Wall clock time and date at job start Tue Mar 31 2020 10:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 120.00009 * 2 1 4 4 H 1.48501 * 109.47243 * 180.27815 * 3 2 1 5 5 H 1.48502 * 109.47455 * 300.28374 * 3 2 1 6 6 H 1.48505 * 109.47087 * 60.28072 * 3 2 1 7 7 C 1.37874 * 119.99769 * 180.28273 * 2 1 3 8 8 H 1.08004 * 119.99949 * 179.72409 * 7 2 1 9 9 C 1.50696 * 119.99977 * 359.71801 * 7 2 1 10 10 C 1.53005 * 109.47109 * 175.11917 * 9 7 2 11 11 H 1.09002 * 109.46659 * 54.60715 * 10 9 7 12 12 N 1.46903 * 109.47027 * 294.61332 * 10 9 7 13 13 C 1.46897 * 110.99734 * 154.25878 * 12 10 9 14 14 H 1.08997 * 109.73742 * 32.88174 * 13 12 10 15 15 C 1.53332 * 109.73731 * 272.18003 * 13 12 10 16 16 C 1.51424 * 108.65451 * 176.59086 * 15 13 12 17 17 C 1.53013 * 111.68317 * 61.71425 * 16 15 13 18 18 H 1.08996 * 112.05784 * 73.97185 * 17 16 15 19 19 C 1.55333 * 106.98254 * 197.52222 * 17 16 15 20 20 N 1.47593 * 106.92318 * 91.75811 * 19 17 16 21 21 C 1.48235 * 108.56784 * 1.01425 * 20 19 17 22 22 C 1.53905 * 104.02469 * 23.32959 * 21 20 19 23 23 H 1.09003 * 108.65003 * 77.03297 * 22 21 20 24 24 C 1.50755 * 112.99984 * 198.46758 * 22 21 20 25 25 C 1.50700 * 109.47245 * 174.60699 * 10 9 7 26 26 C 1.38237 * 119.99623 * 79.73134 * 25 10 9 27 27 C 1.38234 * 119.99873 * 179.76363 * 26 25 10 28 28 C 1.38243 * 119.99860 * 0.50938 * 27 26 25 29 29 C 1.38242 * 119.99828 * 359.74023 * 28 27 26 30 30 C 1.38232 * 120.00019 * 0.02562 * 29 28 27 31 31 H 0.97002 * 119.99893 * 359.72054 * 1 2 3 32 32 H 1.09000 * 109.47340 * 295.11819 * 9 7 2 33 33 H 1.08997 * 109.47188 * 55.12265 * 9 7 2 34 34 H 1.00891 * 111.00201 * 30.30173 * 12 10 9 35 35 H 1.09001 * 109.67435 * 295.98801 * 15 13 12 36 36 H 1.09002 * 109.67027 * 56.52045 * 15 13 12 37 37 H 1.08992 * 108.23388 * 301.51712 * 16 15 13 38 38 H 1.09000 * 109.39392 * 182.67791 * 16 15 13 39 39 H 1.09004 * 109.96935 * 211.12290 * 19 17 16 40 40 H 1.08999 * 109.96987 * 332.35323 * 19 17 16 41 41 H 1.00904 * 111.00038 * 238.74384 * 20 19 17 42 42 H 1.08993 * 110.51687 * 264.69311 * 21 20 19 43 43 H 1.09000 * 110.51773 * 141.96395 * 21 20 19 44 44 H 1.09001 * 109.02858 * 304.51963 * 24 22 21 45 45 H 1.08994 * 109.02872 * 185.68034 * 24 22 21 46 46 H 1.08003 * 119.99963 * 359.97438 * 26 25 10 47 47 H 1.07997 * 120.00343 * 180.22765 * 27 26 25 48 48 H 1.08000 * 119.99956 * 179.72216 * 28 27 26 49 49 H 1.07995 * 119.99876 * 179.97438 * 29 28 27 50 50 H 1.08004 * 119.99977 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0068 5 1 1.8853 2.3995 -1.2090 6 1 1.8956 2.3934 1.2160 7 6 2.0045 -1.1940 -0.0059 8 1 3.0846 -1.1941 -0.0104 9 6 1.2510 -2.4991 -0.0059 10 6 2.2402 -3.6591 -0.1357 11 1 2.9920 -3.5851 0.6500 12 7 2.8964 -3.5985 -1.4486 13 6 4.2138 -4.2471 -1.4091 14 1 4.1935 -5.0792 -0.7053 15 6 5.2787 -3.2308 -0.9801 16 6 6.6100 -3.9432 -0.8657 17 6 7.0532 -4.5319 -2.2068 18 1 7.4012 -3.7629 -2.8964 19 6 8.1493 -5.5885 -1.8983 20 7 7.4639 -6.8866 -1.7455 21 6 6.0125 -6.6832 -1.9683 22 6 5.9417 -5.4034 -2.8202 23 1 6.2077 -5.6533 -3.8474 24 6 4.5793 -4.7584 -2.8022 25 6 1.5018 -4.9662 -0.0029 26 6 0.8045 -5.4786 -1.0809 27 6 0.1313 -6.6799 -0.9607 28 6 0.1466 -7.3636 0.2408 29 6 0.8397 -6.8485 1.3203 30 6 1.5170 -5.6496 1.1985 31 1 -0.4850 0.8401 0.0041 32 1 0.6955 -2.5979 0.9267 33 1 0.5568 -2.5178 -0.8461 34 1 2.9720 -2.6456 -1.7714 35 1 5.3557 -2.4420 -1.7285 36 1 5.0066 -2.7985 -0.0172 37 1 6.5045 -4.7485 -0.1388 38 1 7.3670 -3.2417 -0.5152 39 1 8.8610 -5.6380 -2.7225 40 1 8.6670 -5.3291 -0.9748 41 1 7.6378 -7.2822 -0.8337 42 1 5.4968 -6.5391 -1.0189 43 1 5.5873 -7.5274 -2.5109 44 1 3.8356 -5.4897 -3.1188 45 1 4.5729 -3.9218 -3.5009 46 1 0.7885 -4.9421 -2.0181 47 1 -0.4105 -7.0822 -1.8039 48 1 -0.3831 -8.2999 0.3361 49 1 0.8514 -7.3824 2.2590 50 1 2.0581 -5.2470 2.0421 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592470777.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:59 Heat of formation + Delta-G solvation = -10.081084 kcal Electronic energy + Delta-G solvation = -27265.313921 eV Core-core repulsion = 23868.820288 eV Total energy + Delta-G solvation = -3396.493634 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.29687 -40.15207 -37.86116 -35.70145 -34.34962 -32.76020 -31.85226 -31.59898 -30.55150 -29.34452 -27.55843 -26.06253 -23.84196 -23.65134 -23.18574 -22.79551 -21.72973 -21.06151 -19.58273 -18.57585 -17.48232 -17.26464 -17.08071 -16.56215 -16.38424 -15.94747 -15.61538 -15.30692 -15.12580 -14.66947 -14.58933 -14.38463 -14.08681 -13.94204 -13.76390 -13.54871 -13.43994 -13.33943 -13.07364 -12.90704 -12.82311 -12.63762 -12.45899 -12.43078 -12.11828 -12.01533 -11.84703 -11.77676 -11.55834 -11.41638 -11.17729 -11.02372 -10.92461 -10.59384 -9.68365 -9.42434 -9.35969 -9.12997 -8.19960 -6.30937 0.59748 0.66097 1.37481 1.39008 1.50145 2.38524 3.01497 3.11929 3.24863 3.41448 3.60743 3.65174 3.88217 4.05118 4.10307 4.14318 4.19908 4.28182 4.32474 4.41381 4.43540 4.46062 4.50918 4.58968 4.66554 4.74382 4.76785 4.81508 4.87365 4.90585 4.92898 4.94492 5.04063 5.07890 5.15416 5.22274 5.24084 5.30993 5.31860 5.42011 5.44611 5.50638 5.54716 5.68437 5.73750 5.81404 5.88509 5.91527 6.17582 6.27320 6.44667 6.46355 6.67433 6.84215 7.38081 8.91535 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.008992 B = 0.005363 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3113.193221 B = 5219.233329 C = 7676.505230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.958 3.042 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.283 1.283 7 C -0.528 4.528 8 H 0.060 0.940 9 C 0.040 3.960 10 C 0.147 3.853 11 H 0.027 0.973 12 N -0.673 5.673 13 C 0.100 3.900 14 H 0.061 0.939 15 C -0.145 4.145 16 C -0.099 4.099 17 C -0.101 4.101 18 H 0.094 0.906 19 C 0.051 3.949 20 N -0.689 5.689 21 C 0.053 3.947 22 C -0.083 4.083 23 H 0.080 0.920 24 C -0.086 4.086 25 C -0.077 4.077 26 C -0.103 4.103 27 C -0.130 4.130 28 C -0.131 4.131 29 C -0.125 4.125 30 C -0.141 4.141 31 H 0.262 0.738 32 H -0.016 1.016 33 H 0.001 0.999 34 H 0.346 0.654 35 H 0.060 0.940 36 H 0.042 0.958 37 H 0.050 0.950 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.062 0.938 41 H 0.343 0.657 42 H 0.037 0.963 43 H 0.077 0.923 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.114 0.886 47 H 0.138 0.862 48 H 0.147 0.853 49 H 0.142 0.858 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.000 -14.382 -2.931 18.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.190 4.190 3 Si 0.783 3.217 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.209 1.209 7 C -0.566 4.566 8 H 0.078 0.922 9 C 0.003 3.997 10 C 0.037 3.963 11 H 0.045 0.955 12 N -0.304 5.304 13 C -0.010 4.010 14 H 0.079 0.921 15 C -0.184 4.184 16 C -0.137 4.137 17 C -0.120 4.120 18 H 0.112 0.888 19 C -0.078 4.078 20 N -0.319 5.319 21 C -0.076 4.076 22 C -0.103 4.103 23 H 0.098 0.902 24 C -0.124 4.124 25 C -0.078 4.078 26 C -0.122 4.122 27 C -0.148 4.148 28 C -0.149 4.149 29 C -0.143 4.143 30 C -0.160 4.160 31 H 0.071 0.929 32 H 0.003 0.997 33 H 0.019 0.981 34 H 0.166 0.834 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.080 0.920 41 H 0.159 0.841 42 H 0.055 0.945 43 H 0.095 0.905 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.132 0.868 47 H 0.156 0.844 48 H 0.165 0.835 49 H 0.160 0.840 50 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 11.682 -15.066 -3.838 19.448 hybrid contribution 0.107 2.490 1.588 2.955 sum 11.789 -12.577 -2.250 17.384 Atomic orbital electron populations 1.70114 1.07777 1.27541 1.51468 1.25842 0.95521 1.02888 0.94778 0.85506 0.79167 0.79431 0.77576 1.18605 1.20498 1.20905 1.21473 0.93080 0.91602 1.50431 0.92190 1.19030 0.93998 0.91906 0.94780 1.20225 0.94407 0.91764 0.89916 0.95476 1.60513 1.20375 1.23860 1.25639 1.21503 0.86700 0.95501 0.97279 0.92095 1.21979 0.96666 0.98957 1.00788 1.21202 0.96108 0.99357 0.97061 1.22389 0.95465 0.97569 0.96557 0.88810 1.22924 0.96016 0.87276 1.01615 1.62018 1.08572 1.24850 1.36412 1.22714 0.88802 0.97447 0.98631 1.21331 0.94247 0.94515 1.00159 0.90197 1.20754 0.95556 1.00128 0.95991 1.20131 0.97899 0.95517 0.94209 1.21040 0.96519 0.96050 0.98559 1.21432 0.99517 0.95044 0.98831 1.21406 0.99824 1.00871 0.92816 1.21321 0.97613 0.95542 0.99839 1.21186 1.01514 0.96365 0.96903 0.92884 0.99733 0.98089 0.83356 0.92084 0.93931 0.93078 0.91401 0.90440 0.91985 0.84146 0.94456 0.90511 0.91899 0.92057 0.86774 0.84395 0.83544 0.84033 0.86835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.80 13.29 21.45 0.28 -55.52 16 2 C 0.01 0.45 5.46 84.65 0.46 0.92 16 3 Si 0.96 43.46 29.54 68.60 2.03 45.49 16 4 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 6 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 7 C -0.53 -28.64 8.05 25.60 0.21 -28.44 16 8 H 0.06 3.12 7.66 -2.91 -0.02 3.10 16 9 C 0.04 2.10 4.54 29.85 0.14 2.23 16 10 C 0.15 6.10 2.01 44.17 0.09 6.19 16 11 H 0.03 1.17 7.21 -2.39 -0.02 1.15 16 12 N -0.67 -24.88 5.34 -473.02 -2.53 -27.41 16 13 C 0.10 3.01 2.10 44.97 0.09 3.10 16 14 H 0.06 1.94 6.32 -2.39 -0.02 1.93 16 15 C -0.14 -4.18 5.15 30.19 0.16 -4.03 16 16 C -0.10 -2.24 4.59 30.08 0.14 -2.10 16 17 C -0.10 -1.98 3.58 -9.65 -0.03 -2.02 16 18 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 19 C 0.05 0.88 6.91 86.97 0.60 1.49 16 20 N -0.69 -13.06 7.41 -503.08 -3.73 -16.78 16 21 C 0.05 1.11 6.54 86.35 0.56 1.68 16 22 C -0.08 -1.77 2.81 -10.88 -0.03 -1.80 16 23 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 24 C -0.09 -2.19 4.99 29.81 0.15 -2.04 16 25 C -0.08 -2.90 4.67 -19.87 -0.09 -2.99 16 26 C -0.10 -3.65 9.32 22.27 0.21 -3.44 16 27 C -0.13 -3.75 10.05 22.27 0.22 -3.53 16 28 C -0.13 -3.38 10.05 22.27 0.22 -3.15 16 29 C -0.13 -3.45 10.05 22.27 0.22 -3.23 16 30 C -0.14 -4.75 9.67 22.27 0.22 -4.54 16 31 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 32 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 33 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 34 H 0.35 14.13 7.05 -89.70 -0.63 13.50 16 35 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.04 1.43 7.67 -2.39 -0.02 1.41 16 37 H 0.05 1.18 7.20 -2.39 -0.02 1.16 16 38 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 40 H 0.06 0.97 7.76 -2.39 -0.02 0.95 16 41 H 0.34 5.67 8.91 -89.69 -0.80 4.87 16 42 H 0.04 0.87 6.16 -2.39 -0.01 0.85 16 43 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.11 4.25 7.73 -2.91 -0.02 4.23 16 47 H 0.14 3.21 8.06 -2.91 -0.02 3.18 16 48 H 0.15 2.74 8.06 -2.91 -0.02 2.71 16 49 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 50 H 0.11 3.69 8.04 -2.91 -0.02 3.66 16 Total: -1.00 -61.82 383.02 -0.93 -62.74 By element: Atomic # 1 Polarization: 37.69 SS G_CDS: -0.52 Total: 37.18 kcal Atomic # 6 Polarization: -49.23 SS G_CDS: 3.53 Total: -45.70 kcal Atomic # 7 Polarization: -93.74 SS G_CDS: -5.97 Total: -99.71 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -61.82 -0.93 -62.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592470777.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.662 kcal (2) G-P(sol) polarization free energy of solvation -61.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds