Wall clock time and date at job start Tue Mar 31 2020 10:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 H 1.09008 * 109.47017 * 54.99761 * 10 9 7 12 12 N 1.46904 * 109.47449 * 295.00105 * 10 9 7 13 13 C 1.46897 * 111.00568 * 154.99924 * 12 10 9 14 14 H 1.09000 * 109.67230 * 34.99450 * 13 12 10 15 15 C 1.53330 * 109.67137 * 274.49684 * 13 12 10 16 16 C 1.52824 * 108.10103 * 176.20251 * 15 13 12 17 17 C 1.50746 * 111.76091 * 58.86933 * 16 15 13 18 18 H 1.09006 * 108.78116 * 186.57207 * 17 16 15 19 19 C 1.53909 * 112.99400 * 65.12776 * 17 16 15 20 20 N 1.48231 * 104.03183 * 198.46579 * 19 17 16 21 21 C 1.47597 * 108.56127 * 23.33410 * 20 19 17 22 22 C 1.53987 * 113.91920 * 308.64946 * 17 16 15 23 23 H 1.08994 * 112.68223 * 281.03499 * 22 17 16 24 24 C 1.52589 * 109.67812 * 155.50201 * 13 12 10 25 25 C 1.50698 * 109.47721 * 174.99887 * 10 9 7 26 26 C 1.38239 * 120.00038 * 79.72172 * 25 10 9 27 27 C 1.38224 * 119.99999 * 179.79389 * 26 25 10 28 28 C 1.38237 * 120.00358 * 0.46474 * 27 26 25 29 29 C 1.38240 * 119.99440 * 359.77056 * 28 27 26 30 30 C 1.38233 * 120.00315 * 0.02562 * 29 28 27 31 31 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 32 32 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 33 33 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 34 34 H 1.00900 * 110.99432 * 31.03968 * 12 10 9 35 35 H 1.09000 * 109.73864 * 295.81585 * 15 13 12 36 36 H 1.09001 * 109.73823 * 56.52299 * 15 13 12 37 37 H 1.09004 * 108.99563 * 298.29326 * 16 15 13 38 38 H 1.09001 * 108.97036 * 179.43621 * 16 15 13 39 39 H 1.09004 * 110.51579 * 79.83276 * 19 17 16 40 40 H 1.08997 * 110.63976 * 317.16392 * 19 17 16 41 41 H 1.00897 * 111.00491 * 261.06805 * 20 19 17 42 42 H 1.09001 * 109.96961 * 241.63814 * 21 20 19 43 43 H 1.09006 * 110.00119 * 120.39369 * 21 20 19 44 44 H 1.08998 * 109.16253 * 302.47925 * 24 13 12 45 45 H 1.09003 * 109.15946 * 61.72037 * 24 13 12 46 46 H 1.07999 * 119.99523 * 0.02562 * 26 25 10 47 47 H 1.08008 * 120.00416 * 180.25298 * 27 26 25 48 48 H 1.07993 * 120.00582 * 179.78965 * 28 27 26 49 49 H 1.08005 * 119.99317 * 179.97438 * 29 28 27 50 50 H 1.08000 * 119.99807 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 1 2.9293 -3.5552 0.8424 12 7 3.0083 -3.6540 -1.2547 13 6 4.3094 -4.3143 -1.0841 14 1 4.2107 -5.1445 -0.3848 15 6 5.3332 -3.3066 -0.5480 16 6 6.6437 -4.0507 -0.2943 17 6 7.1696 -4.7001 -1.5490 18 1 8.0353 -5.3106 -1.2918 19 6 7.5719 -3.6812 -2.6301 20 7 7.6090 -4.4785 -3.8792 21 6 6.7483 -5.6648 -3.7053 22 6 6.1338 -5.5728 -2.2816 23 1 6.0082 -6.5524 -1.8205 24 6 4.8027 -4.8334 -2.4316 25 6 1.4958 -4.9637 0.1244 26 6 0.8892 -5.5205 -0.9861 27 6 0.2056 -6.7165 -0.8734 28 6 0.1201 -7.3511 0.3518 29 6 0.7226 -6.7919 1.4632 30 6 1.4099 -5.5979 1.3497 31 1 -0.4850 0.8401 0.0004 32 1 0.6239 -2.5567 0.8903 33 1 0.6246 -2.5571 -0.8897 34 1 3.1227 -2.7137 -1.6022 35 1 5.4943 -2.5188 -1.2838 36 1 4.9696 -2.8726 0.3834 37 1 6.4751 -4.8194 0.4599 38 1 7.3857 -3.3445 0.0782 39 1 8.5552 -3.2633 -2.4143 40 1 6.8287 -2.8874 -2.7055 41 1 8.5540 -4.7479 -4.1083 42 1 7.3437 -6.5733 -3.7958 43 1 5.9557 -5.6633 -4.4536 44 1 4.0597 -5.5145 -2.8464 45 1 4.9361 -3.9922 -3.1119 46 1 0.9528 -5.0228 -1.9424 47 1 -0.2649 -7.1536 -1.7418 48 1 -0.4169 -8.2838 0.4406 49 1 0.6554 -7.2875 2.4205 50 1 1.8801 -5.1608 2.2181 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592470779.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:05 Heat of formation + Delta-G solvation = 6.308000 kcal Electronic energy + Delta-G solvation = -27169.666696 eV Core-core repulsion = 23773.883747 eV Total energy + Delta-G solvation = -3395.782950 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.22010 -38.86245 -36.54086 -34.25730 -32.59052 -31.64726 -30.56010 -30.33870 -28.93766 -27.65420 -26.62462 -24.38644 -22.94790 -22.15824 -21.82857 -21.45034 -20.66633 -19.55122 -18.54187 -16.83396 -16.55768 -16.05166 -15.55480 -15.02555 -14.75282 -14.62523 -14.30524 -14.07902 -13.83104 -13.58576 -13.25332 -13.01227 -12.83485 -12.81622 -12.49493 -12.28880 -12.03845 -11.91459 -11.88690 -11.45568 -11.23205 -11.18255 -11.02479 -10.89448 -10.73245 -10.60849 -10.51956 -10.39338 -10.16623 -9.98600 -9.96247 -9.53064 -9.18005 -8.53157 -8.44277 -8.38318 -8.04377 -7.64380 -6.04474 -4.08417 1.88863 1.94284 3.29471 3.35076 3.36329 4.12729 4.30997 4.41705 4.47470 4.59237 4.72321 4.98989 5.13166 5.26221 5.31527 5.32958 5.35627 5.37571 5.43941 5.45928 5.50196 5.55752 5.63332 5.66891 5.71843 5.84697 5.90577 5.95780 6.01796 6.07140 6.09738 6.11728 6.28038 6.32271 6.35032 6.40060 6.47458 6.57627 6.62982 6.66612 6.75978 6.76443 6.94026 7.00882 7.25384 7.26571 7.49608 7.56807 7.61080 7.93979 8.03784 8.26142 8.32923 8.97060 9.55888 11.06066 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.008034 B = 0.005635 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3484.161565 B = 4968.056047 C = 7651.990208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.889 3.111 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.524 4.524 8 H 0.053 0.947 9 C 0.029 3.971 10 C 0.128 3.872 11 H 0.040 0.960 12 N -0.675 5.675 13 C 0.093 3.907 14 H 0.067 0.933 15 C -0.149 4.149 16 C -0.101 4.101 17 C -0.110 4.110 18 H 0.061 0.939 19 C 0.051 3.949 20 N -0.685 5.685 21 C 0.049 3.951 22 C -0.098 4.098 23 H 0.082 0.918 24 C -0.096 4.096 25 C -0.051 4.051 26 C -0.087 4.087 27 C -0.131 4.131 28 C -0.139 4.139 29 C -0.128 4.128 30 C -0.125 4.125 31 H 0.262 0.738 32 H 0.021 0.979 33 H 0.027 0.973 34 H 0.358 0.642 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.062 0.938 40 H 0.084 0.916 41 H 0.333 0.667 42 H 0.045 0.955 43 H 0.078 0.922 44 H 0.065 0.935 45 H 0.066 0.934 46 H 0.128 0.872 47 H 0.112 0.888 48 H 0.110 0.890 49 H 0.111 0.889 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.567 -13.333 -2.635 17.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.139 4.139 3 Si 0.716 3.284 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.563 4.563 8 H 0.072 0.928 9 C -0.008 4.008 10 C 0.019 3.981 11 H 0.058 0.942 12 N -0.307 5.307 13 C -0.018 4.018 14 H 0.085 0.915 15 C -0.188 4.188 16 C -0.139 4.139 17 C -0.130 4.130 18 H 0.079 0.921 19 C -0.077 4.077 20 N -0.313 5.313 21 C -0.080 4.080 22 C -0.118 4.118 23 H 0.100 0.900 24 C -0.134 4.134 25 C -0.052 4.052 26 C -0.105 4.105 27 C -0.149 4.149 28 C -0.157 4.157 29 C -0.146 4.146 30 C -0.143 4.143 31 H 0.071 0.929 32 H 0.040 0.960 33 H 0.046 0.954 34 H 0.180 0.820 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.102 0.898 41 H 0.148 0.852 42 H 0.063 0.937 43 H 0.096 0.904 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.146 0.854 47 H 0.130 0.870 48 H 0.128 0.872 49 H 0.129 0.871 50 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 10.598 -13.352 -3.278 17.359 hybrid contribution 1.465 1.027 1.280 2.199 sum 12.062 -12.325 -1.998 17.361 Atomic orbital electron populations 1.69953 1.06034 1.26781 1.49952 1.24963 0.94752 0.99066 0.95118 0.86718 0.79653 0.83407 0.78579 1.20145 1.21299 1.20385 1.21086 0.92667 0.90876 1.51630 0.92835 1.19243 0.93643 0.89838 0.98109 1.20618 0.94957 0.92329 0.90198 0.94205 1.60490 1.15556 1.25660 1.29030 1.21466 0.88302 0.95972 0.96026 0.91480 1.22340 0.95470 0.98927 1.02051 1.20821 0.97513 0.99337 0.96252 1.21804 0.97938 0.97248 0.96005 0.92099 1.22847 1.01160 0.96641 0.87100 1.61807 1.14175 1.20712 1.34604 1.22984 0.96821 0.91363 0.96875 1.22330 0.95790 0.98792 0.94914 0.90013 1.21460 0.94350 0.99999 0.97621 1.20229 0.96550 0.95773 0.92656 1.21047 0.95605 0.94542 0.99313 1.21121 1.00207 0.96385 0.97151 1.20960 1.01288 1.00067 0.93363 1.20962 0.99189 0.96414 0.98070 1.21036 1.00442 0.95458 0.97407 0.92859 0.96041 0.95420 0.81986 0.91555 0.91411 0.92288 0.92377 0.91981 0.89788 0.85194 0.93676 0.90420 0.91644 0.91517 0.85398 0.86957 0.87185 0.87050 0.86831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.99 13.29 55.43 0.74 -25.26 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.52 -13.80 8.12 -34.44 -0.28 -14.08 16 8 H 0.05 1.35 7.49 -52.49 -0.39 0.96 16 9 C 0.03 0.71 4.55 -27.88 -0.13 0.59 16 10 C 0.13 2.55 2.01 -68.86 -0.14 2.41 16 11 H 0.04 0.81 7.03 -51.92 -0.36 0.45 16 12 N -0.68 -12.07 5.32 -100.99 -0.54 -12.61 16 13 C 0.09 1.39 2.24 -67.75 -0.15 1.24 16 14 H 0.07 1.06 7.65 -51.93 -0.40 0.67 16 15 C -0.15 -2.13 5.06 -26.65 -0.13 -2.27 16 16 C -0.10 -1.18 5.37 -27.95 -0.15 -1.33 16 17 C -0.11 -1.18 2.81 -90.76 -0.25 -1.43 16 18 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 19 C 0.05 0.56 6.51 -2.62 -0.02 0.54 16 20 N -0.69 -7.28 7.41 -110.36 -0.82 -8.10 16 21 C 0.05 0.50 6.88 -2.20 -0.02 0.49 16 22 C -0.10 -1.09 3.60 -88.86 -0.32 -1.41 16 23 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 24 C -0.10 -1.28 4.24 -26.94 -0.11 -1.39 16 25 C -0.05 -0.94 4.62 -104.62 -0.48 -1.43 16 26 C -0.09 -1.52 9.32 -39.59 -0.37 -1.89 16 27 C -0.13 -2.00 10.05 -39.59 -0.40 -2.40 16 28 C -0.14 -2.00 10.05 -39.58 -0.40 -2.40 16 29 C -0.13 -1.92 10.05 -39.58 -0.40 -2.32 16 30 C -0.12 -2.12 9.67 -39.58 -0.38 -2.50 16 31 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.36 7.07 6.96 -39.29 -0.27 6.79 16 35 H 0.07 0.99 6.80 -51.93 -0.35 0.63 16 36 H 0.07 1.10 7.47 -51.93 -0.39 0.71 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 1.07 6.16 -51.93 -0.32 0.75 16 41 H 0.33 2.91 8.91 -39.29 -0.35 2.56 16 42 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.08 0.86 7.74 -51.93 -0.40 0.46 16 44 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.07 0.96 7.15 -51.93 -0.37 0.59 16 46 H 0.13 2.30 7.73 -52.49 -0.41 1.89 16 47 H 0.11 1.46 8.06 -52.48 -0.42 1.03 16 48 H 0.11 1.30 8.06 -52.49 -0.42 0.87 16 49 H 0.11 1.38 8.06 -52.48 -0.42 0.96 16 50 H 0.11 1.82 8.04 -52.49 -0.42 1.40 16 LS Contribution 382.36 15.07 5.76 5.76 Total: -1.00 -27.99 382.36 -12.75 -40.74 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: -8.65 Total: 11.39 kcal Atomic # 6 Polarization: -23.72 SS G_CDS: -4.23 Total: -27.95 kcal Atomic # 7 Polarization: -45.34 SS G_CDS: -0.62 Total: -45.96 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -27.99 -12.75 -40.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592470779.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.052 kcal (2) G-P(sol) polarization free energy of solvation -27.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds