Wall clock time and date at job start Tue Mar 31 2020 10:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42902 * 109.47405 * 2 1 4 4 N 1.46298 * 114.00017 * 179.97438 * 3 2 1 5 5 C 1.46848 * 111.00044 * 244.20850 * 4 3 2 6 6 C 1.53037 * 109.52342 * 174.16003 * 5 4 3 7 7 C 1.53122 * 109.27708 * 59.17705 * 6 5 4 8 8 C 1.53002 * 109.52057 * 182.43785 * 7 6 5 9 9 C 1.50699 * 109.47242 * 294.68220 * 8 7 6 10 10 O 1.21287 * 120.00157 * 354.01922 * 9 8 7 11 11 N 1.34776 * 119.99770 * 174.00876 * 9 8 7 12 12 C 1.37099 * 120.00009 * 5.11098 * 11 9 8 13 13 H 1.07998 * 119.99929 * 325.09518 * 12 11 9 14 14 C 1.38947 * 119.99840 * 145.10001 * 12 11 9 15 15 N 1.31414 * 119.99935 * 337.36779 * 14 12 11 16 16 Si 1.86799 * 120.00015 * 157.37620 * 14 12 11 17 17 H 1.48497 * 109.47427 * 89.99615 * 16 14 12 18 18 H 1.48505 * 109.47084 * 209.99901 * 16 14 12 19 19 H 1.48496 * 109.46953 * 329.99308 * 16 14 12 20 20 C 1.46498 * 120.00060 * 185.10831 * 11 9 8 21 21 C 1.52998 * 109.47268 * 90.00074 * 20 11 9 22 22 O 1.42897 * 109.46842 * 65.00507 * 21 20 11 23 23 C 1.42906 * 113.99809 * 180.02562 * 22 21 20 24 24 C 1.53119 * 109.16238 * 302.34754 * 7 6 5 25 25 C 1.46849 * 111.00101 * 119.99489 * 4 3 2 26 26 H 1.09005 * 109.46699 * 60.00355 * 1 2 3 27 27 H 1.08994 * 109.47428 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47110 * 300.00832 * 1 2 3 29 29 H 1.09005 * 109.46699 * 119.99645 * 2 1 3 30 30 H 1.09001 * 109.47110 * 239.99168 * 2 1 3 31 31 H 1.08995 * 109.45889 * 294.17426 * 5 4 3 32 32 H 1.08994 * 109.45967 * 54.14356 * 5 4 3 33 33 H 1.08999 * 109.50248 * 299.23872 * 6 5 4 34 34 H 1.08995 * 109.53468 * 179.13581 * 6 5 4 35 35 H 1.09002 * 109.57193 * 62.28568 * 7 6 5 36 36 H 1.08996 * 109.46729 * 54.68701 * 8 7 6 37 37 H 1.09004 * 109.46558 * 174.68487 * 8 7 6 38 38 H 0.97002 * 119.99973 * 185.55834 * 15 14 12 39 39 H 1.08997 * 109.47397 * 210.00660 * 20 11 9 40 40 H 1.09009 * 109.47040 * 330.00116 * 20 11 9 41 41 H 1.08999 * 109.46992 * 184.99998 * 21 20 11 42 42 H 1.08999 * 109.47015 * 304.99947 * 21 20 11 43 43 H 1.09006 * 109.47232 * 59.99638 * 23 22 21 44 44 H 1.08999 * 109.46770 * 179.97438 * 23 22 21 45 45 H 1.09002 * 109.46985 * 299.99705 * 23 22 21 46 46 H 1.09001 * 109.50137 * 297.71353 * 24 7 6 47 47 H 1.08997 * 109.53459 * 177.61741 * 24 7 6 48 48 H 1.08996 * 109.46204 * 305.85880 * 25 4 3 49 49 H 1.09005 * 109.45627 * 65.83521 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 7 3.4648 1.4627 0.0006 5 6 3.9419 2.0991 1.2351 6 6 5.4717 2.0716 1.2665 7 6 6.0159 2.8152 0.0435 8 6 7.5440 2.7389 0.0370 9 6 8.0894 3.4883 1.2253 10 8 7.3402 4.1203 1.9398 11 7 9.4096 3.4559 1.4943 12 6 10.2701 2.8296 0.6300 13 1 9.9537 1.9429 0.1010 14 6 11.5494 3.3357 0.4349 15 7 11.8028 4.5990 0.6938 16 14 12.9089 2.2206 -0.1956 17 1 12.9348 2.2622 -1.6798 18 1 14.2158 2.6844 0.3355 19 1 12.6568 0.8287 0.2563 20 6 9.9253 4.0901 2.7101 21 6 9.9277 3.0737 3.8537 22 8 10.8494 2.0232 3.5553 23 6 10.9285 1.0151 4.5650 24 6 5.4654 2.1625 -1.2275 25 6 3.9359 2.1873 -1.1866 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5140 0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.8934 -0.5140 -0.8899 31 1 3.5965 3.1323 1.2678 32 1 3.5511 1.5581 2.0968 33 1 5.8175 1.0381 1.2476 34 1 5.8264 2.5575 2.1754 35 1 5.7034 3.8587 0.0818 36 1 7.8559 1.6959 0.0907 37 1 7.9260 3.1857 -0.8809 38 1 12.6726 4.9724 0.4822 39 1 10.9420 4.4411 2.5337 40 1 9.2903 4.9351 2.9764 41 1 10.2268 3.5677 4.7781 42 1 8.9275 2.6570 3.9716 43 1 9.9489 0.5556 4.6972 44 1 11.6485 0.2544 4.2633 45 1 11.2480 1.4661 5.5045 46 1 5.8112 1.1304 -1.2856 47 1 5.8152 2.7131 -2.1008 48 1 3.5408 1.7105 -2.0836 49 1 3.5906 3.2203 -1.1423 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597755163.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:46 Heat of formation + Delta-G solvation = -85.224470 kcal Electronic energy + Delta-G solvation = -27716.730143 eV Core-core repulsion = 23873.836033 eV Total energy + Delta-G solvation = -3842.894110 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.22088 -38.14434 -36.98173 -36.20474 -34.62795 -32.71328 -31.52734 -30.68661 -30.49920 -29.31415 -26.84570 -25.73690 -24.58736 -22.98667 -22.82947 -22.36179 -21.16484 -19.38887 -18.92871 -17.29303 -16.75956 -16.13996 -15.65614 -15.40333 -15.32858 -15.00868 -14.54218 -14.42743 -14.41984 -14.28105 -13.86269 -13.71031 -13.35887 -13.28120 -12.95836 -12.39262 -12.21907 -12.17683 -11.95787 -11.91044 -11.57675 -11.46558 -11.20641 -11.13347 -11.03891 -10.97747 -10.79922 -10.62990 -10.33520 -10.31880 -10.18150 -9.99656 -9.94248 -9.75588 -9.08355 -8.94467 -8.62573 -8.32173 -7.43338 -6.28560 -3.91109 2.56769 3.18088 3.28873 3.35235 3.93688 4.20728 4.53242 4.71196 4.72986 4.98613 5.08048 5.10295 5.14604 5.15598 5.25392 5.37355 5.46920 5.51683 5.57000 5.67242 5.71988 5.73320 5.80718 5.83014 5.93074 5.94304 5.98891 6.00685 6.05469 6.09153 6.11332 6.19499 6.28753 6.35467 6.37273 6.48840 6.60381 6.67704 6.83393 6.85760 6.97464 7.13493 7.32624 7.56876 7.85673 8.05648 8.43840 9.18356 9.59302 10.00459 10.74676 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.017632 B = 0.003208 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.667337 B = 8726.656825 C = 9297.262085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.069 3.931 3 O -0.271 6.271 4 N -0.361 5.361 5 C 0.046 3.954 6 C -0.107 4.107 7 C -0.075 4.075 8 C -0.112 4.112 9 C 0.468 3.532 10 O -0.611 6.611 11 N -0.430 5.430 12 C -0.324 4.324 13 H 0.087 0.913 14 C 0.051 3.949 15 N -0.866 5.866 16 Si 0.915 3.085 17 H -0.281 1.281 18 H -0.284 1.284 19 H -0.268 1.268 20 C 0.107 3.893 21 C 0.055 3.945 22 O -0.361 6.361 23 C 0.030 3.970 24 C -0.109 4.109 25 C 0.046 3.954 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.043 0.957 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.268 0.732 39 H 0.117 0.883 40 H 0.071 0.929 41 H 0.037 0.963 42 H 0.037 0.963 43 H 0.031 0.969 44 H 0.077 0.923 45 H 0.029 0.971 46 H 0.072 0.928 47 H 0.076 0.924 48 H 0.077 0.923 49 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.198 -7.800 -0.063 13.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.009 4.009 3 O -0.276 6.276 4 N -0.130 5.130 5 C -0.082 4.082 6 C -0.144 4.144 7 C -0.094 4.094 8 C -0.152 4.152 9 C 0.257 3.743 10 O -0.499 6.499 11 N -0.147 5.147 12 C -0.452 4.452 13 H 0.105 0.895 14 C -0.154 4.154 15 N -0.503 5.503 16 Si 0.742 3.258 17 H -0.208 1.208 18 H -0.210 1.210 19 H -0.193 1.193 20 C -0.017 4.017 21 C -0.023 4.023 22 O -0.280 6.280 23 C -0.067 4.067 24 C -0.147 4.147 25 C -0.082 4.082 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.113 0.887 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.079 0.921 39 H 0.134 0.866 40 H 0.089 0.911 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.050 0.950 44 H 0.095 0.905 45 H 0.048 0.952 46 H 0.091 0.909 47 H 0.094 0.906 48 H 0.095 0.905 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -11.192 -7.682 0.166 13.576 hybrid contribution 0.492 0.033 0.024 0.493 sum -10.701 -7.648 0.190 13.154 Atomic orbital electron populations 1.21771 0.94030 1.02196 1.02775 1.22229 0.93543 0.84658 1.00471 1.90656 1.13771 1.26243 1.96916 1.67567 0.90820 1.50926 1.03707 1.22434 0.96536 0.97897 0.91317 1.21730 0.91330 1.00826 1.00563 1.20999 0.94896 1.00019 0.93472 1.21366 0.93639 1.01236 0.98938 1.20395 0.83253 0.83740 0.86885 1.90477 1.58501 1.47389 1.53513 1.43353 1.04678 1.48409 1.18259 1.19254 0.94086 1.08967 1.22849 0.89539 1.25202 0.98891 0.95009 0.96330 1.69809 1.23627 1.11456 1.45440 0.86138 0.80506 0.81041 0.78142 1.20752 1.20968 1.19297 1.21513 1.03839 0.92934 0.83366 1.23019 0.91606 0.89568 0.98065 1.88166 1.62615 1.34413 1.42757 1.22646 1.00238 0.92098 0.91719 1.21702 0.92181 1.02098 0.98735 1.22372 0.96061 0.97127 0.92656 0.92129 0.90978 0.92113 0.93336 0.93317 0.93848 0.90643 0.91834 0.88655 0.90675 0.90371 0.89619 0.92137 0.86584 0.91091 0.94445 0.94484 0.95031 0.90493 0.95240 0.90916 0.90561 0.90462 0.93911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 10.28 37.16 0.38 -0.89 16 2 C 0.07 0.76 7.16 37.16 0.27 1.03 16 3 O -0.27 -3.88 10.60 -13.92 -0.15 -4.03 16 4 N -0.36 -5.23 5.00 -113.82 -0.57 -5.80 16 5 C 0.05 0.69 5.99 -3.83 -0.02 0.67 16 6 C -0.11 -1.73 5.10 -26.65 -0.14 -1.86 16 7 C -0.07 -1.24 1.90 -90.49 -0.17 -1.41 16 8 C -0.11 -2.13 3.87 -27.88 -0.11 -2.24 16 9 C 0.47 10.88 7.26 -10.99 -0.08 10.80 16 10 O -0.61 -15.13 13.78 5.55 0.08 -15.06 16 11 N -0.43 -10.60 2.52 -114.81 -0.29 -10.89 16 12 C -0.32 -8.13 8.26 -14.93 -0.12 -8.26 16 13 H 0.09 2.09 6.86 -52.49 -0.36 1.73 16 14 C 0.05 1.29 4.95 -17.47 -0.09 1.20 16 15 N -0.87 -22.95 11.35 55.50 0.63 -22.32 16 16 Si 0.91 20.03 29.61 -169.99 -5.03 14.99 16 17 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 18 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 20 C 0.11 2.55 5.47 -4.04 -0.02 2.53 16 21 C 0.06 1.14 6.28 37.16 0.23 1.37 16 22 O -0.36 -7.69 10.18 -35.23 -0.36 -8.05 16 23 C 0.03 0.48 11.01 101.05 1.11 1.60 16 24 C -0.11 -1.48 5.38 -26.66 -0.14 -1.62 16 25 C 0.05 0.62 5.99 -3.84 -0.02 0.59 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.10 1.78 6.26 -51.93 -0.33 1.45 16 35 H 0.07 1.37 7.86 -51.93 -0.41 0.96 16 36 H 0.08 1.44 7.50 -51.93 -0.39 1.05 16 37 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 38 H 0.27 6.75 8.32 -40.82 -0.34 6.41 16 39 H 0.12 2.99 5.37 -51.93 -0.28 2.71 16 40 H 0.07 1.70 7.36 -51.92 -0.38 1.31 16 41 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 48 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 49 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 389.33 15.07 5.87 5.87 Total: -1.00 -29.26 389.33 -7.64 -36.89 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -8.89 Total: 4.86 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: 1.08 Total: 3.52 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: -0.23 Total: -39.00 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -0.43 Total: -27.13 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.03 Total: 14.99 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -29.26 -7.64 -36.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597755163.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.333 kcal (2) G-P(sol) polarization free energy of solvation -29.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds