Wall clock time and date at job start Tue Mar 31 2020 10:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 120.00009 * 2 1 4 4 H 1.48501 * 109.47243 * 180.27815 * 3 2 1 5 5 H 1.48502 * 109.47455 * 300.28374 * 3 2 1 6 6 H 1.48505 * 109.47087 * 60.28072 * 3 2 1 7 7 C 1.37874 * 119.99769 * 180.28273 * 2 1 3 8 8 H 1.08004 * 119.99949 * 179.72409 * 7 2 1 9 9 C 1.50696 * 119.99977 * 359.71801 * 7 2 1 10 10 C 1.53005 * 109.47109 * 175.11917 * 9 7 2 11 11 H 1.09002 * 109.46659 * 54.60715 * 10 9 7 12 12 N 1.46903 * 109.47027 * 294.61332 * 10 9 7 13 13 C 1.46897 * 110.99734 * 154.25878 * 12 10 9 14 14 H 1.08997 * 109.73742 * 32.88174 * 13 12 10 15 15 C 1.53332 * 109.73731 * 272.18003 * 13 12 10 16 16 C 1.51424 * 108.65451 * 176.59086 * 15 13 12 17 17 C 1.53013 * 111.68317 * 61.71425 * 16 15 13 18 18 H 1.08996 * 112.05784 * 73.97185 * 17 16 15 19 19 C 1.55333 * 106.98254 * 197.52222 * 17 16 15 20 20 N 1.47593 * 106.92318 * 91.75811 * 19 17 16 21 21 C 1.48235 * 108.56784 * 1.01425 * 20 19 17 22 22 C 1.53905 * 104.02469 * 23.32959 * 21 20 19 23 23 H 1.09003 * 108.65003 * 77.03297 * 22 21 20 24 24 C 1.50755 * 112.99984 * 198.46758 * 22 21 20 25 25 C 1.50700 * 109.47245 * 174.60699 * 10 9 7 26 26 C 1.38237 * 119.99623 * 79.73134 * 25 10 9 27 27 C 1.38234 * 119.99873 * 179.76363 * 26 25 10 28 28 C 1.38243 * 119.99860 * 0.50938 * 27 26 25 29 29 C 1.38242 * 119.99828 * 359.74023 * 28 27 26 30 30 C 1.38232 * 120.00019 * 0.02562 * 29 28 27 31 31 H 0.97002 * 119.99893 * 359.72054 * 1 2 3 32 32 H 1.09000 * 109.47340 * 295.11819 * 9 7 2 33 33 H 1.08997 * 109.47188 * 55.12265 * 9 7 2 34 34 H 1.00891 * 111.00201 * 30.30173 * 12 10 9 35 35 H 1.09001 * 109.67435 * 295.98801 * 15 13 12 36 36 H 1.09002 * 109.67027 * 56.52045 * 15 13 12 37 37 H 1.08992 * 108.23388 * 301.51712 * 16 15 13 38 38 H 1.09000 * 109.39392 * 182.67791 * 16 15 13 39 39 H 1.09004 * 109.96935 * 211.12290 * 19 17 16 40 40 H 1.08999 * 109.96987 * 332.35323 * 19 17 16 41 41 H 1.00904 * 111.00038 * 238.74384 * 20 19 17 42 42 H 1.08993 * 110.51687 * 264.69311 * 21 20 19 43 43 H 1.09000 * 110.51773 * 141.96395 * 21 20 19 44 44 H 1.09001 * 109.02858 * 304.51963 * 24 22 21 45 45 H 1.08994 * 109.02872 * 185.68034 * 24 22 21 46 46 H 1.08003 * 119.99963 * 359.97438 * 26 25 10 47 47 H 1.07997 * 120.00343 * 180.22765 * 27 26 25 48 48 H 1.08000 * 119.99956 * 179.72216 * 28 27 26 49 49 H 1.07995 * 119.99876 * 179.97438 * 29 28 27 50 50 H 1.08004 * 119.99977 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0068 5 1 1.8853 2.3995 -1.2090 6 1 1.8956 2.3934 1.2160 7 6 2.0045 -1.1940 -0.0059 8 1 3.0846 -1.1941 -0.0104 9 6 1.2510 -2.4991 -0.0059 10 6 2.2402 -3.6591 -0.1357 11 1 2.9920 -3.5851 0.6500 12 7 2.8964 -3.5985 -1.4486 13 6 4.2138 -4.2471 -1.4091 14 1 4.1935 -5.0792 -0.7053 15 6 5.2787 -3.2308 -0.9801 16 6 6.6100 -3.9432 -0.8657 17 6 7.0532 -4.5319 -2.2068 18 1 7.4012 -3.7629 -2.8964 19 6 8.1493 -5.5885 -1.8983 20 7 7.4639 -6.8866 -1.7455 21 6 6.0125 -6.6832 -1.9683 22 6 5.9417 -5.4034 -2.8202 23 1 6.2077 -5.6533 -3.8474 24 6 4.5793 -4.7584 -2.8022 25 6 1.5018 -4.9662 -0.0029 26 6 0.8045 -5.4786 -1.0809 27 6 0.1313 -6.6799 -0.9607 28 6 0.1466 -7.3636 0.2408 29 6 0.8397 -6.8485 1.3203 30 6 1.5170 -5.6496 1.1985 31 1 -0.4850 0.8401 0.0041 32 1 0.6955 -2.5979 0.9267 33 1 0.5568 -2.5178 -0.8461 34 1 2.9720 -2.6456 -1.7714 35 1 5.3557 -2.4420 -1.7285 36 1 5.0066 -2.7985 -0.0172 37 1 6.5045 -4.7485 -0.1388 38 1 7.3670 -3.2417 -0.5152 39 1 8.8610 -5.6380 -2.7225 40 1 8.6670 -5.3291 -0.9748 41 1 7.6378 -7.2822 -0.8337 42 1 5.4968 -6.5391 -1.0189 43 1 5.5873 -7.5274 -2.5109 44 1 3.8356 -5.4897 -3.1188 45 1 4.5729 -3.9218 -3.5009 46 1 0.7885 -4.9421 -2.0181 47 1 -0.4105 -7.0822 -1.8039 48 1 -0.3831 -8.2999 0.3361 49 1 0.8514 -7.3824 2.2590 50 1 2.0581 -5.2470 2.0421 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592470777.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:00 Heat of formation + Delta-G solvation = 5.257110 kcal Electronic energy + Delta-G solvation = -27264.648807 eV Core-core repulsion = 23868.820288 eV Total energy + Delta-G solvation = -3395.828520 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.26266 -38.87735 -36.57384 -34.24888 -32.53879 -31.69280 -30.67880 -30.36685 -29.01955 -28.08574 -26.33033 -24.39676 -22.75867 -22.13577 -21.86602 -21.67491 -20.74946 -19.62740 -18.53309 -16.63414 -16.23636 -16.12973 -16.04713 -15.08087 -14.69959 -14.66701 -14.44327 -14.19047 -13.93049 -13.33959 -13.25039 -13.10460 -12.83868 -12.75439 -12.46044 -12.23338 -12.09544 -12.05984 -11.97009 -11.60989 -11.24710 -11.15803 -11.02912 -10.93927 -10.78357 -10.67131 -10.55061 -10.42493 -10.36499 -9.98290 -9.85295 -9.56890 -9.19240 -8.52647 -8.47494 -8.41089 -8.06789 -7.68951 -6.08039 -4.12063 1.86721 1.92277 3.24611 3.33242 3.34995 4.13059 4.29178 4.38772 4.45452 4.56930 4.77548 4.88504 5.13320 5.15023 5.28780 5.30743 5.33988 5.38248 5.41464 5.44638 5.50150 5.55338 5.62645 5.68805 5.73144 5.77171 5.89547 5.94292 6.01438 6.04237 6.07795 6.14924 6.21229 6.26488 6.27321 6.37683 6.44949 6.51645 6.57181 6.62965 6.72994 6.74434 6.92018 6.98958 7.21654 7.23093 7.46139 7.53903 7.58753 7.90402 8.00419 8.22445 8.29507 8.94308 9.52600 11.02487 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.008992 B = 0.005363 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3113.193221 B = 5219.233329 C = 7676.505230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.888 3.112 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.285 1.285 7 C -0.524 4.524 8 H 0.054 0.946 9 C 0.027 3.973 10 C 0.129 3.871 11 H 0.039 0.961 12 N -0.675 5.675 13 C 0.094 3.906 14 H 0.068 0.932 15 C -0.149 4.149 16 C -0.107 4.107 17 C -0.103 4.103 18 H 0.085 0.915 19 C 0.047 3.953 20 N -0.686 5.686 21 C 0.049 3.951 22 C -0.086 4.086 23 H 0.072 0.928 24 C -0.095 4.095 25 C -0.052 4.052 26 C -0.087 4.087 27 C -0.130 4.130 28 C -0.138 4.138 29 C -0.128 4.128 30 C -0.126 4.126 31 H 0.261 0.739 32 H 0.018 0.982 33 H 0.032 0.968 34 H 0.359 0.641 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.052 0.948 38 H 0.057 0.943 39 H 0.070 0.930 40 H 0.051 0.949 41 H 0.335 0.665 42 H 0.048 0.952 43 H 0.076 0.924 44 H 0.068 0.932 45 H 0.063 0.937 46 H 0.128 0.872 47 H 0.113 0.887 48 H 0.110 0.890 49 H 0.111 0.889 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.365 -12.862 -2.717 16.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.139 4.139 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.211 1.211 7 C -0.562 4.562 8 H 0.072 0.928 9 C -0.010 4.010 10 C 0.019 3.981 11 H 0.057 0.943 12 N -0.307 5.307 13 C -0.017 4.017 14 H 0.086 0.914 15 C -0.188 4.188 16 C -0.145 4.145 17 C -0.123 4.123 18 H 0.104 0.896 19 C -0.082 4.082 20 N -0.315 5.315 21 C -0.079 4.079 22 C -0.106 4.106 23 H 0.091 0.909 24 C -0.134 4.134 25 C -0.053 4.053 26 C -0.105 4.105 27 C -0.148 4.148 28 C -0.156 4.156 29 C -0.146 4.146 30 C -0.144 4.144 31 H 0.071 0.929 32 H 0.037 0.963 33 H 0.050 0.950 34 H 0.181 0.819 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.070 0.930 41 H 0.150 0.850 42 H 0.066 0.934 43 H 0.094 0.906 44 H 0.086 0.914 45 H 0.082 0.918 46 H 0.146 0.854 47 H 0.131 0.869 48 H 0.128 0.872 49 H 0.130 0.870 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 10.023 -13.523 -3.628 17.219 hybrid contribution 0.674 2.099 1.498 2.665 sum 10.698 -11.424 -2.130 15.795 Atomic orbital electron populations 1.69977 1.06027 1.26585 1.50046 1.24970 0.94750 0.99094 0.95095 0.86600 0.80042 0.84062 0.77657 1.19840 1.20945 1.21072 1.21159 0.92727 0.90857 1.51465 0.92782 1.19265 0.93833 0.89903 0.97982 1.20610 0.95725 0.92422 0.89301 0.94310 1.60471 1.18444 1.24776 1.26978 1.21515 0.88089 0.95954 0.96099 0.91359 1.22066 0.95270 0.99084 1.02407 1.21264 0.97539 0.99495 0.96189 1.22393 0.95378 0.97209 0.97292 0.89622 1.22922 0.96410 0.88077 1.00773 1.62014 1.09254 1.24493 1.35723 1.22793 0.88275 0.97616 0.99259 1.21387 0.95242 0.94356 0.99595 0.90914 1.20862 0.94500 1.00360 0.97662 1.20223 0.96495 0.95708 0.92849 1.21046 0.95388 0.94768 0.99274 1.21128 1.00261 0.96096 0.97329 1.20968 1.00854 1.00009 0.93781 1.20959 0.98853 0.96512 0.98275 1.21031 1.00643 0.95231 0.97502 0.92944 0.96345 0.94991 0.81906 0.91688 0.91462 0.92904 0.92396 0.91175 0.93025 0.84993 0.93380 0.90562 0.91356 0.91810 0.85392 0.86924 0.87154 0.87044 0.86886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.74 13.29 55.43 0.74 -25.00 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -13.67 8.05 -34.44 -0.28 -13.95 16 8 H 0.05 1.37 7.66 -52.48 -0.40 0.96 16 9 C 0.03 0.67 4.54 -27.88 -0.13 0.54 16 10 C 0.13 2.53 2.01 -68.86 -0.14 2.39 16 11 H 0.04 0.79 7.21 -51.93 -0.37 0.41 16 12 N -0.67 -11.85 5.34 -100.86 -0.54 -12.39 16 13 C 0.09 1.38 2.10 -67.63 -0.14 1.24 16 14 H 0.07 1.06 6.32 -51.93 -0.33 0.74 16 15 C -0.15 -2.14 5.15 -27.36 -0.14 -2.28 16 16 C -0.11 -1.27 4.59 -27.52 -0.13 -1.39 16 17 C -0.10 -1.12 3.58 -88.86 -0.32 -1.44 16 18 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 19 C 0.05 0.47 6.91 -2.21 -0.02 0.46 16 20 N -0.69 -7.24 7.41 -110.36 -0.82 -8.06 16 21 C 0.05 0.55 6.54 -2.62 -0.02 0.54 16 22 C -0.09 -0.98 2.81 -90.76 -0.25 -1.24 16 23 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 24 C -0.10 -1.23 4.99 -27.94 -0.14 -1.37 16 25 C -0.05 -0.94 4.67 -104.62 -0.49 -1.43 16 26 C -0.09 -1.50 9.32 -39.58 -0.37 -1.86 16 27 C -0.13 -1.97 10.05 -39.58 -0.40 -2.37 16 28 C -0.14 -1.97 10.05 -39.58 -0.40 -2.37 16 29 C -0.13 -1.89 10.05 -39.58 -0.40 -2.29 16 30 C -0.13 -2.10 9.67 -39.58 -0.38 -2.48 16 31 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 32 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.36 6.95 7.05 -39.30 -0.28 6.68 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.07 1.10 7.67 -51.93 -0.40 0.70 16 37 H 0.05 0.64 7.20 -51.93 -0.37 0.27 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.05 0.48 7.76 -51.93 -0.40 0.07 16 41 H 0.34 3.12 8.91 -39.29 -0.35 2.77 16 42 H 0.05 0.58 6.16 -51.93 -0.32 0.26 16 43 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.13 2.26 7.73 -52.48 -0.41 1.86 16 47 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 48 H 0.11 1.29 8.06 -52.49 -0.42 0.86 16 49 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 50 H 0.11 1.79 8.04 -52.48 -0.42 1.37 16 LS Contribution 383.02 15.07 5.77 5.77 Total: -1.00 -27.66 383.02 -12.78 -40.44 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: -8.69 Total: 11.10 kcal Atomic # 6 Polarization: -23.44 SS G_CDS: -4.23 Total: -27.67 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: -0.62 Total: -45.46 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -27.66 -12.78 -40.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592470777.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.701 kcal (2) G-P(sol) polarization free energy of solvation -27.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds