Wall clock time and date at job start Tue Mar 31 2020 11:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86794 * 119.99945 * 2 1 4 4 H 1.48499 * 109.47204 * 276.76037 * 3 2 1 5 5 H 1.48502 * 109.47338 * 36.76258 * 3 2 1 6 6 H 1.48501 * 109.46943 * 156.75986 * 3 2 1 7 7 C 1.37875 * 119.99505 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00682 * 347.97070 * 7 2 1 9 9 C 1.50708 * 119.99688 * 167.97789 * 7 2 1 10 10 C 1.52997 * 115.55831 * 320.29364 * 9 7 2 11 11 N 1.46504 * 109.47160 * 269.02635 * 10 9 7 12 12 C 1.40017 * 120.00036 * 185.14591 * 11 10 9 13 13 C 1.38664 * 120.09771 * 354.48833 * 12 11 10 14 14 C 1.38261 * 119.99973 * 180.02562 * 13 12 11 15 15 C 1.38255 * 120.19590 * 359.97438 * 14 13 12 16 16 C 1.38268 * 120.18988 * 359.97438 * 15 14 13 17 17 C 1.38662 * 119.99869 * 359.75818 * 16 15 14 18 18 N 1.40017 * 120.09541 * 180.26139 * 17 16 15 19 19 C 1.48003 * 111.00218 * 63.44936 * 18 17 16 20 20 C 1.50443 * 112.82427 * 191.34724 * 19 18 17 21 21 C 1.54318 * 108.50224 * 93.72618 * 20 19 18 22 22 C 1.45879 * 112.18442 * 281.46063 * 21 20 19 23 23 C 1.54308 * 112.18288 * 61.11822 * 22 21 20 24 24 C 1.48005 * 111.00086 * 294.72584 * 18 17 16 25 25 C 1.52994 * 117.49702 * 174.60611 * 9 7 2 26 26 C 1.53003 * 60.03250 * 252.49817 * 25 9 7 27 27 H 0.96998 * 119.99516 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47347 * 29.02869 * 10 9 7 29 29 H 1.09001 * 109.46644 * 149.02720 * 10 9 7 30 30 H 0.97001 * 119.99792 * 5.14579 * 11 10 9 31 31 H 1.08005 * 119.99517 * 359.97438 * 13 12 11 32 32 H 1.08002 * 119.90216 * 179.97438 * 14 13 12 33 33 H 1.07999 * 119.90668 * 179.97438 * 15 14 13 34 34 H 1.07998 * 119.99819 * 180.02562 * 16 15 14 35 35 H 1.09005 * 108.80800 * 312.20522 * 19 18 17 36 36 H 1.08995 * 108.81178 * 70.48459 * 19 18 17 37 37 H 1.08994 * 109.63683 * 334.02332 * 20 19 18 38 38 H 1.09006 * 109.63003 * 213.42744 * 20 19 18 39 39 H 1.08999 * 108.93545 * 160.76265 * 21 20 19 40 40 H 1.09001 * 108.93722 * 42.15725 * 21 20 19 41 41 H 1.09003 * 108.93650 * 300.42338 * 22 21 20 42 42 H 1.08997 * 108.93605 * 181.81914 * 22 21 20 43 43 H 1.09001 * 109.63395 * 161.76039 * 23 22 21 44 44 H 1.09003 * 109.63629 * 41.16710 * 23 22 21 45 45 H 1.09002 * 108.81023 * 205.70399 * 24 18 17 46 46 H 1.08996 * 108.80820 * 323.97711 * 24 18 17 47 47 H 1.08996 * 117.50193 * 359.97438 * 25 9 7 48 48 H 1.09008 * 117.49825 * 144.99592 * 25 9 7 49 49 H 1.08996 * 117.49526 * 107.50381 * 26 25 9 50 50 H 1.09003 * 117.49603 * 252.52269 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3540 2.1288 -1.3903 5 1 1.5254 2.6072 0.8379 6 1 3.6108 1.4031 0.5525 7 6 2.0045 -1.1941 -0.0005 8 1 1.4823 -2.1192 0.1940 9 6 3.4868 -1.2083 -0.2724 10 6 3.9669 -0.2499 -1.3641 11 7 3.9589 -0.9389 -2.6569 12 6 4.4618 -0.2973 -3.7953 13 6 4.8621 1.0285 -3.7265 14 6 5.3580 1.6602 -4.8520 15 6 5.4570 0.9737 -6.0479 16 6 5.0611 -0.3488 -6.1253 17 6 4.5679 -0.9918 -5.0001 18 7 4.1716 -2.3326 -5.0749 19 6 5.3195 -3.2076 -5.4024 20 6 4.9024 -4.6082 -5.7597 21 6 4.7538 -4.6988 -7.2930 22 6 3.4987 -4.1203 -7.7600 23 6 3.3848 -2.6204 -7.4158 24 6 3.0011 -2.4909 -5.9669 25 6 4.2174 -2.5455 -0.1350 26 6 4.4212 -1.4518 0.9153 27 1 -0.4849 0.8401 0.0004 28 1 3.3023 0.6129 -1.4081 29 1 4.9795 0.0827 -1.1358 30 1 3.6052 -1.8396 -2.7243 31 1 4.7858 1.5679 -2.7939 32 1 5.6689 2.6931 -4.7967 33 1 5.8446 1.4719 -6.9243 34 1 5.1402 -0.8822 -7.0610 35 1 5.8609 -2.7765 -6.2445 36 1 5.9870 -3.2484 -4.5418 37 1 3.9486 -4.8387 -5.2852 38 1 5.6621 -5.3137 -5.4231 39 1 4.7929 -5.7466 -7.5909 40 1 5.5834 -4.1686 -7.7608 41 1 2.6690 -4.6537 -7.2959 42 1 3.4342 -4.2411 -8.8413 43 1 2.6198 -2.1585 -8.0399 44 1 4.3443 -2.1317 -7.5856 45 1 2.4497 -3.3824 -5.6682 46 1 2.3515 -1.6233 -5.8515 47 1 3.6261 -3.4149 0.1525 48 1 5.0399 -2.7427 -0.8226 49 1 3.9640 -1.6017 1.8933 50 1 5.3778 -0.9291 0.9185 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594702187.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:15 Heat of formation + Delta-G solvation = 67.783088 kcal Electronic energy + Delta-G solvation = -27454.496683 eV Core-core repulsion = 24061.379493 eV Total energy + Delta-G solvation = -3393.117190 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.26669 -38.33301 -37.20580 -34.39564 -34.08120 -32.23629 -32.16867 -29.62084 -29.07321 -26.64528 -25.98198 -24.97787 -24.72109 -21.84953 -21.71763 -21.20255 -20.31343 -19.69684 -19.07061 -17.12467 -16.68580 -16.34971 -15.84167 -15.50027 -15.22849 -15.13846 -14.29065 -14.03800 -13.76350 -13.60265 -13.50320 -13.28472 -13.10481 -13.01829 -12.86490 -12.50096 -12.22245 -12.08860 -11.91078 -11.68146 -11.35697 -11.15441 -10.97080 -10.74000 -10.69108 -10.65115 -10.51553 -10.39434 -10.27524 -10.19411 -9.58531 -9.49071 -9.22473 -8.82456 -8.46031 -8.39463 -8.16129 -6.77100 -6.19097 -4.13758 1.65246 2.00762 3.20657 3.33631 3.35935 3.87653 4.10114 4.15860 4.32981 4.56357 4.63620 4.84444 4.86588 5.05652 5.11671 5.21049 5.30505 5.34922 5.37786 5.39912 5.57420 5.59374 5.65433 5.69270 5.80181 5.85072 5.90598 5.92730 5.93716 5.98859 6.02672 6.05974 6.08845 6.15242 6.21035 6.21886 6.26992 6.30823 6.46192 6.51852 6.59720 6.71355 6.75150 6.91859 6.93305 7.12094 7.16342 7.22513 7.56421 7.68316 8.06303 8.43649 8.52823 8.85792 9.44529 10.92486 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.013772 B = 0.004573 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.597259 B = 6120.797162 C = 6824.998943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.078 3.922 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.296 1.296 6 H -0.260 1.260 7 C -0.484 4.484 8 H 0.078 0.922 9 C -0.003 4.003 10 C 0.150 3.850 11 N -0.709 5.709 12 C 0.252 3.748 13 C -0.206 4.206 14 C -0.071 4.071 15 C -0.191 4.191 16 C -0.103 4.103 17 C 0.004 3.996 18 N -0.502 5.502 19 C 0.072 3.928 20 C -0.122 4.122 21 C -0.119 4.119 22 C -0.118 4.118 23 C -0.153 4.153 24 C 0.065 3.935 25 C -0.182 4.182 26 C -0.200 4.200 27 H 0.266 0.734 28 H 0.053 0.947 29 H 0.043 0.957 30 H 0.413 0.587 31 H 0.118 0.882 32 H 0.114 0.886 33 H 0.109 0.891 34 H 0.116 0.884 35 H 0.034 0.966 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.062 0.938 42 H 0.055 0.945 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.075 0.925 46 H 0.069 0.931 47 H 0.083 0.917 48 H 0.074 0.926 49 H 0.087 0.913 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.007 -4.205 -14.660 18.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.125 4.125 3 Si 0.712 3.288 4 H -0.206 1.206 5 H -0.224 1.224 6 H -0.184 1.184 7 C -0.521 4.521 8 H 0.096 0.904 9 C -0.005 4.005 10 C 0.026 3.974 11 N -0.335 5.335 12 C 0.143 3.857 13 C -0.230 4.230 14 C -0.090 4.090 15 C -0.213 4.213 16 C -0.124 4.124 17 C -0.095 4.095 18 N -0.224 5.224 19 C -0.054 4.054 20 C -0.160 4.160 21 C -0.157 4.157 22 C -0.155 4.155 23 C -0.192 4.192 24 C -0.061 4.061 25 C -0.220 4.220 26 C -0.239 4.239 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.251 0.749 31 H 0.136 0.864 32 H 0.132 0.868 33 H 0.127 0.873 34 H 0.133 0.867 35 H 0.052 0.948 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.093 0.907 46 H 0.088 0.912 47 H 0.101 0.899 48 H 0.093 0.907 49 H 0.105 0.895 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 10.643 -4.195 -13.979 18.064 hybrid contribution 0.476 0.935 -0.778 1.306 sum 11.119 -3.261 -14.757 18.763 Atomic orbital electron populations 1.69923 1.06389 1.27249 1.48752 1.24982 0.94581 0.99083 0.93902 0.86937 0.80865 0.83656 0.77364 1.20578 1.22384 1.18426 1.20312 0.88155 0.95036 1.48589 0.90418 1.19509 0.94310 0.93664 0.92995 1.21366 0.97899 0.95343 0.82747 1.44905 1.65112 1.18895 1.04541 1.17829 0.90573 0.90805 0.86540 1.20627 1.08769 0.93820 0.99736 1.20813 0.96964 0.98825 0.92375 1.20602 1.07827 0.95070 0.97754 1.21457 0.98276 0.95257 0.97375 1.18058 1.08845 0.90016 0.92594 1.59152 1.07382 1.03478 1.52359 1.21784 0.91751 0.92078 0.99789 1.21460 1.02916 0.96259 0.95375 1.20599 0.98200 1.00697 0.96185 1.20560 0.98490 0.95899 1.00551 1.22129 1.02353 0.96441 0.98239 1.21913 0.92188 1.02723 0.89302 1.22717 1.02808 0.93516 1.02913 1.23164 1.00624 1.04348 0.95746 0.92438 0.92977 0.93853 0.74933 0.86420 0.86801 0.87256 0.86656 0.94755 0.91263 0.90359 0.91208 0.92317 0.92526 0.91883 0.92625 0.91478 0.91173 0.90672 0.91195 0.89876 0.90738 0.89472 0.91369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.52 13.96 55.43 0.77 -25.75 16 2 C 0.08 2.19 5.42 -17.82 -0.10 2.09 16 3 Si 0.88 21.54 24.35 -169.99 -4.14 17.40 16 4 H -0.28 -6.72 6.82 56.52 0.39 -6.34 16 5 H -0.30 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.26 -6.01 6.70 56.52 0.38 -5.63 16 7 C -0.48 -13.21 9.55 -34.44 -0.33 -13.54 16 8 H 0.08 2.31 8.06 -52.49 -0.42 1.89 16 9 C 0.00 -0.08 1.24 -155.62 -0.19 -0.27 16 10 C 0.15 3.22 3.67 -4.04 -0.01 3.21 16 11 N -0.71 -13.96 5.56 -58.45 -0.33 -14.29 16 12 C 0.25 4.56 6.67 -83.50 -0.56 4.01 16 13 C -0.21 -3.59 9.30 -39.42 -0.37 -3.96 16 14 C -0.07 -1.05 10.04 -39.57 -0.40 -1.45 16 15 C -0.19 -2.64 10.04 -39.56 -0.40 -3.03 16 16 C -0.10 -1.45 8.36 -39.41 -0.33 -1.78 16 17 C 0.00 0.06 4.50 -83.50 -0.38 -0.32 16 18 N -0.50 -7.10 3.85 -172.10 -0.66 -7.76 16 19 C 0.07 0.87 4.89 -4.49 -0.02 0.85 16 20 C -0.12 -1.24 5.63 -27.32 -0.15 -1.39 16 21 C -0.12 -1.06 5.30 -29.41 -0.16 -1.21 16 22 C -0.12 -1.07 5.30 -29.42 -0.16 -1.23 16 23 C -0.15 -1.60 5.34 -27.32 -0.15 -1.75 16 24 C 0.07 0.84 5.03 -4.49 -0.02 0.82 16 25 C -0.18 -3.63 9.47 -26.73 -0.25 -3.88 16 26 C -0.20 -4.13 9.89 -26.69 -0.26 -4.40 16 27 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 28 H 0.05 1.23 2.60 -51.93 -0.13 1.10 16 29 H 0.04 0.87 7.65 -51.93 -0.40 0.48 16 30 H 0.41 8.24 7.50 -40.82 -0.31 7.93 16 31 H 0.12 2.11 6.77 -52.48 -0.36 1.76 16 32 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 33 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 34 H 0.12 1.42 4.93 -52.49 -0.26 1.16 16 35 H 0.03 0.41 5.50 -51.93 -0.29 0.12 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.08 0.87 7.08 -51.93 -0.37 0.50 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.50 7.52 -51.93 -0.39 0.11 16 41 H 0.06 0.59 7.52 -51.93 -0.39 0.20 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.07 0.76 4.08 -51.93 -0.21 0.55 16 45 H 0.07 0.96 6.59 -51.93 -0.34 0.61 16 46 H 0.07 1.02 7.84 -51.93 -0.41 0.62 16 47 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 48 H 0.07 1.36 8.14 -51.92 -0.42 0.94 16 49 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 50 H 0.07 1.29 8.03 -51.93 -0.42 0.87 16 LS Contribution 369.20 15.07 5.56 5.56 Total: -1.00 -28.38 369.20 -11.11 -39.49 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: -8.09 Total: 12.59 kcal Atomic # 6 Polarization: -23.01 SS G_CDS: -4.23 Total: -27.24 kcal Atomic # 7 Polarization: -47.58 SS G_CDS: -0.21 Total: -47.80 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.14 Total: 17.40 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.38 -11.11 -39.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594702187.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.269 kcal (2) G-P(sol) polarization free energy of solvation -28.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds