Wall clock time and date at job start Tue Mar 31 2020 10:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00010 * 2 1 4 4 C 1.52996 * 109.47182 * 180.02562 * 3 2 1 5 5 O 1.42896 * 109.47556 * 64.99477 * 4 3 2 6 6 C 1.42904 * 114.00351 * 180.02562 * 5 4 3 7 7 C 1.52997 * 109.47079 * 180.02562 * 6 5 4 8 8 C 1.53006 * 109.46860 * 180.02562 * 7 6 5 9 9 N 1.46501 * 109.46934 * 179.97438 * 8 7 6 10 10 C 1.34774 * 119.99554 * 179.97438 * 9 8 7 11 11 O 1.21579 * 120.00663 * 355.01845 * 10 9 8 12 12 N 1.34777 * 119.99807 * 175.01679 * 10 9 8 13 13 C 1.46928 * 120.62990 * 5.22879 * 12 10 9 14 14 C 1.53199 * 108.77480 * 126.36688 * 13 12 10 15 15 C 1.53038 * 109.30912 * 54.63978 * 14 13 12 16 16 C 1.53041 * 109.53781 * 298.62992 * 15 14 13 17 17 H 1.09005 * 109.50089 * 301.41898 * 16 15 14 18 18 C 1.50704 * 109.50070 * 181.35339 * 16 15 14 19 19 H 1.08002 * 119.99176 * 0.02562 * 18 16 15 20 20 C 1.37876 * 120.00247 * 180.02562 * 18 16 15 21 21 N 1.31515 * 119.99952 * 359.97438 * 20 18 16 22 22 Si 1.86798 * 119.99941 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46740 * 90.00339 * 22 20 18 24 24 H 1.48502 * 109.46918 * 209.99832 * 22 20 18 25 25 H 1.48497 * 109.47013 * 330.00342 * 22 20 18 26 26 C 1.46929 * 120.63330 * 184.94825 * 12 10 9 27 27 H 1.09004 * 109.47065 * 60.00284 * 1 2 3 28 28 H 1.09000 * 109.46998 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47214 * 300.00417 * 1 2 3 30 30 H 1.08995 * 109.47240 * 59.99584 * 3 2 1 31 31 H 1.09006 * 109.46620 * 299.99631 * 3 2 1 32 32 H 1.09003 * 109.46809 * 304.99506 * 4 3 2 33 33 H 1.09001 * 109.47289 * 184.99707 * 4 3 2 34 34 H 1.08999 * 109.47018 * 59.99879 * 6 5 4 35 35 H 1.09003 * 109.46517 * 300.00192 * 6 5 4 36 36 H 1.08999 * 109.47718 * 59.99788 * 7 6 5 37 37 H 1.09003 * 109.46726 * 299.99550 * 7 6 5 38 38 H 1.08999 * 109.47220 * 59.99370 * 8 7 6 39 39 H 1.09003 * 109.46991 * 299.99275 * 8 7 6 40 40 H 0.96993 * 120.00219 * 359.97438 * 9 8 7 41 41 H 1.08999 * 109.59113 * 246.15587 * 13 12 10 42 42 H 1.08998 * 109.58822 * 6.58007 * 13 12 10 43 43 H 1.08998 * 109.49155 * 174.58631 * 14 13 12 44 44 H 1.08997 * 109.49765 * 294.68518 * 14 13 12 45 45 H 1.08999 * 109.46342 * 58.65529 * 15 14 13 46 46 H 1.09003 * 109.45501 * 178.61315 * 15 14 13 47 47 H 0.96993 * 119.99900 * 180.02562 * 21 20 18 48 48 H 1.08997 * 109.58219 * 353.42016 * 26 12 10 49 49 H 1.09000 * 109.58348 * 113.84624 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 8 3.9649 0.5796 -1.2219 6 6 5.3812 0.4191 -1.3245 7 6 5.7246 -0.2341 -2.6647 8 6 7.2410 -0.4065 -2.7742 9 7 7.5698 -1.0325 -4.0573 10 6 8.8554 -1.2831 -4.3748 11 8 9.7477 -0.9087 -3.6387 12 7 9.1520 -1.9489 -5.5085 13 6 8.0953 -2.3076 -6.4643 14 6 8.4843 -1.7820 -7.8497 15 6 9.8722 -2.3100 -8.2198 16 6 10.8999 -1.8037 -7.2051 17 1 10.8948 -0.7137 -7.1950 18 6 12.2712 -2.2967 -7.5891 19 1 12.3976 -2.9097 -8.4693 20 6 13.3643 -1.9653 -6.8169 21 7 13.2103 -1.2185 -5.7454 22 14 15.0639 -2.5771 -7.2926 23 1 15.7119 -1.5888 -8.1919 24 1 15.8885 -2.7485 -6.0695 25 1 14.9425 -3.8801 -7.9944 26 6 10.5390 -2.3245 -5.8151 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8463 -0.8901 32 1 3.8514 0.5683 0.8410 33 1 3.9785 2.1765 0.0889 34 1 5.7351 -0.2134 -0.5103 35 1 5.8628 1.3950 -1.2622 36 1 5.3708 0.3987 -3.4786 37 1 5.2429 -1.2099 -2.7273 38 1 7.5944 -1.0395 -1.9603 39 1 7.7231 0.5691 -2.7115 40 1 6.8624 -1.2666 -4.6782 41 1 7.9887 -3.3917 -6.5015 42 1 7.1530 -1.8563 -6.1536 43 1 7.7568 -2.1238 -8.5858 44 1 8.5020 -0.6923 -7.8336 45 1 9.8603 -3.3999 -8.2116 46 1 10.1411 -1.9575 -9.2157 47 1 13.9793 -0.9850 -5.2023 48 1 11.2085 -1.8843 -5.0762 49 1 10.6358 -3.4101 -5.7983 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596259096.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:09 Heat of formation + Delta-G solvation = -152.223480 kcal Electronic energy + Delta-G solvation = -26173.514494 eV Core-core repulsion = 22327.715089 eV Total energy + Delta-G solvation = -3845.799405 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.27879 -39.48527 -38.62681 -38.20813 -36.38698 -35.27651 -33.63560 -32.71781 -31.49148 -30.74050 -27.35552 -27.05887 -26.64500 -25.19452 -23.51195 -23.44626 -22.61518 -21.69534 -20.29577 -19.04681 -18.25362 -17.95314 -17.79165 -17.18838 -16.97811 -16.59934 -16.32798 -16.27383 -16.16558 -15.34312 -15.24570 -15.17843 -15.04518 -14.50697 -14.42867 -14.28128 -13.93817 -13.58176 -13.48009 -13.15290 -12.87496 -12.78426 -12.65975 -12.55711 -12.26992 -12.21664 -12.20225 -12.02226 -11.87879 -11.83206 -11.61542 -11.22405 -10.93882 -10.81620 -10.63886 -10.55420 -10.49924 -10.16134 -9.24618 -8.08104 -6.26041 1.41380 1.42579 1.53530 1.75405 2.24705 2.43212 2.64747 2.88368 3.11517 3.21770 3.97482 3.99132 4.03846 4.07519 4.17461 4.20735 4.25998 4.31016 4.45941 4.49816 4.50601 4.55529 4.60102 4.61638 4.63419 4.68942 4.75045 4.79002 4.83097 4.87183 4.88137 5.10615 5.11631 5.12971 5.28209 5.29582 5.34579 5.54533 5.58544 5.67031 5.91303 6.00091 6.17475 6.18696 6.30713 6.37888 6.87545 7.14725 7.43964 7.69449 8.94976 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.029019 B = 0.002006 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.645111 B =13955.113266 C =14689.090305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.417 6.417 3 C 0.059 3.941 4 C 0.056 3.944 5 O -0.402 6.402 6 C 0.066 3.934 7 C -0.113 4.113 8 C 0.143 3.857 9 N -0.734 5.734 10 C 0.692 3.308 11 O -0.640 6.640 12 N -0.628 5.628 13 C 0.109 3.891 14 C -0.126 4.126 15 C -0.104 4.104 16 C 0.036 3.964 17 H -0.017 1.017 18 C -0.536 4.536 19 H 0.063 0.937 20 C 0.008 3.992 21 N -0.915 5.915 22 Si 0.959 3.041 23 H -0.276 1.276 24 H -0.288 1.288 25 H -0.261 1.261 26 C 0.143 3.857 27 H 0.047 0.953 28 H 0.090 0.910 29 H 0.055 0.945 30 H 0.088 0.912 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.085 0.915 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.056 0.944 39 H 0.053 0.947 40 H 0.409 0.591 41 H 0.081 0.919 42 H 0.100 0.900 43 H 0.105 0.895 44 H 0.048 0.952 45 H 0.058 0.942 46 H 0.051 0.949 47 H 0.259 0.741 48 H 0.075 0.925 49 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.595 3.190 8.480 28.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.337 6.337 3 C -0.017 4.017 4 C -0.020 4.020 5 O -0.322 6.322 6 C -0.011 4.011 7 C -0.151 4.151 8 C 0.019 3.981 9 N -0.394 5.394 10 C 0.393 3.607 11 O -0.522 6.522 12 N -0.364 5.364 13 C -0.013 4.013 14 C -0.164 4.164 15 C -0.142 4.142 16 C 0.017 3.983 17 H 0.002 0.998 18 C -0.574 4.574 19 H 0.081 0.919 20 C -0.192 4.192 21 N -0.553 5.553 22 Si 0.784 3.216 23 H -0.201 1.201 24 H -0.214 1.214 25 H -0.185 1.185 26 C 0.020 3.980 27 H 0.066 0.934 28 H 0.109 0.891 29 H 0.073 0.927 30 H 0.106 0.894 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.103 0.897 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.248 0.752 41 H 0.099 0.901 42 H 0.118 0.882 43 H 0.123 0.877 44 H 0.067 0.933 45 H 0.077 0.923 46 H 0.070 0.930 47 H 0.068 0.932 48 H 0.093 0.907 49 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -25.896 3.290 9.021 27.619 hybrid contribution 1.165 0.171 -0.060 1.179 sum -24.731 3.461 8.961 26.531 Atomic orbital electron populations 1.22903 0.79637 1.03629 1.00873 1.87920 1.21364 1.28760 1.95612 1.22722 0.91958 0.84980 1.02061 1.22734 0.93916 0.98532 0.86866 1.87874 1.22446 1.82634 1.39218 1.22339 0.81262 1.00262 0.97268 1.21490 0.92623 1.02896 0.98048 1.20991 0.95355 0.97429 0.84338 1.45044 1.05262 1.67310 1.21821 1.16201 0.83518 0.78977 0.81956 1.90885 1.47918 1.59207 1.54154 1.47694 1.09926 1.58728 1.20073 1.21879 0.89603 1.01120 0.88695 1.21914 0.97462 1.00201 0.96848 1.21500 0.94392 1.00005 0.98304 1.18859 0.93829 0.93971 0.91665 0.99836 1.21525 0.92645 1.32630 1.10645 0.91877 1.25932 1.03284 0.95076 0.94876 1.70114 1.31236 1.37635 1.16359 0.85541 0.79438 0.79106 0.77490 1.20127 1.21406 1.18509 1.21485 0.79395 0.96600 1.00548 0.93439 0.89101 0.92675 0.89422 0.92277 0.92430 0.89662 0.92519 0.92000 0.89746 0.89852 0.92562 0.92816 0.75218 0.90084 0.88151 0.87653 0.93336 0.92320 0.93016 0.93199 0.90652 0.94690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.52 16 2 O -0.42 -7.51 10.67 -144.34 -1.54 -9.05 16 3 C 0.06 0.76 6.32 71.98 0.45 1.21 16 4 C 0.06 0.79 6.32 71.98 0.45 1.25 16 5 O -0.40 -7.92 10.31 -144.34 -1.49 -9.40 16 6 C 0.07 1.14 5.94 71.98 0.43 1.57 16 7 C -0.11 -2.05 5.70 30.60 0.17 -1.87 16 8 C 0.14 3.67 5.68 86.38 0.49 4.16 16 9 N -0.73 -21.72 5.46 -478.53 -2.62 -24.33 16 10 C 0.69 29.51 8.29 179.05 1.49 30.99 16 11 O -0.64 -34.66 15.77 -3.97 -0.06 -34.73 16 12 N -0.63 -26.00 2.98 -837.74 -2.50 -28.50 16 13 C 0.11 3.11 6.39 86.36 0.55 3.67 16 14 C -0.13 -3.74 6.08 30.67 0.19 -3.56 16 15 C -0.10 -4.07 5.11 30.62 0.16 -3.92 16 16 C 0.04 1.87 2.24 -11.61 -0.03 1.84 16 17 H -0.02 -0.99 8.14 -2.38 -0.02 -1.01 16 18 C -0.54 -30.08 8.57 25.60 0.22 -29.86 16 19 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 20 C 0.01 0.44 5.30 84.65 0.45 0.89 16 21 N -0.91 -57.05 11.39 21.45 0.24 -56.80 16 22 Si 0.96 45.01 29.54 68.60 2.03 47.04 16 23 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 24 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 25 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 26 C 0.14 7.35 5.39 86.22 0.46 7.82 16 27 H 0.05 0.44 8.14 -2.38 -0.02 0.42 16 28 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 32 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.41 9.03 5.96 -92.71 -0.55 8.47 16 41 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.10 2.06 5.65 -2.39 -0.01 2.05 16 43 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 44 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 46 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 47 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 48 H 0.08 4.67 5.10 -2.39 -0.01 4.66 16 49 H 0.03 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -80.47 391.37 1.17 -79.30 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: 0.36 Total: 20.75 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: 6.74 Total: 15.71 kcal Atomic # 7 Polarization: -104.76 SS G_CDS: -4.87 Total: -109.63 kcal Atomic # 8 Polarization: -50.09 SS G_CDS: -3.09 Total: -53.18 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -80.47 1.17 -79.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596259096.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.924 kcal (2) G-P(sol) polarization free energy of solvation -80.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds