Wall clock time and date at job start Tue Mar 31 2020 10:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42902 * 109.47405 * 2 1 4 4 N 1.46298 * 114.00017 * 179.97438 * 3 2 1 5 5 C 1.46848 * 111.00044 * 244.20850 * 4 3 2 6 6 C 1.53037 * 109.52342 * 174.16003 * 5 4 3 7 7 C 1.53122 * 109.27708 * 59.17705 * 6 5 4 8 8 C 1.53002 * 109.52057 * 182.43785 * 7 6 5 9 9 C 1.50699 * 109.47242 * 294.68220 * 8 7 6 10 10 O 1.21287 * 120.00157 * 354.01922 * 9 8 7 11 11 N 1.34776 * 119.99770 * 174.00876 * 9 8 7 12 12 C 1.37099 * 120.00009 * 5.11098 * 11 9 8 13 13 H 1.07998 * 119.99929 * 325.09518 * 12 11 9 14 14 C 1.38947 * 119.99840 * 145.10001 * 12 11 9 15 15 N 1.31414 * 119.99935 * 337.36779 * 14 12 11 16 16 Si 1.86799 * 120.00015 * 157.37620 * 14 12 11 17 17 H 1.48497 * 109.47427 * 89.99615 * 16 14 12 18 18 H 1.48505 * 109.47084 * 209.99901 * 16 14 12 19 19 H 1.48496 * 109.46953 * 329.99308 * 16 14 12 20 20 C 1.46498 * 120.00060 * 185.10831 * 11 9 8 21 21 C 1.52998 * 109.47268 * 90.00074 * 20 11 9 22 22 O 1.42897 * 109.46842 * 65.00507 * 21 20 11 23 23 C 1.42906 * 113.99809 * 180.02562 * 22 21 20 24 24 C 1.53119 * 109.16238 * 302.34754 * 7 6 5 25 25 C 1.46849 * 111.00101 * 119.99489 * 4 3 2 26 26 H 1.09005 * 109.46699 * 60.00355 * 1 2 3 27 27 H 1.08994 * 109.47428 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47110 * 300.00832 * 1 2 3 29 29 H 1.09005 * 109.46699 * 119.99645 * 2 1 3 30 30 H 1.09001 * 109.47110 * 239.99168 * 2 1 3 31 31 H 1.08995 * 109.45889 * 294.17426 * 5 4 3 32 32 H 1.08994 * 109.45967 * 54.14356 * 5 4 3 33 33 H 1.08999 * 109.50248 * 299.23872 * 6 5 4 34 34 H 1.08995 * 109.53468 * 179.13581 * 6 5 4 35 35 H 1.09002 * 109.57193 * 62.28568 * 7 6 5 36 36 H 1.08996 * 109.46729 * 54.68701 * 8 7 6 37 37 H 1.09004 * 109.46558 * 174.68487 * 8 7 6 38 38 H 0.97002 * 119.99973 * 185.55834 * 15 14 12 39 39 H 1.08997 * 109.47397 * 210.00660 * 20 11 9 40 40 H 1.09009 * 109.47040 * 330.00116 * 20 11 9 41 41 H 1.08999 * 109.46992 * 184.99998 * 21 20 11 42 42 H 1.08999 * 109.47015 * 304.99947 * 21 20 11 43 43 H 1.09006 * 109.47232 * 59.99638 * 23 22 21 44 44 H 1.08999 * 109.46770 * 179.97438 * 23 22 21 45 45 H 1.09002 * 109.46985 * 299.99705 * 23 22 21 46 46 H 1.09001 * 109.50137 * 297.71353 * 24 7 6 47 47 H 1.08997 * 109.53459 * 177.61741 * 24 7 6 48 48 H 1.08996 * 109.46204 * 305.85880 * 25 4 3 49 49 H 1.09005 * 109.45627 * 65.83521 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 7 3.4648 1.4627 0.0006 5 6 3.9419 2.0991 1.2351 6 6 5.4717 2.0716 1.2665 7 6 6.0159 2.8152 0.0435 8 6 7.5440 2.7389 0.0370 9 6 8.0894 3.4883 1.2253 10 8 7.3402 4.1203 1.9398 11 7 9.4096 3.4559 1.4943 12 6 10.2701 2.8296 0.6300 13 1 9.9537 1.9429 0.1010 14 6 11.5494 3.3357 0.4349 15 7 11.8028 4.5990 0.6938 16 14 12.9089 2.2206 -0.1956 17 1 12.9348 2.2622 -1.6798 18 1 14.2158 2.6844 0.3355 19 1 12.6568 0.8287 0.2563 20 6 9.9253 4.0901 2.7101 21 6 9.9277 3.0737 3.8537 22 8 10.8494 2.0232 3.5553 23 6 10.9285 1.0151 4.5650 24 6 5.4654 2.1625 -1.2275 25 6 3.9359 2.1873 -1.1866 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5140 0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.8934 -0.5140 -0.8899 31 1 3.5965 3.1323 1.2678 32 1 3.5511 1.5581 2.0968 33 1 5.8175 1.0381 1.2476 34 1 5.8264 2.5575 2.1754 35 1 5.7034 3.8587 0.0818 36 1 7.8559 1.6959 0.0907 37 1 7.9260 3.1857 -0.8809 38 1 12.6726 4.9724 0.4822 39 1 10.9420 4.4411 2.5337 40 1 9.2903 4.9351 2.9764 41 1 10.2268 3.5677 4.7781 42 1 8.9275 2.6570 3.9716 43 1 9.9489 0.5556 4.6972 44 1 11.6485 0.2544 4.2633 45 1 11.2480 1.4661 5.5045 46 1 5.8112 1.1304 -1.2856 47 1 5.8152 2.7131 -2.1008 48 1 3.5408 1.7105 -2.0836 49 1 3.5906 3.2203 -1.1423 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597755163.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:46 Heat of formation + Delta-G solvation = -102.443401 kcal Electronic energy + Delta-G solvation = -27717.476812 eV Core-core repulsion = 23873.836033 eV Total energy + Delta-G solvation = -3843.640778 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.82865 -39.54631 -38.51215 -37.35854 -36.45496 -33.94837 -33.44473 -31.86766 -31.62151 -30.81476 -28.23562 -27.23334 -26.38951 -24.27266 -24.03105 -23.39969 -22.64952 -20.85190 -20.59946 -18.57596 -18.35238 -17.85248 -17.09999 -16.91822 -16.63589 -16.22075 -16.19170 -16.03619 -15.86369 -15.47598 -15.30941 -15.10719 -14.60067 -14.49057 -14.33446 -13.80123 -13.54123 -13.42616 -13.18183 -13.14329 -12.93706 -12.84148 -12.69689 -12.59361 -12.46762 -12.40413 -12.29479 -12.17965 -12.07804 -11.81338 -11.54503 -11.48769 -11.27958 -10.92463 -10.76596 -10.50572 -10.16557 -9.75738 -9.35791 -8.20072 -5.87654 1.44718 1.52195 1.52949 1.63510 2.10665 2.40601 2.97690 3.05437 3.26652 3.62475 3.82063 3.91578 4.09056 4.18091 4.24284 4.26345 4.29299 4.37802 4.41080 4.44410 4.52798 4.54427 4.57466 4.61801 4.63845 4.66276 4.70549 4.79382 4.81732 4.84546 4.88571 4.92656 5.03963 5.06425 5.07768 5.12085 5.24195 5.27473 5.32709 5.40971 5.51972 5.63428 5.77899 6.09991 6.10670 6.44381 6.51039 7.25749 7.71659 8.12536 8.83872 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.017632 B = 0.003208 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.667337 B = 8726.656825 C = 9297.262085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.062 3.938 3 O -0.286 6.286 4 N -0.364 5.364 5 C 0.053 3.947 6 C -0.098 4.098 7 C -0.069 4.069 8 C -0.102 4.102 9 C 0.456 3.544 10 O -0.632 6.632 11 N -0.443 5.443 12 C -0.331 4.331 13 H 0.095 0.905 14 C 0.010 3.990 15 N -0.899 5.899 16 Si 0.975 3.025 17 H -0.272 1.272 18 H -0.289 1.289 19 H -0.264 1.264 20 C 0.105 3.895 21 C 0.067 3.933 22 O -0.394 6.394 23 C 0.024 3.976 24 C -0.099 4.099 25 C 0.047 3.953 26 H 0.060 0.940 27 H 0.095 0.905 28 H 0.056 0.944 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.030 0.970 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.053 0.947 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.268 0.732 39 H 0.096 0.904 40 H 0.057 0.943 41 H 0.062 0.938 42 H 0.032 0.968 43 H 0.041 0.959 44 H 0.092 0.908 45 H 0.050 0.950 46 H 0.082 0.918 47 H 0.092 0.908 48 H 0.096 0.904 49 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.704 -10.030 -0.832 15.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.016 4.016 3 O -0.291 6.291 4 N -0.133 5.133 5 C -0.075 4.075 6 C -0.136 4.136 7 C -0.088 4.088 8 C -0.142 4.142 9 C 0.247 3.753 10 O -0.521 6.521 11 N -0.161 5.161 12 C -0.459 4.459 13 H 0.112 0.888 14 C -0.192 4.192 15 N -0.537 5.537 16 Si 0.800 3.200 17 H -0.197 1.197 18 H -0.215 1.215 19 H -0.189 1.189 20 C -0.019 4.019 21 C -0.010 4.010 22 O -0.312 6.312 23 C -0.072 4.072 24 C -0.137 4.137 25 C -0.081 4.081 26 H 0.079 0.921 27 H 0.114 0.886 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.048 0.952 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.078 0.922 39 H 0.114 0.886 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.050 0.950 43 H 0.059 0.941 44 H 0.110 0.890 45 H 0.068 0.932 46 H 0.101 0.899 47 H 0.110 0.890 48 H 0.115 0.885 49 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -11.708 -9.926 -0.605 15.361 hybrid contribution 0.595 0.727 0.325 0.994 sum -11.112 -9.199 -0.281 14.428 Atomic orbital electron populations 1.21778 0.92076 1.03716 1.02608 1.22480 0.95049 0.83303 1.00735 1.90651 1.13129 1.28347 1.96996 1.67560 0.91530 1.50666 1.03504 1.22288 0.95547 0.97345 0.92328 1.21565 0.92314 1.00640 0.99123 1.20929 0.93202 0.99227 0.95437 1.21338 0.95145 1.00920 0.96789 1.21155 0.82810 0.83607 0.87713 1.90457 1.58872 1.48304 1.54492 1.43592 1.05236 1.48626 1.18634 1.19515 0.94406 1.09093 1.22874 0.88786 1.25941 1.00619 0.95899 0.96726 1.69921 1.24013 1.12965 1.46829 0.85204 0.77500 0.79264 0.77998 1.19727 1.21454 1.18876 1.21434 1.02150 0.93761 0.84590 1.22781 0.91543 0.89193 0.97498 1.88092 1.62571 1.35409 1.45173 1.22884 1.01399 0.91372 0.91536 1.21631 0.92225 1.02465 0.97374 1.22410 0.95801 0.96869 0.93040 0.92094 0.88607 0.92464 0.93355 0.92732 0.95193 0.89911 0.91147 0.91529 0.92864 0.89391 0.89479 0.92185 0.88636 0.92502 0.91971 0.95004 0.94084 0.88970 0.93174 0.89897 0.88979 0.88541 0.94715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 10.28 71.98 0.74 -1.39 16 2 C 0.06 1.25 7.16 71.98 0.52 1.76 16 3 O -0.29 -7.76 10.60 -50.16 -0.53 -8.29 16 4 N -0.36 -10.02 5.00 -514.03 -2.57 -12.58 16 5 C 0.05 1.57 5.99 86.33 0.52 2.09 16 6 C -0.10 -3.18 5.10 30.65 0.16 -3.02 16 7 C -0.07 -2.25 1.90 -10.71 -0.02 -2.27 16 8 C -0.10 -3.86 3.87 29.85 0.12 -3.74 16 9 C 0.46 21.62 7.26 87.66 0.64 22.26 16 10 O -0.63 -32.31 13.78 -3.05 -0.04 -32.35 16 11 N -0.44 -22.23 2.52 -635.55 -1.60 -23.83 16 12 C -0.33 -16.62 8.26 84.04 0.69 -15.93 16 13 H 0.09 4.47 6.86 -2.91 -0.02 4.45 16 14 C 0.01 0.51 4.95 84.93 0.42 0.93 16 15 N -0.90 -48.37 11.35 21.66 0.25 -48.13 16 16 Si 0.98 40.63 29.61 68.60 2.03 42.66 16 17 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 18 H -0.29 -12.14 7.11 99.48 0.71 -11.44 16 19 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 20 C 0.10 5.12 5.47 86.38 0.47 5.59 16 21 C 0.07 2.79 6.28 71.98 0.45 3.24 16 22 O -0.39 -16.43 10.18 -148.98 -1.52 -17.95 16 23 C 0.02 0.73 11.01 113.37 1.25 1.98 16 24 C -0.10 -2.49 5.38 30.64 0.16 -2.32 16 25 C 0.05 1.17 5.99 86.32 0.52 1.69 16 26 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 27 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 30 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.07 2.55 6.26 -2.39 -0.01 2.53 16 35 H 0.05 1.97 7.86 -2.39 -0.02 1.95 16 36 H 0.09 3.14 7.50 -2.39 -0.02 3.12 16 37 H 0.09 3.26 8.14 -2.38 -0.02 3.24 16 38 H 0.27 13.73 8.32 -92.71 -0.77 12.96 16 39 H 0.10 5.09 5.37 -2.39 -0.01 5.07 16 40 H 0.06 2.84 7.36 -2.38 -0.02 2.82 16 41 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 44 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 45 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 47 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 48 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 49 H 0.03 0.93 8.14 -2.38 -0.02 0.91 16 Total: -1.00 -63.31 389.33 3.55 -59.76 By element: Atomic # 1 Polarization: 28.94 SS G_CDS: 0.90 Total: 29.84 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: 6.63 Total: 10.86 kcal Atomic # 7 Polarization: -80.61 SS G_CDS: -3.92 Total: -84.54 kcal Atomic # 8 Polarization: -56.50 SS G_CDS: -2.09 Total: -58.59 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.66 kcal Total: -63.31 3.55 -59.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597755163.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.680 kcal (2) G-P(sol) polarization free energy of solvation -63.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds