Wall clock time and date at job start Tue Mar 31 2020 10:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 H 1.09008 * 109.47017 * 54.99761 * 10 9 7 12 12 N 1.46904 * 109.47449 * 295.00105 * 10 9 7 13 13 C 1.46897 * 111.00568 * 154.99924 * 12 10 9 14 14 H 1.09000 * 109.67230 * 34.99450 * 13 12 10 15 15 C 1.53330 * 109.67137 * 274.49684 * 13 12 10 16 16 C 1.52824 * 108.10103 * 176.20251 * 15 13 12 17 17 C 1.50746 * 111.76091 * 58.86933 * 16 15 13 18 18 H 1.09006 * 108.78116 * 186.57207 * 17 16 15 19 19 C 1.53909 * 112.99400 * 65.12776 * 17 16 15 20 20 N 1.48231 * 104.03183 * 198.46579 * 19 17 16 21 21 C 1.47597 * 108.56127 * 23.33410 * 20 19 17 22 22 C 1.53987 * 113.91920 * 308.64946 * 17 16 15 23 23 H 1.08994 * 112.68223 * 281.03499 * 22 17 16 24 24 C 1.52589 * 109.67812 * 155.50201 * 13 12 10 25 25 C 1.50698 * 109.47721 * 174.99887 * 10 9 7 26 26 C 1.38239 * 120.00038 * 79.72172 * 25 10 9 27 27 C 1.38224 * 119.99999 * 179.79389 * 26 25 10 28 28 C 1.38237 * 120.00358 * 0.46474 * 27 26 25 29 29 C 1.38240 * 119.99440 * 359.77056 * 28 27 26 30 30 C 1.38233 * 120.00315 * 0.02562 * 29 28 27 31 31 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 32 32 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 33 33 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 34 34 H 1.00900 * 110.99432 * 31.03968 * 12 10 9 35 35 H 1.09000 * 109.73864 * 295.81585 * 15 13 12 36 36 H 1.09001 * 109.73823 * 56.52299 * 15 13 12 37 37 H 1.09004 * 108.99563 * 298.29326 * 16 15 13 38 38 H 1.09001 * 108.97036 * 179.43621 * 16 15 13 39 39 H 1.09004 * 110.51579 * 79.83276 * 19 17 16 40 40 H 1.08997 * 110.63976 * 317.16392 * 19 17 16 41 41 H 1.00897 * 111.00491 * 261.06805 * 20 19 17 42 42 H 1.09001 * 109.96961 * 241.63814 * 21 20 19 43 43 H 1.09006 * 110.00119 * 120.39369 * 21 20 19 44 44 H 1.08998 * 109.16253 * 302.47925 * 24 13 12 45 45 H 1.09003 * 109.15946 * 61.72037 * 24 13 12 46 46 H 1.07999 * 119.99523 * 0.02562 * 26 25 10 47 47 H 1.08008 * 120.00416 * 180.25298 * 27 26 25 48 48 H 1.07993 * 120.00582 * 179.78965 * 28 27 26 49 49 H 1.08005 * 119.99317 * 179.97438 * 29 28 27 50 50 H 1.08000 * 119.99807 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 1 2.9293 -3.5552 0.8424 12 7 3.0083 -3.6540 -1.2547 13 6 4.3094 -4.3143 -1.0841 14 1 4.2107 -5.1445 -0.3848 15 6 5.3332 -3.3066 -0.5480 16 6 6.6437 -4.0507 -0.2943 17 6 7.1696 -4.7001 -1.5490 18 1 8.0353 -5.3106 -1.2918 19 6 7.5719 -3.6812 -2.6301 20 7 7.6090 -4.4785 -3.8792 21 6 6.7483 -5.6648 -3.7053 22 6 6.1338 -5.5728 -2.2816 23 1 6.0082 -6.5524 -1.8205 24 6 4.8027 -4.8334 -2.4316 25 6 1.4958 -4.9637 0.1244 26 6 0.8892 -5.5205 -0.9861 27 6 0.2056 -6.7165 -0.8734 28 6 0.1201 -7.3511 0.3518 29 6 0.7226 -6.7919 1.4632 30 6 1.4099 -5.5979 1.3497 31 1 -0.4850 0.8401 0.0004 32 1 0.6239 -2.5567 0.8903 33 1 0.6246 -2.5571 -0.8897 34 1 3.1227 -2.7137 -1.6022 35 1 5.4943 -2.5188 -1.2838 36 1 4.9696 -2.8726 0.3834 37 1 6.4751 -4.8194 0.4599 38 1 7.3857 -3.3445 0.0782 39 1 8.5552 -3.2633 -2.4143 40 1 6.8287 -2.8874 -2.7055 41 1 8.5540 -4.7479 -4.1083 42 1 7.3437 -6.5733 -3.7958 43 1 5.9557 -5.6633 -4.4536 44 1 4.0597 -5.5145 -2.8464 45 1 4.9361 -3.9922 -3.1119 46 1 0.9528 -5.0228 -1.9424 47 1 -0.2649 -7.1536 -1.7418 48 1 -0.4169 -8.2838 0.4406 49 1 0.6554 -7.2875 2.4205 50 1 1.8801 -5.1608 2.2181 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592470779.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:04 Heat of formation + Delta-G solvation = -9.541288 kcal Electronic energy + Delta-G solvation = -27170.353973 eV Core-core repulsion = 23773.883747 eV Total energy + Delta-G solvation = -3396.470226 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.24811 -40.15223 -37.84741 -35.69127 -34.39560 -32.81314 -31.71902 -31.55784 -30.53379 -28.90629 -27.80461 -26.11589 -23.96623 -23.68444 -23.21889 -22.53311 -21.74818 -20.98000 -19.58660 -18.55147 -17.70048 -17.43171 -16.76587 -16.56571 -16.31168 -15.98985 -15.60873 -15.10016 -15.04995 -14.70099 -14.54121 -14.36706 -14.08952 -14.00569 -13.81194 -13.63692 -13.48862 -13.18894 -13.06926 -12.86743 -12.81314 -12.52883 -12.43622 -12.38563 -12.13641 -12.04177 -11.81578 -11.73109 -11.46322 -11.26604 -11.18369 -11.04641 -11.00896 -10.57211 -9.68040 -9.41934 -9.34273 -9.10957 -8.18950 -6.29886 0.60234 0.66366 1.38945 1.40730 1.48200 2.39385 3.02261 3.12473 3.29408 3.36409 3.60941 3.80434 3.89048 4.08814 4.13067 4.14914 4.27182 4.29220 4.30735 4.42004 4.47561 4.51000 4.55478 4.57363 4.68918 4.69938 4.74319 4.80719 4.83497 4.89033 4.95247 4.97259 5.05851 5.15491 5.21881 5.23927 5.29203 5.31251 5.32559 5.44269 5.48435 5.50153 5.58058 5.68854 5.73875 5.82080 5.90786 5.93012 6.18090 6.27743 6.47517 6.57138 6.67686 6.84441 7.38787 8.92237 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.008034 B = 0.005635 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3484.161565 B = 4968.056047 C = 7651.990208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.007 3.993 3 Si 0.957 3.043 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.270 1.270 7 C -0.530 4.530 8 H 0.061 0.939 9 C 0.042 3.958 10 C 0.146 3.854 11 H 0.029 0.971 12 N -0.675 5.675 13 C 0.098 3.902 14 H 0.061 0.939 15 C -0.144 4.144 16 C -0.095 4.095 17 C -0.104 4.104 18 H 0.082 0.918 19 C 0.053 3.947 20 N -0.696 5.696 21 C 0.052 3.948 22 C -0.095 4.095 23 H 0.092 0.908 24 C -0.085 4.085 25 C -0.077 4.077 26 C -0.104 4.104 27 C -0.131 4.131 28 C -0.131 4.131 29 C -0.125 4.125 30 C -0.140 4.140 31 H 0.262 0.738 32 H -0.013 1.013 33 H -0.004 1.004 34 H 0.344 0.656 35 H 0.057 0.943 36 H 0.044 0.956 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.059 0.941 41 H 0.347 0.653 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.057 0.943 45 H 0.051 0.949 46 H 0.113 0.887 47 H 0.138 0.862 48 H 0.147 0.853 49 H 0.143 0.857 50 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.497 -15.285 -2.513 20.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.191 4.191 3 Si 0.782 3.218 4 H -0.191 1.191 5 H -0.212 1.212 6 H -0.195 1.195 7 C -0.568 4.568 8 H 0.079 0.921 9 C 0.005 3.995 10 C 0.036 3.964 11 H 0.047 0.953 12 N -0.306 5.306 13 C -0.012 4.012 14 H 0.080 0.920 15 C -0.183 4.183 16 C -0.133 4.133 17 C -0.124 4.124 18 H 0.100 0.900 19 C -0.076 4.076 20 N -0.325 5.325 21 C -0.077 4.077 22 C -0.115 4.115 23 H 0.110 0.890 24 C -0.123 4.123 25 C -0.077 4.077 26 C -0.123 4.123 27 C -0.149 4.149 28 C -0.149 4.149 29 C -0.143 4.143 30 C -0.159 4.159 31 H 0.071 0.929 32 H 0.005 0.995 33 H 0.014 0.986 34 H 0.164 0.836 35 H 0.076 0.924 36 H 0.062 0.938 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.078 0.922 41 H 0.163 0.837 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.075 0.925 45 H 0.070 0.930 46 H 0.131 0.869 47 H 0.156 0.844 48 H 0.165 0.835 49 H 0.160 0.840 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 12.556 -15.328 -3.158 20.064 hybrid contribution 0.798 1.563 1.238 2.148 sum 13.354 -13.764 -1.920 19.274 Atomic orbital electron populations 1.70099 1.07783 1.27653 1.51404 1.25850 0.95541 1.02912 0.94798 0.85625 0.78355 0.78739 0.79085 1.19089 1.21174 1.19468 1.21430 0.93126 0.91626 1.50570 0.92096 1.19004 0.93830 0.91908 0.94805 1.20233 0.93828 0.91683 0.90616 0.95265 1.60537 1.17422 1.24675 1.27929 1.21480 0.87015 0.95601 0.97089 0.92040 1.22233 0.96886 0.98733 1.00441 1.20774 0.96005 0.99407 0.97132 1.21766 0.98279 0.97181 0.95182 0.89997 1.22772 1.01343 0.96191 0.87328 1.61711 1.15216 1.20977 1.34567 1.22920 0.96818 0.92226 0.95712 1.22319 0.94332 0.98902 0.95966 0.89008 1.21340 0.95689 0.99418 0.95852 1.20136 0.98007 0.95590 0.94006 1.21033 0.96908 0.95890 0.98446 1.21424 0.99306 0.95312 0.98828 1.21404 1.00192 1.00921 0.92413 1.21332 0.97806 0.95359 0.99808 1.21194 1.01322 0.96627 0.96738 0.92894 0.99475 0.98580 0.83580 0.92384 0.93753 0.91882 0.91259 0.90297 0.92221 0.83682 0.91444 0.91569 0.92471 0.92976 0.86933 0.84425 0.83496 0.83950 0.86722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.54 13.29 21.45 0.28 -56.25 16 2 C 0.01 0.42 5.46 84.66 0.46 0.88 16 3 Si 0.96 44.03 29.54 68.60 2.03 46.06 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 5 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.53 -29.16 8.12 25.60 0.21 -28.95 16 8 H 0.06 3.19 7.49 -2.91 -0.02 3.17 16 9 C 0.04 2.22 4.55 29.85 0.14 2.35 16 10 C 0.15 6.18 2.01 44.17 0.09 6.27 16 11 H 0.03 1.27 7.03 -2.38 -0.02 1.26 16 12 N -0.68 -25.67 5.32 -473.44 -2.52 -28.18 16 13 C 0.10 3.03 2.24 44.89 0.10 3.13 16 14 H 0.06 1.98 7.65 -2.39 -0.02 1.96 16 15 C -0.14 -4.21 5.06 30.65 0.16 -4.06 16 16 C -0.09 -2.09 5.37 29.80 0.16 -1.93 16 17 C -0.10 -2.00 2.81 -10.89 -0.03 -2.03 16 18 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 19 C 0.05 1.06 6.51 86.35 0.56 1.62 16 20 N -0.70 -13.42 7.41 -503.05 -3.73 -17.14 16 21 C 0.05 0.98 6.88 86.97 0.60 1.58 16 22 C -0.10 -1.96 3.60 -9.66 -0.03 -2.00 16 23 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 24 C -0.08 -2.27 4.24 30.46 0.13 -2.14 16 25 C -0.08 -2.93 4.62 -19.87 -0.09 -3.03 16 26 C -0.10 -3.76 9.32 22.27 0.21 -3.55 16 27 C -0.13 -3.82 10.05 22.27 0.22 -3.60 16 28 C -0.13 -3.41 10.05 22.27 0.22 -3.19 16 29 C -0.13 -3.48 10.05 22.27 0.22 -3.26 16 30 C -0.14 -4.77 9.67 22.27 0.22 -4.56 16 31 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 32 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 33 H 0.00 -0.25 8.14 -2.39 -0.02 -0.26 16 34 H 0.34 14.53 6.96 -89.69 -0.62 13.90 16 35 H 0.06 1.79 6.80 -2.39 -0.02 1.77 16 36 H 0.04 1.49 7.47 -2.39 -0.02 1.47 16 37 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 40 H 0.06 1.50 6.16 -2.39 -0.01 1.48 16 41 H 0.35 5.11 8.91 -89.70 -0.80 4.31 16 42 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.07 1.40 7.74 -2.38 -0.02 1.38 16 44 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.05 1.55 7.15 -2.39 -0.02 1.53 16 46 H 0.11 4.29 7.73 -2.91 -0.02 4.27 16 47 H 0.14 3.26 8.06 -2.91 -0.02 3.23 16 48 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 49 H 0.14 3.04 8.06 -2.91 -0.02 3.02 16 50 H 0.11 3.75 8.04 -2.91 -0.02 3.73 16 Total: -1.00 -63.57 382.36 -0.90 -64.48 By element: Atomic # 1 Polarization: 38.02 SS G_CDS: -0.51 Total: 37.51 kcal Atomic # 6 Polarization: -50.00 SS G_CDS: 3.54 Total: -46.46 kcal Atomic # 7 Polarization: -95.62 SS G_CDS: -5.96 Total: -101.58 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -63.57 -0.90 -64.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592470779.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.935 kcal (2) G-P(sol) polarization free energy of solvation -63.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds