Wall clock time and date at job start Tue Mar 31 2020 11:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47373 * 2 1 4 4 C 1.52999 * 109.46846 * 299.42667 * 3 2 1 5 5 C 1.53004 * 109.46675 * 294.49316 * 4 3 2 6 6 C 1.53007 * 109.46742 * 59.42123 * 3 2 1 7 7 N 1.46891 * 109.47067 * 65.00312 * 6 3 2 8 8 C 1.46900 * 111.00222 * 66.04434 * 7 6 3 9 9 C 1.50698 * 109.47279 * 199.74719 * 8 7 6 10 10 H 1.08002 * 120.00303 * 5.02723 * 9 8 7 11 11 C 1.37881 * 120.00139 * 185.02229 * 9 8 7 12 12 N 1.31516 * 119.99708 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00258 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.46900 * 60.00340 * 13 11 9 15 15 H 1.48501 * 109.47232 * 180.02562 * 13 11 9 16 16 H 1.48507 * 109.47141 * 300.00605 * 13 11 9 17 17 C 1.46907 * 111.00108 * 189.99755 * 7 6 3 18 18 C 1.52995 * 109.46943 * 76.47676 * 17 7 6 19 19 C 1.50702 * 109.47200 * 174.65532 * 18 17 7 20 20 C 1.38361 * 119.85100 * 89.99864 * 19 18 17 21 21 C 1.37943 * 120.15337 * 180.02562 * 20 19 18 22 22 C 1.39631 * 119.84617 * 359.97438 * 21 20 19 23 23 C 1.43202 * 120.15385 * 180.02562 * 22 21 20 24 24 N 9.58895 * 103.66189 * 227.13520 * 6 1 2 25 25 C 1.39639 * 119.69927 * 0.28018 * 22 21 20 26 26 C 1.37950 * 119.84159 * 359.42198 * 25 22 21 27 27 H 1.09003 * 109.47542 * 302.41388 * 1 2 3 28 28 H 1.09000 * 109.47541 * 62.41633 * 1 2 3 29 29 H 1.09001 * 109.47547 * 182.41617 * 1 2 3 30 30 H 1.08999 * 109.47309 * 239.99750 * 2 1 3 31 31 H 1.09002 * 109.47197 * 119.99841 * 2 1 3 32 32 H 1.08993 * 109.47120 * 179.42198 * 3 2 1 33 33 H 1.08997 * 109.47648 * 54.49811 * 4 3 2 34 34 H 1.09002 * 109.46870 * 174.50326 * 4 3 2 35 35 H 1.09003 * 109.46854 * 185.88345 * 5 4 3 36 36 H 1.08994 * 109.47687 * 305.88635 * 5 4 3 37 37 H 1.08998 * 109.46767 * 65.89097 * 5 4 3 38 38 H 1.08997 * 109.47173 * 304.99727 * 6 3 2 39 39 H 1.09003 * 109.46442 * 185.00175 * 6 3 2 40 40 H 1.08997 * 109.47117 * 319.74640 * 8 7 6 41 41 H 1.08999 * 109.47409 * 79.74747 * 8 7 6 42 42 H 0.97000 * 119.99873 * 179.97438 * 12 11 9 43 43 H 1.09003 * 109.46540 * 316.47982 * 17 7 6 44 44 H 1.08998 * 109.46954 * 196.47824 * 17 7 6 45 45 H 1.09001 * 109.47654 * 54.65190 * 18 17 7 46 46 H 1.09000 * 109.47436 * 294.65329 * 18 17 7 47 47 H 1.08000 * 119.92088 * 0.02562 * 20 19 18 48 48 H 1.07997 * 120.07999 * 179.97438 * 21 20 19 49 49 H 1.07994 * 120.07723 * 179.69972 * 25 22 21 50 50 H 1.08005 * 119.92091 * 180.28137 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5418 2.1595 -1.2564 5 6 2.1735 1.5183 -2.4937 6 6 1.5181 2.1679 1.2420 7 7 2.0924 1.5527 2.4459 8 6 3.5451 1.7632 2.5028 9 6 4.1630 0.7527 3.4346 10 1 3.5522 -0.0237 3.8711 11 6 5.5082 0.8192 3.7297 12 7 6.2520 1.7649 3.1985 13 14 6.2743 -0.4338 4.8841 14 1 6.0973 -1.7971 4.3227 15 1 7.7230 -0.1452 5.0370 16 1 5.6115 -0.3548 6.2107 17 6 1.4389 2.0606 3.6596 18 6 0.0677 1.4001 3.8149 19 6 -0.5468 1.8203 5.1253 20 6 -1.3414 2.9515 5.1819 21 6 -1.9065 3.3422 6.3781 22 6 -1.6755 2.5927 7.5334 23 6 -2.2593 2.9919 8.7785 24 7 -2.7228 3.3084 9.7662 25 6 -0.8682 1.4551 7.4701 26 6 -0.3144 1.0725 6.2660 27 1 -0.3634 0.5509 0.8676 28 1 -0.3634 0.4758 -0.9108 29 1 -0.3634 -1.0267 0.0433 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.1299 1.4425 0.0104 33 1 0.4568 2.0749 -1.3171 34 1 1.8222 3.2118 -1.2094 35 1 1.9020 2.0930 -3.3793 36 1 3.2579 1.5093 -2.3848 37 1 1.8102 0.4960 -2.5986 38 1 0.4314 2.0912 1.2778 39 1 1.8069 3.2180 1.1975 40 1 3.9688 1.6445 1.5056 41 1 3.7525 2.7689 2.8684 42 1 7.1982 1.8119 3.4064 43 1 1.3151 3.1407 3.5806 44 1 2.0548 1.8280 4.5283 45 1 0.1824 0.3162 3.7984 46 1 -0.5797 1.7093 2.9944 47 1 -1.5196 3.5300 4.2875 48 1 -2.5263 4.2256 6.4211 49 1 -0.6815 0.8737 8.3608 50 1 0.3065 0.1903 6.2147 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595346880.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:48 Heat of formation + Delta-G solvation = 29.223833 kcal Electronic energy + Delta-G solvation = -25955.960390 eV Core-core repulsion = 22561.171145 eV Total energy + Delta-G solvation = -3394.789244 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.67731 -38.20552 -36.67622 -35.49625 -33.24261 -32.26992 -31.17886 -30.87663 -29.06081 -28.05549 -26.14358 -23.92589 -23.60768 -22.85898 -22.72046 -21.49329 -20.02284 -19.00670 -18.31100 -16.53827 -15.79801 -15.66532 -15.30972 -14.87361 -14.71818 -14.57380 -14.40808 -14.12033 -13.96255 -13.62014 -13.32866 -13.07515 -12.96687 -12.70237 -12.67229 -12.41937 -12.32149 -12.16037 -11.89484 -11.61834 -11.54727 -11.31358 -11.23299 -11.06205 -10.99993 -10.79317 -10.74939 -10.59279 -10.28881 -10.08518 -9.93134 -9.76316 -9.53841 -9.22038 -9.12263 -8.73993 -8.39572 -7.24481 -6.02052 -4.03117 0.68307 1.25481 2.53033 2.84570 3.32209 3.37337 3.39185 3.75881 3.78892 4.41027 4.66160 4.72322 4.76049 5.03723 5.21297 5.26473 5.28384 5.30675 5.34402 5.41985 5.51887 5.56349 5.64274 5.67523 5.75443 5.79430 5.88596 5.99924 6.01131 6.05494 6.07500 6.12294 6.15369 6.19031 6.20891 6.25059 6.31499 6.36682 6.41480 6.60168 6.63708 6.69425 6.71966 6.77549 6.88003 7.02621 7.26380 7.34521 7.37620 7.83383 8.14261 8.18987 8.55303 9.05239 9.61170 11.08158 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.008523 B = 0.003983 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3284.271487 B = 7027.672917 C = 9575.398383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C -0.085 4.085 4 C -0.121 4.121 5 C -0.150 4.150 6 C 0.059 3.941 7 N -0.531 5.531 8 C 0.191 3.809 9 C -0.502 4.502 10 H 0.062 0.938 11 C 0.056 3.944 12 N -0.900 5.900 13 Si 0.893 3.107 14 H -0.277 1.277 15 H -0.289 1.289 16 H -0.278 1.278 17 C 0.070 3.930 18 C -0.083 4.083 19 C -0.034 4.034 20 C -0.122 4.122 21 C -0.069 4.069 22 C -0.048 4.048 23 C 0.262 3.738 24 N -0.431 5.431 25 C -0.066 4.066 26 C -0.114 4.114 27 H 0.057 0.943 28 H 0.045 0.955 29 H 0.043 0.957 30 H 0.048 0.952 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.045 0.955 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.063 0.937 39 H 0.017 0.983 40 H 0.032 0.968 41 H -0.007 1.007 42 H 0.261 0.739 43 H 0.020 0.980 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.067 0.933 47 H 0.131 0.869 48 H 0.128 0.872 49 H 0.130 0.870 50 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.371 0.100 -3.539 14.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.146 4.146 3 C -0.104 4.104 4 C -0.159 4.159 5 C -0.207 4.207 6 C -0.070 4.070 7 N -0.255 5.255 8 C 0.066 3.934 9 C -0.541 4.541 10 H 0.081 0.919 11 C -0.145 4.145 12 N -0.539 5.539 13 Si 0.722 3.278 14 H -0.202 1.202 15 H -0.215 1.215 16 H -0.203 1.203 17 C -0.058 4.058 18 C -0.121 4.121 19 C -0.036 4.036 20 C -0.140 4.140 21 C -0.089 4.089 22 C -0.052 4.052 23 C -0.053 4.053 24 N -0.107 5.107 25 C -0.087 4.087 26 C -0.132 4.132 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.035 0.965 40 H 0.050 0.950 41 H 0.011 0.989 42 H 0.070 0.930 43 H 0.039 0.961 44 H 0.102 0.898 45 H 0.104 0.896 46 H 0.086 0.914 47 H 0.149 0.851 48 H 0.146 0.854 49 H 0.148 0.852 50 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -14.970 0.158 -2.033 15.108 hybrid contribution 0.957 0.239 0.317 1.036 sum -14.012 0.398 -1.716 14.122 Atomic orbital electron populations 1.21849 0.97138 1.00571 1.01086 1.21375 0.94822 0.96373 1.02006 1.21232 1.01289 0.95149 0.92737 1.21600 1.00181 0.99236 0.94848 1.21776 1.01118 1.00595 0.97235 1.22158 0.98508 0.94966 0.91337 1.62047 1.07155 1.56868 0.99466 1.19783 0.80533 0.95517 0.97553 1.21121 0.93200 1.12919 1.26885 0.91941 1.24974 0.97337 0.95789 0.96444 1.69943 1.06571 1.32964 1.44445 0.86637 0.78038 0.81862 0.81310 1.20219 1.21500 1.20331 1.21900 0.93215 0.95090 0.95620 1.20797 0.96793 1.02423 0.92069 1.20357 0.93627 0.93384 0.96213 1.21018 0.98204 0.97043 0.97701 1.21104 0.98248 0.98367 0.91198 1.15970 1.02939 0.98961 0.87320 1.25816 0.93216 0.93360 0.92934 1.81232 1.09789 1.08593 1.11073 1.21172 0.94527 0.94359 0.98630 1.21133 0.99827 1.00845 0.91430 0.92382 0.93637 0.93822 0.93353 0.90167 0.90301 0.92171 0.92721 0.93572 0.92693 0.92706 0.91918 0.96501 0.95034 0.98948 0.92961 0.96139 0.89753 0.89634 0.91401 0.85126 0.85360 0.85195 0.84472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.22 37.15 0.34 -1.45 16 2 C -0.11 -1.56 5.37 -26.73 -0.14 -1.71 16 3 C -0.09 -1.30 2.10 -90.62 -0.19 -1.49 16 4 C -0.12 -1.52 5.20 -26.73 -0.14 -1.66 16 5 C -0.15 -1.76 9.53 37.16 0.35 -1.40 16 6 C 0.06 0.93 3.94 -3.82 -0.02 0.92 16 7 N -0.53 -9.90 3.81 -236.07 -0.90 -10.80 16 8 C 0.19 4.56 4.59 -4.98 -0.02 4.54 16 9 C -0.50 -13.17 8.51 -34.44 -0.29 -13.46 16 10 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 11 C 0.06 1.51 5.46 -17.82 -0.10 1.41 16 12 N -0.90 -25.85 13.29 55.43 0.74 -25.12 16 13 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 14 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 15 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 C 0.07 1.16 4.79 -3.82 -0.02 1.15 16 18 C -0.08 -1.04 5.38 -27.88 -0.15 -1.19 16 19 C -0.03 -0.39 5.14 -104.53 -0.54 -0.92 16 20 C -0.12 -1.20 9.68 -39.64 -0.38 -1.58 16 21 C -0.07 -0.64 9.76 -39.17 -0.38 -1.03 16 22 C -0.05 -0.50 5.73 -106.93 -0.61 -1.12 16 23 C 0.26 3.09 15.33 -22.47 -0.34 2.75 16 24 N -0.43 -6.00 18.54 41.84 0.78 -5.22 16 25 C -0.07 -0.67 9.76 -39.16 -0.38 -1.05 16 26 C -0.11 -1.24 9.68 -39.64 -0.38 -1.62 16 27 H 0.06 0.70 6.18 -51.93 -0.32 0.38 16 28 H 0.04 0.50 6.45 -51.93 -0.34 0.16 16 29 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.66 6.69 -51.93 -0.35 0.32 16 31 H 0.08 1.37 7.77 -51.93 -0.40 0.97 16 32 H 0.08 1.45 6.08 -51.93 -0.32 1.14 16 33 H 0.06 0.69 6.22 -51.93 -0.32 0.37 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.05 0.62 6.86 -51.93 -0.36 0.26 16 38 H 0.06 0.87 4.73 -51.93 -0.25 0.62 16 39 H 0.02 0.29 8.12 -51.93 -0.42 -0.14 16 40 H 0.03 0.81 5.81 -51.93 -0.30 0.51 16 41 H -0.01 -0.20 8.00 -51.93 -0.42 -0.61 16 42 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.02 0.34 7.99 -51.93 -0.41 -0.08 16 44 H 0.08 1.61 7.29 -51.93 -0.38 1.23 16 45 H 0.09 1.12 8.08 -51.93 -0.42 0.70 16 46 H 0.07 0.77 6.94 -51.93 -0.36 0.41 16 47 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 48 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 49 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 50 H 0.14 1.42 8.06 -52.48 -0.42 1.00 16 LS Contribution 399.81 15.07 6.03 6.03 Total: -1.00 -28.64 399.81 -10.07 -38.71 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -8.29 Total: -0.56 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: -3.40 Total: -18.93 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: 0.61 Total: -41.14 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -28.64 -10.07 -38.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595346880.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.938 kcal (2) G-P(sol) polarization free energy of solvation -28.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds