: -0.11 Total: 41.35 kcal Atomic # 6 Polarization: 16.95 SS G_CDS: 6.47 Total: 23.42 kcal Atomic # 7 Polarization: -98.03 SS G_CDS: -4.88 Total: -102.92 kcal Atomic # 8 Polarization: -69.76 SS G_CDS: -3.37 Total: -73.13 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -67.30 0.14 -67.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592024770.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.467 kcal (2) G-P(sol) polarization free energy of solvation -67.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds