Wall clock time and date at job start Tue Mar 31 2020 10:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42905 * 109.46752 * 2 1 4 4 C 1.42905 * 113.99954 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47113 * 180.02562 * 4 3 2 6 6 H 1.08994 * 109.51399 * 54.89894 * 5 4 3 7 7 C 1.53295 * 109.51213 * 175.00090 * 5 4 3 8 8 N 1.47148 * 108.38707 * 172.27540 * 7 5 4 9 9 C 1.34777 * 120.98044 * 129.44098 * 8 7 5 10 10 O 1.21582 * 120.00358 * 4.70416 * 9 8 7 11 11 N 1.34785 * 119.99562 * 184.70880 * 9 8 7 12 12 C 1.46499 * 119.99481 * 184.77608 * 11 9 8 13 13 C 1.53002 * 109.47054 * 179.97438 * 12 11 9 14 14 C 1.52996 * 109.46883 * 59.99759 * 13 12 11 15 15 C 1.53002 * 109.46851 * 300.00355 * 13 12 11 16 16 C 1.50696 * 109.47469 * 180.02562 * 13 12 11 17 17 H 1.08004 * 119.99778 * 26.08575 * 16 13 12 18 18 C 1.37878 * 120.00153 * 205.81506 * 16 13 12 19 19 N 1.31507 * 120.00013 * 166.73713 * 18 16 13 20 20 Si 1.86797 * 119.99672 * 346.73599 * 18 16 13 21 21 H 1.48492 * 109.47278 * 93.79554 * 20 18 16 22 22 H 1.48501 * 109.46866 * 213.79431 * 20 18 16 23 23 H 1.48497 * 109.47414 * 333.79157 * 20 18 16 24 24 C 1.47157 * 118.03584 * 309.71809 * 8 7 5 25 25 C 1.52876 * 108.60635 * 50.22212 * 24 8 7 26 26 O 1.42961 * 109.30090 * 307.93624 * 25 24 8 27 27 H 1.09000 * 109.47081 * 299.99787 * 1 2 3 28 28 H 1.08997 * 109.46750 * 60.00010 * 1 2 3 29 29 H 1.09002 * 109.46748 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47511 * 240.00367 * 2 1 3 31 31 H 1.09000 * 109.47026 * 119.99552 * 2 1 3 32 32 H 1.09003 * 109.47018 * 60.00119 * 4 3 2 33 33 H 1.08997 * 109.46804 * 300.00184 * 4 3 2 34 34 H 1.09000 * 109.68068 * 52.54877 * 7 5 4 35 35 H 1.09000 * 109.68243 * 292.00398 * 7 5 4 36 36 H 0.96997 * 120.00125 * 4.77558 * 11 9 8 37 37 H 1.09000 * 109.47272 * 60.00162 * 12 11 9 38 38 H 1.08996 * 109.47569 * 299.99573 * 12 11 9 39 39 H 1.09002 * 109.46995 * 197.95112 * 14 13 12 40 40 H 1.08996 * 109.47758 * 317.95208 * 14 13 12 41 41 H 1.09003 * 109.47107 * 77.95434 * 14 13 12 42 42 H 1.08999 * 109.47158 * 297.58597 * 15 13 12 43 43 H 1.08995 * 109.47517 * 57.59178 * 15 13 12 44 44 H 1.09000 * 109.46730 * 177.59415 * 15 13 12 45 45 H 0.97001 * 119.99682 * 179.97438 * 19 18 16 46 46 H 1.08995 * 109.68219 * 170.00607 * 24 8 7 47 47 H 1.08995 * 109.67865 * 290.56097 * 24 8 7 48 48 H 1.09003 * 109.58186 * 187.92026 * 25 24 8 49 49 H 1.09005 * 109.37073 * 67.82028 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4309 1.4603 0.0006 5 6 3.8253 2.9385 0.0012 6 1 3.3481 3.4423 0.8416 7 6 5.3480 3.0621 0.1277 8 7 5.7164 4.4742 -0.0609 9 6 6.5131 5.1073 0.8228 10 8 7.0081 4.4902 1.7460 11 7 6.7612 6.4248 0.6830 12 6 7.7088 7.0908 1.5800 13 6 7.8071 8.5720 1.2093 14 6 6.4300 9.2245 1.3465 15 6 8.2926 8.7049 -0.2356 16 6 8.7823 9.2571 2.1315 17 1 9.5733 8.6895 2.5991 18 6 8.6682 10.6096 2.3740 19 7 9.3381 11.1591 3.3633 20 14 7.5620 11.6614 1.2972 21 1 6.2200 11.7700 1.9233 22 1 8.1530 13.0163 1.1549 23 1 7.4339 11.0341 -0.0427 24 6 5.1840 5.1765 -1.2394 25 6 3.6737 4.9483 -1.3022 26 8 3.4038 3.5467 -1.2221 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8935 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.8341 0.9766 -0.8892 33 1 3.8333 0.9769 0.8908 34 1 5.8306 2.4518 -0.6356 35 1 5.6624 2.7296 1.1170 36 1 6.3123 6.9318 -0.0114 37 1 8.6900 6.6263 1.4818 38 1 7.3631 6.9958 2.6093 39 1 6.4168 10.1645 0.7950 40 1 5.6693 8.5560 0.9434 41 1 6.2229 9.4178 2.3991 42 1 9.2917 8.2782 -0.3238 43 1 7.6104 8.1730 -0.8986 44 1 8.3218 9.7585 -0.5135 45 1 9.2581 12.1106 3.5336 46 1 5.3898 6.2435 -1.1549 47 1 5.6497 4.7826 -2.1427 48 1 3.2836 5.3412 -2.2412 49 1 3.1958 5.4595 -0.4664 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599072890.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:34 Heat of formation + Delta-G solvation = -95.495673 kcal Electronic energy + Delta-G solvation = -27446.237139 eV Core-core repulsion = 23602.897636 eV Total energy + Delta-G solvation = -3843.339502 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.55792 -38.95795 -37.92715 -36.80948 -34.72091 -33.54563 -32.78478 -31.50902 -31.04434 -28.55789 -26.72934 -26.43374 -25.32050 -24.49586 -23.51396 -23.10249 -21.55005 -19.72325 -19.34780 -18.12275 -17.24093 -17.01697 -16.21022 -16.00390 -15.84934 -15.75060 -15.32661 -15.27594 -15.04526 -14.35583 -13.98238 -13.87249 -13.63064 -13.53475 -13.24622 -13.00501 -12.86911 -12.58736 -12.36556 -12.20318 -12.00380 -11.90941 -11.79915 -11.67316 -11.30827 -11.26832 -10.90187 -10.47779 -10.35316 -10.31794 -10.22320 -10.01859 -9.92655 -9.83522 -9.16276 -8.80284 -8.73483 -8.49470 -8.30865 -6.16277 -4.13106 2.59374 3.23179 3.23657 3.26298 3.37842 3.40623 3.48463 4.07808 4.33259 4.52268 4.61131 4.69317 4.74273 4.77229 4.87156 4.93544 4.99199 5.03751 5.10633 5.14241 5.18653 5.34490 5.40454 5.48584 5.52495 5.56801 5.71521 5.75792 5.77750 5.98315 6.06757 6.22756 6.32069 6.41554 6.51157 6.56979 6.68659 6.80505 6.82337 6.91379 6.95003 7.05441 7.20559 7.42785 7.70456 8.16558 8.44547 8.81716 8.89834 9.47733 10.96904 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.028027 B = 0.002614 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.786579 B =10709.520106 C =10973.186021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.381 6.381 4 C 0.074 3.926 5 C 0.079 3.921 6 H 0.072 0.928 7 C 0.107 3.893 8 N -0.638 5.638 9 C 0.705 3.295 10 O -0.590 6.590 11 N -0.737 5.737 12 C 0.157 3.843 13 C 0.030 3.970 14 C -0.162 4.162 15 C -0.145 4.145 16 C -0.511 4.511 17 H 0.077 0.923 18 C 0.074 3.926 19 N -0.891 5.891 20 Si 0.894 3.106 21 H -0.289 1.289 22 H -0.307 1.307 23 H -0.253 1.253 24 C 0.076 3.924 25 C 0.048 3.952 26 O -0.368 6.368 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.391 0.609 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.047 0.953 40 H 0.035 0.965 41 H 0.062 0.938 42 H 0.048 0.952 43 H 0.018 0.982 44 H 0.056 0.944 45 H 0.264 0.736 46 H 0.089 0.911 47 H 0.077 0.923 48 H 0.107 0.893 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.334 -18.185 -11.512 26.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.300 6.300 4 C -0.003 4.003 5 C 0.020 3.980 6 H 0.090 0.910 7 C -0.017 4.017 8 N -0.377 5.377 9 C 0.407 3.593 10 O -0.468 6.468 11 N -0.393 5.393 12 C 0.034 3.966 13 C 0.029 3.971 14 C -0.219 4.219 15 C -0.203 4.203 16 C -0.549 4.549 17 H 0.095 0.905 18 C -0.128 4.128 19 N -0.527 5.527 20 Si 0.728 3.272 21 H -0.216 1.216 22 H -0.236 1.236 23 H -0.180 1.180 24 C -0.048 4.048 25 C -0.029 4.029 26 O -0.286 6.286 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.123 0.877 36 H 0.228 0.772 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.054 0.946 41 H 0.081 0.919 42 H 0.067 0.933 43 H 0.037 0.963 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.107 0.893 47 H 0.096 0.904 48 H 0.125 0.875 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.069 -18.379 -10.829 26.118 hybrid contribution -0.462 0.956 -0.709 1.277 sum -15.532 -17.423 -11.538 26.037 Atomic orbital electron populations 1.21738 0.93708 1.02161 1.03249 1.22470 0.95705 0.83777 1.00051 1.87947 1.20350 1.26301 1.95427 1.22383 0.82187 0.94491 1.01286 1.22488 0.93793 0.93293 0.88448 0.90975 1.21912 0.93461 0.81916 1.04403 1.47225 1.53274 1.11709 1.25535 1.15894 0.79267 0.82347 0.81822 1.90897 1.55713 1.66237 1.33924 1.45722 1.48286 1.06920 1.38414 1.21467 0.90400 0.92558 0.92143 1.18721 0.93549 0.90811 0.94069 1.22448 0.97905 0.99527 1.02018 1.22278 0.99700 1.01103 0.97190 1.20716 1.13842 0.93756 1.26634 0.90527 1.25015 0.95529 0.97966 0.94319 1.69948 1.42943 1.12227 1.27610 0.87108 0.79691 0.78261 0.82135 1.21613 1.23571 1.18034 1.22247 0.95195 0.98137 0.89197 1.22906 0.94141 0.82718 1.03173 1.87999 1.81861 1.21589 1.37196 0.91844 0.91776 0.91146 0.93355 0.93395 0.92135 0.91370 0.90911 0.87737 0.77204 0.92303 0.91816 0.93439 0.94607 0.91875 0.93260 0.96283 0.92483 0.92558 0.89322 0.90449 0.87473 0.92466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.28 37.16 0.38 -0.60 16 2 C 0.06 0.42 6.66 37.16 0.25 0.67 16 3 O -0.38 -4.02 10.31 -39.66 -0.41 -4.43 16 4 C 0.07 0.67 5.61 37.16 0.21 0.87 16 5 C 0.08 0.84 3.06 -26.58 -0.08 0.76 16 6 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 7 C 0.11 1.23 5.91 -3.54 -0.02 1.21 16 8 N -0.64 -8.47 3.03 -178.26 -0.54 -9.00 16 9 C 0.71 12.17 8.31 -86.91 -0.72 11.44 16 10 O -0.59 -12.38 15.84 5.29 0.08 -12.30 16 11 N -0.74 -12.43 4.65 -65.22 -0.30 -12.73 16 12 C 0.16 3.20 4.55 -4.04 -0.02 3.18 16 13 C 0.03 0.64 0.50 -155.66 -0.08 0.57 16 14 C -0.16 -3.32 6.80 37.16 0.25 -3.06 16 15 C -0.15 -2.84 8.11 37.16 0.30 -2.54 16 16 C -0.51 -13.63 8.54 -34.44 -0.29 -13.93 16 17 H 0.08 2.25 8.06 -52.48 -0.42 1.83 16 18 C 0.07 2.06 5.27 -17.82 -0.09 1.96 16 19 N -0.89 -26.49 13.96 55.43 0.77 -25.72 16 20 Si 0.89 21.04 22.89 -169.99 -3.89 17.14 16 21 H -0.29 -6.72 7.06 56.52 0.40 -6.32 16 22 H -0.31 -7.43 7.11 56.52 0.40 -7.02 16 23 H -0.25 -5.41 4.29 56.52 0.24 -5.17 16 24 C 0.08 0.77 6.62 -3.75 -0.02 0.75 16 25 C 0.05 0.45 6.97 37.09 0.26 0.71 16 26 O -0.37 -4.18 10.36 -39.66 -0.41 -4.59 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.10 1.30 7.12 -51.93 -0.37 0.93 16 36 H 0.39 5.69 3.77 -40.82 -0.15 5.54 16 37 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 39 H 0.05 0.98 2.80 -51.93 -0.15 0.84 16 40 H 0.03 0.61 6.55 -51.93 -0.34 0.27 16 41 H 0.06 1.39 7.56 -51.93 -0.39 0.99 16 42 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.02 0.30 6.80 -51.93 -0.35 -0.05 16 44 H 0.06 1.16 4.93 -51.93 -0.26 0.91 16 45 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 46 H 0.09 0.84 5.65 -51.93 -0.29 0.54 16 47 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 370.35 15.07 5.58 5.58 Total: -1.00 -32.81 370.35 -7.16 -39.97 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -8.36 Total: 4.07 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: 0.32 Total: 2.00 kcal Atomic # 7 Polarization: -47.39 SS G_CDS: -0.07 Total: -47.46 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.74 Total: -21.32 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -3.89 Total: 17.14 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.81 -7.16 -39.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599072890.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.523 kcal (2) G-P(sol) polarization free energy of solvation -32.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds