Wall clock time and date at job start Tue Mar 31 2020 11:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47373 * 2 1 4 4 C 1.52999 * 109.46846 * 299.42667 * 3 2 1 5 5 C 1.53004 * 109.46675 * 294.49316 * 4 3 2 6 6 C 1.53007 * 109.46742 * 59.42123 * 3 2 1 7 7 N 1.46891 * 109.47067 * 65.00312 * 6 3 2 8 8 C 1.46900 * 111.00222 * 66.04434 * 7 6 3 9 9 C 1.50698 * 109.47279 * 199.74719 * 8 7 6 10 10 H 1.08002 * 120.00303 * 5.02723 * 9 8 7 11 11 C 1.37881 * 120.00139 * 185.02229 * 9 8 7 12 12 N 1.31516 * 119.99708 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00258 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.46900 * 60.00340 * 13 11 9 15 15 H 1.48501 * 109.47232 * 180.02562 * 13 11 9 16 16 H 1.48507 * 109.47141 * 300.00605 * 13 11 9 17 17 C 1.46907 * 111.00108 * 189.99755 * 7 6 3 18 18 C 1.52995 * 109.46943 * 76.47676 * 17 7 6 19 19 C 1.50702 * 109.47200 * 174.65532 * 18 17 7 20 20 C 1.38361 * 119.85100 * 89.99864 * 19 18 17 21 21 C 1.37943 * 120.15337 * 180.02562 * 20 19 18 22 22 C 1.39631 * 119.84617 * 359.97438 * 21 20 19 23 23 C 1.43202 * 120.15385 * 180.02562 * 22 21 20 24 24 N 9.58895 * 103.66189 * 227.13520 * 6 1 2 25 25 C 1.39639 * 119.69927 * 0.28018 * 22 21 20 26 26 C 1.37950 * 119.84159 * 359.42198 * 25 22 21 27 27 H 1.09003 * 109.47542 * 302.41388 * 1 2 3 28 28 H 1.09000 * 109.47541 * 62.41633 * 1 2 3 29 29 H 1.09001 * 109.47547 * 182.41617 * 1 2 3 30 30 H 1.08999 * 109.47309 * 239.99750 * 2 1 3 31 31 H 1.09002 * 109.47197 * 119.99841 * 2 1 3 32 32 H 1.08993 * 109.47120 * 179.42198 * 3 2 1 33 33 H 1.08997 * 109.47648 * 54.49811 * 4 3 2 34 34 H 1.09002 * 109.46870 * 174.50326 * 4 3 2 35 35 H 1.09003 * 109.46854 * 185.88345 * 5 4 3 36 36 H 1.08994 * 109.47687 * 305.88635 * 5 4 3 37 37 H 1.08998 * 109.46767 * 65.89097 * 5 4 3 38 38 H 1.08997 * 109.47173 * 304.99727 * 6 3 2 39 39 H 1.09003 * 109.46442 * 185.00175 * 6 3 2 40 40 H 1.08997 * 109.47117 * 319.74640 * 8 7 6 41 41 H 1.08999 * 109.47409 * 79.74747 * 8 7 6 42 42 H 0.97000 * 119.99873 * 179.97438 * 12 11 9 43 43 H 1.09003 * 109.46540 * 316.47982 * 17 7 6 44 44 H 1.08998 * 109.46954 * 196.47824 * 17 7 6 45 45 H 1.09001 * 109.47654 * 54.65190 * 18 17 7 46 46 H 1.09000 * 109.47436 * 294.65329 * 18 17 7 47 47 H 1.08000 * 119.92088 * 0.02562 * 20 19 18 48 48 H 1.07997 * 120.07999 * 179.97438 * 21 20 19 49 49 H 1.07994 * 120.07723 * 179.69972 * 25 22 21 50 50 H 1.08005 * 119.92091 * 180.28137 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5418 2.1595 -1.2564 5 6 2.1735 1.5183 -2.4937 6 6 1.5181 2.1679 1.2420 7 7 2.0924 1.5527 2.4459 8 6 3.5451 1.7632 2.5028 9 6 4.1630 0.7527 3.4346 10 1 3.5522 -0.0237 3.8711 11 6 5.5082 0.8192 3.7297 12 7 6.2520 1.7649 3.1985 13 14 6.2743 -0.4338 4.8841 14 1 6.0973 -1.7971 4.3227 15 1 7.7230 -0.1452 5.0370 16 1 5.6115 -0.3548 6.2107 17 6 1.4389 2.0606 3.6596 18 6 0.0677 1.4001 3.8149 19 6 -0.5468 1.8203 5.1253 20 6 -1.3414 2.9515 5.1819 21 6 -1.9065 3.3422 6.3781 22 6 -1.6755 2.5927 7.5334 23 6 -2.2593 2.9919 8.7785 24 7 -2.7228 3.3084 9.7662 25 6 -0.8682 1.4551 7.4701 26 6 -0.3144 1.0725 6.2660 27 1 -0.3634 0.5509 0.8676 28 1 -0.3634 0.4758 -0.9108 29 1 -0.3634 -1.0267 0.0433 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.1299 1.4425 0.0104 33 1 0.4568 2.0749 -1.3171 34 1 1.8222 3.2118 -1.2094 35 1 1.9020 2.0930 -3.3793 36 1 3.2579 1.5093 -2.3848 37 1 1.8102 0.4960 -2.5986 38 1 0.4314 2.0912 1.2778 39 1 1.8069 3.2180 1.1975 40 1 3.9688 1.6445 1.5056 41 1 3.7525 2.7689 2.8684 42 1 7.1982 1.8119 3.4064 43 1 1.3151 3.1407 3.5806 44 1 2.0548 1.8280 4.5283 45 1 0.1824 0.3162 3.7984 46 1 -0.5797 1.7093 2.9944 47 1 -1.5196 3.5300 4.2875 48 1 -2.5263 4.2256 6.4211 49 1 -0.6815 0.8737 8.3608 50 1 0.3065 0.1903 6.2147 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595346880.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:47 Heat of formation + Delta-G solvation = 16.699667 kcal Electronic energy + Delta-G solvation = -25956.503479 eV Core-core repulsion = 22561.171145 eV Total energy + Delta-G solvation = -3395.332333 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.54813 -39.51251 -37.67011 -36.79103 -34.83843 -33.76340 -31.96076 -31.90973 -30.20732 -29.66487 -27.57126 -25.11624 -25.02943 -24.00637 -23.63726 -22.69289 -21.38195 -19.84263 -19.57534 -18.50929 -16.98082 -16.65456 -16.43957 -16.36251 -16.11383 -15.77589 -15.46878 -15.24386 -15.06054 -14.68369 -14.38201 -14.19595 -14.05083 -13.95993 -13.77029 -13.69564 -13.46840 -13.40347 -13.32573 -12.97992 -12.70960 -12.63211 -12.49881 -12.34207 -12.19559 -12.10832 -12.04161 -11.87971 -11.82375 -11.50660 -11.16234 -11.11710 -10.94262 -10.91349 -10.49088 -9.89579 -9.63444 -8.85370 -8.12181 -6.20807 -0.17169 0.48211 1.43813 1.45710 1.53104 1.59779 1.93917 2.44542 2.87452 2.93216 3.20120 3.35946 3.93539 4.02126 4.03768 4.05335 4.13710 4.29081 4.31046 4.47709 4.50042 4.54816 4.60708 4.63509 4.73873 4.80215 4.82943 4.84909 4.93240 4.95201 5.01547 5.07313 5.11645 5.16432 5.20114 5.26613 5.28746 5.35547 5.38703 5.39741 5.42856 5.47917 5.49760 5.58030 5.69882 5.75083 5.77819 5.86342 5.95233 6.20215 6.42864 6.50644 6.78522 6.97003 7.48571 8.97467 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.008523 B = 0.003983 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3284.271487 B = 7027.672917 C = 9575.398383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.104 4.104 3 C -0.084 4.084 4 C -0.114 4.114 5 C -0.149 4.149 6 C 0.061 3.939 7 N -0.530 5.530 8 C 0.209 3.791 9 C -0.509 4.509 10 H 0.064 0.936 11 C 0.002 3.998 12 N -0.938 5.938 13 Si 0.958 3.042 14 H -0.269 1.269 15 H -0.289 1.289 16 H -0.267 1.267 17 C 0.072 3.928 18 C -0.067 4.067 19 C -0.046 4.046 20 C -0.119 4.119 21 C -0.062 4.062 22 C -0.054 4.054 23 C 0.283 3.717 24 N -0.471 5.471 25 C -0.065 4.065 26 C -0.124 4.124 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.047 0.953 32 H 0.035 0.965 33 H 0.083 0.917 34 H 0.050 0.950 35 H 0.065 0.935 36 H 0.036 0.964 37 H 0.061 0.939 38 H 0.096 0.904 39 H 0.005 0.995 40 H 0.008 0.992 41 H -0.045 1.045 42 H 0.261 0.739 43 H 0.021 0.979 44 H 0.053 0.947 45 H 0.080 0.920 46 H 0.088 0.912 47 H 0.151 0.849 48 H 0.151 0.849 49 H 0.143 0.857 50 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.814 -0.413 -4.006 17.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.141 4.141 3 C -0.103 4.103 4 C -0.152 4.152 5 C -0.206 4.206 6 C -0.067 4.067 7 N -0.254 5.254 8 C 0.083 3.917 9 C -0.547 4.547 10 H 0.082 0.918 11 C -0.195 4.195 12 N -0.579 5.579 13 Si 0.784 3.216 14 H -0.194 1.194 15 H -0.215 1.215 16 H -0.192 1.192 17 C -0.056 4.056 18 C -0.104 4.104 19 C -0.047 4.047 20 C -0.137 4.137 21 C -0.082 4.082 22 C -0.058 4.058 23 C -0.031 4.031 24 N -0.147 5.147 25 C -0.086 4.086 26 C -0.142 4.142 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.102 0.898 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.055 0.945 37 H 0.080 0.920 38 H 0.114 0.886 39 H 0.023 0.977 40 H 0.026 0.974 41 H -0.027 1.027 42 H 0.069 0.931 43 H 0.040 0.960 44 H 0.072 0.928 45 H 0.098 0.902 46 H 0.106 0.894 47 H 0.169 0.831 48 H 0.169 0.831 49 H 0.161 0.839 50 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -17.441 -0.363 -2.499 17.623 hybrid contribution 1.711 0.426 0.425 1.814 sum -15.730 0.063 -2.074 15.866 Atomic orbital electron populations 1.21788 0.94514 1.01558 1.02039 1.21292 0.97015 0.95158 1.00674 1.21178 0.98694 0.96385 0.94024 1.21556 1.01475 0.98614 0.93565 1.21765 0.99931 1.01319 0.97567 1.22265 1.00081 0.94069 0.90290 1.62006 1.04294 1.57532 1.01556 1.19382 0.84054 0.92868 0.95435 1.21452 0.93508 1.13042 1.26747 0.91807 1.25822 0.97988 0.97653 0.98086 1.70084 1.06757 1.34924 1.46120 0.85598 0.76937 0.79534 0.79547 1.19369 1.21508 1.19217 1.21893 0.94841 0.95556 0.93324 1.20580 0.94384 1.01634 0.93818 1.20303 0.94520 0.94380 0.95505 1.21221 0.97386 0.96427 0.98650 1.21348 0.97765 0.98644 0.90463 1.16065 1.03228 0.99377 0.87084 1.25944 0.92230 0.92268 0.92675 1.81257 1.11238 1.09967 1.12209 1.21299 0.94044 0.94355 0.98883 1.21209 1.00130 1.01126 0.91748 0.92209 0.91803 0.92863 0.92868 0.93413 0.94671 0.89822 0.93079 0.91587 0.94499 0.92012 0.88626 0.97686 0.97404 1.02713 0.93066 0.96046 0.92846 0.90179 0.89363 0.83104 0.83116 0.83870 0.84530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 9.22 71.98 0.66 -2.33 16 2 C -0.10 -2.93 5.37 30.59 0.16 -2.76 16 3 C -0.08 -2.58 2.10 -10.79 -0.02 -2.60 16 4 C -0.11 -2.72 5.20 30.60 0.16 -2.56 16 5 C -0.15 -3.28 9.53 71.98 0.69 -2.59 16 6 C 0.06 1.91 3.94 86.31 0.34 2.25 16 7 N -0.53 -20.26 3.81 -900.80 -3.43 -23.70 16 8 C 0.21 10.56 4.59 85.56 0.39 10.96 16 9 C -0.51 -27.65 8.51 25.60 0.22 -27.43 16 10 H 0.06 3.37 7.81 -2.91 -0.02 3.35 16 11 C 0.00 0.11 5.46 84.66 0.46 0.57 16 12 N -0.94 -55.96 13.29 21.45 0.28 -55.68 16 13 Si 0.96 43.56 29.54 68.60 2.03 45.58 16 14 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 15 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 16 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 17 C 0.07 2.40 4.79 86.30 0.41 2.81 16 18 C -0.07 -1.56 5.38 29.85 0.16 -1.40 16 19 C -0.05 -0.94 5.14 -19.81 -0.10 -1.04 16 20 C -0.12 -2.00 9.68 22.23 0.22 -1.78 16 21 C -0.06 -0.99 9.76 22.54 0.22 -0.77 16 22 C -0.05 -1.01 5.73 -21.36 -0.12 -1.13 16 23 C 0.28 6.27 15.33 88.33 1.35 7.63 16 24 N -0.47 -12.65 18.54 19.00 0.35 -12.30 16 25 C -0.07 -1.21 9.76 22.54 0.22 -0.99 16 26 C -0.12 -2.53 9.68 22.23 0.22 -2.32 16 27 H 0.06 1.23 6.18 -2.39 -0.01 1.22 16 28 H 0.06 1.13 6.45 -2.39 -0.02 1.12 16 29 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.05 1.42 6.69 -2.39 -0.02 1.41 16 31 H 0.05 1.65 7.77 -2.39 -0.02 1.63 16 32 H 0.03 1.38 6.08 -2.39 -0.01 1.37 16 33 H 0.08 1.62 6.22 -2.39 -0.01 1.61 16 34 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.06 1.27 6.86 -2.39 -0.02 1.25 16 38 H 0.10 2.39 4.73 -2.39 -0.01 2.38 16 39 H 0.00 0.17 8.12 -2.39 -0.02 0.15 16 40 H 0.01 0.44 5.81 -2.39 -0.01 0.43 16 41 H -0.04 -2.56 8.00 -2.39 -0.02 -2.58 16 42 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 43 H 0.02 0.70 7.99 -2.39 -0.02 0.68 16 44 H 0.05 2.10 7.29 -2.39 -0.02 2.08 16 45 H 0.08 1.99 8.08 -2.39 -0.02 1.97 16 46 H 0.09 1.71 6.94 -2.39 -0.02 1.70 16 47 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 48 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 49 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 50 H 0.14 2.75 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -65.08 399.81 5.78 -59.30 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 0.91 Total: 12.28 kcal Atomic # 6 Polarization: -31.13 SS G_CDS: 5.64 Total: -25.49 kcal Atomic # 7 Polarization: -88.87 SS G_CDS: -2.80 Total: -91.67 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Total: -65.08 5.78 -59.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595346880.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.004 kcal (2) G-P(sol) polarization free energy of solvation -65.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds