Wall clock time and date at job start Tue Mar 31 2020 11:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38148 * 120.02768 * 2 1 4 4 C 1.38453 * 120.21003 * 179.70023 * 3 2 1 5 5 C 1.38260 * 119.84872 * 0.28254 * 4 3 2 6 6 C 1.38451 * 119.85499 * 0.04679 * 5 4 3 7 7 C 1.50698 * 119.89433 * 179.97438 * 6 5 4 8 8 C 1.38149 * 120.20934 * 0.02562 * 6 5 4 9 9 C 1.51368 * 109.75153 * 180.02562 * 5 4 3 10 10 H 1.09004 * 110.30657 * 258.27214 * 9 5 4 11 11 N 1.46905 * 110.30235 * 136.12054 * 9 5 4 12 12 C 1.46897 * 110.99861 * 155.00519 * 11 9 5 13 13 C 1.53044 * 109.45584 * 275.06531 * 12 11 9 14 14 C 1.53191 * 109.31112 * 178.61946 * 13 12 11 15 15 N 1.46924 * 108.77994 * 54.63514 * 14 13 12 16 16 C 1.36938 * 120.63460 * 126.36778 * 15 14 13 17 17 H 1.08001 * 120.00223 * 208.02071 * 16 15 14 18 18 C 1.38811 * 119.99711 * 28.02503 * 16 15 14 19 19 N 1.31619 * 120.00073 * 17.52038 * 18 16 15 20 20 Si 1.86802 * 119.99869 * 197.52598 * 18 16 15 21 21 H 1.48501 * 109.47212 * 94.06242 * 20 18 16 22 22 H 1.48500 * 109.47068 * 214.06766 * 20 18 16 23 23 H 1.48503 * 109.47027 * 334.06418 * 20 18 16 24 24 C 1.46926 * 118.73797 * 306.39454 * 15 14 13 25 25 C 1.53046 * 109.45754 * 155.00107 * 12 11 9 26 26 C 1.54350 * 105.17403 * 17.19577 * 9 5 4 27 27 C 1.51372 * 130.39964 * 180.31606 * 4 3 2 28 28 H 1.08999 * 109.47469 * 89.99930 * 1 2 3 29 29 H 1.08998 * 109.47010 * 209.99972 * 1 2 3 30 30 H 1.09002 * 109.47099 * 329.99537 * 1 2 3 31 31 H 1.07997 * 119.89353 * 359.97438 * 3 2 1 32 32 H 1.08994 * 109.47140 * 90.00122 * 7 6 5 33 33 H 1.09005 * 109.46985 * 209.99842 * 7 6 5 34 34 H 1.09001 * 109.47303 * 329.99417 * 7 6 5 35 35 H 1.08004 * 120.03074 * 179.97438 * 8 6 5 36 36 H 1.00896 * 110.99954 * 31.04632 * 11 9 5 37 37 H 1.08990 * 109.46594 * 35.02348 * 12 11 9 38 38 H 1.09003 * 109.49723 * 298.56675 * 13 12 11 39 39 H 1.08992 * 109.49974 * 58.66574 * 13 12 11 40 40 H 1.09001 * 109.58834 * 294.84637 * 14 13 12 41 41 H 1.09001 * 109.70687 * 174.49043 * 14 13 12 42 42 H 0.97002 * 119.99677 * 180.02562 * 19 18 16 43 43 H 1.09005 * 109.58639 * 293.82015 * 24 15 14 44 44 H 1.08999 * 109.70797 * 173.46644 * 24 15 14 45 45 H 1.08995 * 109.49669 * 301.32976 * 25 12 11 46 46 H 1.08994 * 109.49837 * 61.40039 * 25 12 11 47 47 H 1.08997 * 110.82106 * 91.86361 * 26 9 5 48 48 H 1.08999 * 110.82308 * 215.41461 * 26 9 5 49 49 H 1.08998 * 110.30370 * 281.70937 * 27 4 3 50 50 H 1.09003 * 110.30108 * 43.85655 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1961 0.0000 4 6 3.5829 1.2005 0.0063 5 6 4.2748 0.0035 0.0066 6 6 3.5802 -1.1942 -0.0003 7 6 4.3336 -2.4993 -0.0005 8 6 2.1988 -1.1965 -0.0080 9 6 5.7642 0.2736 0.0146 10 1 6.1784 0.1392 -0.9847 11 7 6.4383 -0.6150 0.9707 12 6 7.8466 -0.8129 0.6026 13 6 7.9512 -1.9433 -0.4238 14 6 9.4170 -2.1237 -0.8310 15 7 10.2221 -2.3321 0.3802 16 6 11.0453 -3.4207 0.4921 17 1 11.2732 -3.8276 1.4662 18 6 11.5870 -4.0011 -0.6466 19 7 11.6061 -3.3330 -1.7804 20 14 12.2887 -5.7307 -0.5697 21 1 11.2454 -6.7066 -0.9749 22 1 13.4491 -5.8354 -1.4904 23 1 12.7295 -6.0248 0.8176 24 6 10.1269 -1.3506 1.4693 25 6 8.6531 -1.1787 1.8508 26 6 5.9056 1.7448 0.4594 27 6 4.5602 2.3564 0.0140 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6571 2.1306 -0.0004 32 1 4.5102 -2.8170 1.0271 33 1 3.7468 -3.2574 -0.5194 34 1 5.2884 -2.3677 -0.5094 35 1 1.6598 -2.1324 -0.0138 36 1 5.9564 -1.4983 1.0450 37 1 8.2420 0.1066 0.1714 38 1 7.5790 -2.8689 0.0152 39 1 7.3577 -1.6925 -1.3029 40 1 9.7642 -1.2312 -1.3515 41 1 9.5124 -2.9893 -1.4866 42 1 11.9843 -3.7388 -2.5761 43 1 10.5319 -0.3949 1.1364 44 1 10.6891 -1.7046 2.3334 45 1 8.5591 -0.3838 2.5906 46 1 8.2740 -2.1113 2.2686 47 1 6.0230 1.8130 1.5409 48 1 6.7385 2.2262 -0.0529 49 1 4.6505 2.7820 -0.9853 50 1 4.2383 3.1191 0.7231 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594495412.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:19 Heat of formation + Delta-G solvation = 16.639705 kcal Electronic energy + Delta-G solvation = -26806.228009 eV Core-core repulsion = 23410.893076 eV Total energy + Delta-G solvation = -3395.334933 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.49348 -39.54648 -37.53089 -35.86014 -34.52719 -33.49748 -31.62631 -31.32815 -30.29736 -28.40963 -28.03105 -26.59526 -25.56376 -23.84391 -23.26623 -22.31351 -21.43504 -20.88960 -20.57631 -18.79004 -17.25384 -16.97802 -16.73479 -16.64756 -15.91007 -15.38729 -15.33680 -15.04702 -14.96691 -14.77565 -14.68508 -14.60509 -14.04702 -13.96946 -13.94358 -13.68893 -13.40579 -13.20039 -13.01522 -12.83907 -12.70190 -12.60216 -12.49607 -12.48176 -12.25256 -12.19438 -11.96980 -11.87853 -11.81585 -11.70663 -11.48420 -11.37320 -11.14734 -10.57778 -9.58474 -9.46643 -9.07195 -8.69646 -7.88815 -5.34126 0.39657 0.45695 1.45327 1.46534 1.56044 2.50047 2.72306 3.21086 3.30821 3.50090 3.55409 3.68020 3.90753 3.95922 4.05274 4.08988 4.19788 4.29820 4.34759 4.36781 4.41737 4.50576 4.54547 4.62027 4.66711 4.68520 4.69214 4.79661 4.82686 4.85031 4.86821 4.93513 4.99654 5.03111 5.07819 5.10247 5.20531 5.23404 5.30363 5.32520 5.35826 5.39408 5.47938 5.55742 5.62731 5.67797 5.68965 5.75833 6.10706 6.17283 6.37762 6.47161 7.13265 7.84778 8.36975 9.17502 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.022392 B = 0.003044 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.123651 B = 9196.330002 C = 9883.059046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.086 4.086 3 C -0.124 4.124 4 C -0.092 4.092 5 C -0.125 4.125 6 C -0.076 4.076 7 C -0.124 4.124 8 C -0.134 4.134 9 C 0.125 3.875 10 H 0.045 0.955 11 N -0.677 5.677 12 C 0.106 3.894 13 C -0.150 4.150 14 C 0.184 3.816 15 N -0.610 5.610 16 C -0.261 4.261 17 H 0.067 0.933 18 C -0.052 4.052 19 N -0.936 5.936 20 Si 0.967 3.033 21 H -0.286 1.286 22 H -0.295 1.295 23 H -0.267 1.267 24 C 0.141 3.859 25 C -0.103 4.103 26 C -0.106 4.106 27 C -0.076 4.076 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.138 0.862 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.053 0.947 35 H 0.138 0.862 36 H 0.343 0.657 37 H 0.065 0.935 38 H 0.051 0.949 39 H 0.053 0.947 40 H -0.006 1.006 41 H 0.051 0.949 42 H 0.249 0.751 43 H 0.014 0.986 44 H 0.056 0.944 45 H 0.079 0.921 46 H 0.050 0.950 47 H 0.079 0.921 48 H 0.076 0.924 49 H 0.088 0.912 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.441 9.623 4.041 24.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.086 4.086 3 C -0.142 4.142 4 C -0.092 4.092 5 C -0.126 4.126 6 C -0.076 4.076 7 C -0.181 4.181 8 C -0.152 4.152 9 C 0.015 3.985 10 H 0.062 0.938 11 N -0.309 5.309 12 C -0.004 4.004 13 C -0.190 4.190 14 C 0.057 3.943 15 N -0.333 5.333 16 C -0.392 4.392 17 H 0.084 0.916 18 C -0.247 4.247 19 N -0.582 5.582 20 Si 0.795 3.205 21 H -0.213 1.213 22 H -0.221 1.221 23 H -0.192 1.192 24 C 0.015 3.985 25 C -0.143 4.143 26 C -0.144 4.144 27 C -0.113 4.113 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.156 0.844 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.072 0.928 35 H 0.155 0.845 36 H 0.165 0.835 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.012 0.988 41 H 0.069 0.931 42 H 0.058 0.942 43 H 0.032 0.968 44 H 0.074 0.926 45 H 0.097 0.903 46 H 0.069 0.931 47 H 0.098 0.902 48 H 0.095 0.905 49 H 0.106 0.894 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -22.228 10.077 4.381 24.795 hybrid contribution 0.871 -1.657 -1.264 2.259 sum -21.357 8.420 3.117 23.167 Atomic orbital electron populations 1.20805 0.88996 1.03689 1.03074 1.20144 0.97496 0.92502 0.98507 1.20726 0.92363 0.98628 1.02516 1.20785 0.94184 0.95641 0.98630 1.20573 0.95204 0.93872 1.02904 1.19609 0.94223 0.94221 0.99588 1.20938 0.99775 0.94620 1.02744 1.21033 0.92657 0.98785 1.02713 1.21049 0.88977 0.94706 0.93750 0.93764 1.60961 1.01890 1.19201 1.48869 1.21349 0.88378 0.96371 0.94338 1.22650 0.98255 0.99115 0.99001 1.20451 0.87516 0.97888 0.88411 1.44318 1.47780 1.24989 1.16233 1.19539 1.21744 1.04758 0.93121 0.91555 1.25807 0.99701 1.02660 0.96564 1.70197 1.49832 1.37017 1.01158 0.85259 0.77249 0.80347 0.77662 1.21316 1.22142 1.19160 1.21071 0.95117 0.91372 0.90903 1.21800 0.94681 1.00974 0.96831 1.22366 0.97280 0.92530 1.02236 1.21064 0.91959 0.95493 1.02776 0.90361 0.90754 0.90478 0.84385 0.90392 0.89954 0.92779 0.84454 0.83469 0.91668 0.92982 0.92809 0.98830 0.93093 0.94152 0.96808 0.92577 0.90253 0.93069 0.90225 0.90521 0.89367 0.89025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 10.01 71.24 0.71 -0.58 16 2 C -0.09 -1.60 5.88 -19.89 -0.12 -1.72 16 3 C -0.12 -2.41 9.70 22.30 0.22 -2.19 16 4 C -0.09 -2.06 6.14 -19.59 -0.12 -2.18 16 5 C -0.13 -3.20 5.67 -19.60 -0.11 -3.32 16 6 C -0.08 -1.84 5.84 -19.84 -0.12 -1.96 16 7 C -0.12 -2.85 8.25 71.24 0.59 -2.26 16 8 C -0.13 -2.77 9.35 22.24 0.21 -2.56 16 9 C 0.12 3.34 2.54 44.84 0.11 3.45 16 10 H 0.04 1.32 7.19 -2.39 -0.02 1.30 16 11 N -0.68 -19.66 6.00 -469.70 -2.82 -22.48 16 12 C 0.11 3.56 2.29 44.95 0.10 3.66 16 13 C -0.15 -5.77 4.49 30.67 0.14 -5.63 16 14 C 0.18 9.10 5.31 86.36 0.46 9.56 16 15 N -0.61 -31.29 2.99 -699.08 -2.09 -33.39 16 16 C -0.26 -14.65 9.58 84.03 0.81 -13.84 16 17 H 0.07 3.63 7.89 -2.91 -0.02 3.60 16 18 C -0.05 -2.96 4.90 84.86 0.42 -2.54 16 19 N -0.94 -56.33 11.22 21.65 0.24 -56.09 16 20 Si 0.97 45.49 29.59 68.60 2.03 47.52 16 21 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 22 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 23 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 24 C 0.14 5.99 6.51 86.36 0.56 6.55 16 25 C -0.10 -3.61 5.69 30.68 0.17 -3.43 16 26 C -0.11 -2.39 6.72 31.51 0.21 -2.18 16 27 C -0.08 -1.43 6.77 30.52 0.21 -1.22 16 28 H 0.08 0.80 8.14 -2.39 -0.02 0.79 16 29 H 0.07 0.76 8.09 -2.39 -0.02 0.74 16 30 H 0.08 0.74 8.09 -2.39 -0.02 0.72 16 31 H 0.14 2.00 8.06 -2.91 -0.02 1.97 16 32 H 0.08 1.72 7.59 -2.39 -0.02 1.70 16 33 H 0.08 1.60 8.08 -2.38 -0.02 1.59 16 34 H 0.05 1.42 5.94 -2.39 -0.01 1.41 16 35 H 0.14 2.27 8.06 -2.91 -0.02 2.24 16 36 H 0.34 9.91 4.59 -89.70 -0.41 9.50 16 37 H 0.07 2.28 7.83 -2.39 -0.02 2.26 16 38 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.05 1.94 7.28 -2.39 -0.02 1.93 16 40 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 41 H 0.05 2.86 6.06 -2.39 -0.01 2.85 16 42 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 43 H 0.01 0.60 8.14 -2.38 -0.02 0.58 16 44 H 0.06 2.32 7.94 -2.39 -0.02 2.30 16 45 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 46 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 47 H 0.08 1.87 8.09 -2.39 -0.02 1.85 16 48 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 49 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 50 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -64.71 379.12 2.31 -62.40 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: 0.50 Total: 24.43 kcal Atomic # 6 Polarization: -26.84 SS G_CDS: 4.45 Total: -22.39 kcal Atomic # 7 Polarization: -107.29 SS G_CDS: -4.67 Total: -111.96 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -64.71 2.31 -62.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594495412.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.039 kcal (2) G-P(sol) polarization free energy of solvation -64.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds