Wall clock time and date at job start Tue Mar 31 2020 10:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42905 * 109.46752 * 2 1 4 4 C 1.42905 * 113.99954 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47113 * 180.02562 * 4 3 2 6 6 H 1.08994 * 109.51399 * 54.89894 * 5 4 3 7 7 C 1.53295 * 109.51213 * 175.00090 * 5 4 3 8 8 N 1.47148 * 108.38707 * 172.27540 * 7 5 4 9 9 C 1.34777 * 120.98044 * 129.44098 * 8 7 5 10 10 O 1.21582 * 120.00358 * 4.70416 * 9 8 7 11 11 N 1.34785 * 119.99562 * 184.70880 * 9 8 7 12 12 C 1.46499 * 119.99481 * 184.77608 * 11 9 8 13 13 C 1.53002 * 109.47054 * 179.97438 * 12 11 9 14 14 C 1.52996 * 109.46883 * 59.99759 * 13 12 11 15 15 C 1.53002 * 109.46851 * 300.00355 * 13 12 11 16 16 C 1.50696 * 109.47469 * 180.02562 * 13 12 11 17 17 H 1.08004 * 119.99778 * 26.08575 * 16 13 12 18 18 C 1.37878 * 120.00153 * 205.81506 * 16 13 12 19 19 N 1.31507 * 120.00013 * 166.73713 * 18 16 13 20 20 Si 1.86797 * 119.99672 * 346.73599 * 18 16 13 21 21 H 1.48492 * 109.47278 * 93.79554 * 20 18 16 22 22 H 1.48501 * 109.46866 * 213.79431 * 20 18 16 23 23 H 1.48497 * 109.47414 * 333.79157 * 20 18 16 24 24 C 1.47157 * 118.03584 * 309.71809 * 8 7 5 25 25 C 1.52876 * 108.60635 * 50.22212 * 24 8 7 26 26 O 1.42961 * 109.30090 * 307.93624 * 25 24 8 27 27 H 1.09000 * 109.47081 * 299.99787 * 1 2 3 28 28 H 1.08997 * 109.46750 * 60.00010 * 1 2 3 29 29 H 1.09002 * 109.46748 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47511 * 240.00367 * 2 1 3 31 31 H 1.09000 * 109.47026 * 119.99552 * 2 1 3 32 32 H 1.09003 * 109.47018 * 60.00119 * 4 3 2 33 33 H 1.08997 * 109.46804 * 300.00184 * 4 3 2 34 34 H 1.09000 * 109.68068 * 52.54877 * 7 5 4 35 35 H 1.09000 * 109.68243 * 292.00398 * 7 5 4 36 36 H 0.96997 * 120.00125 * 4.77558 * 11 9 8 37 37 H 1.09000 * 109.47272 * 60.00162 * 12 11 9 38 38 H 1.08996 * 109.47569 * 299.99573 * 12 11 9 39 39 H 1.09002 * 109.46995 * 197.95112 * 14 13 12 40 40 H 1.08996 * 109.47758 * 317.95208 * 14 13 12 41 41 H 1.09003 * 109.47107 * 77.95434 * 14 13 12 42 42 H 1.08999 * 109.47158 * 297.58597 * 15 13 12 43 43 H 1.08995 * 109.47517 * 57.59178 * 15 13 12 44 44 H 1.09000 * 109.46730 * 177.59415 * 15 13 12 45 45 H 0.97001 * 119.99682 * 179.97438 * 19 18 16 46 46 H 1.08995 * 109.68219 * 170.00607 * 24 8 7 47 47 H 1.08995 * 109.67865 * 290.56097 * 24 8 7 48 48 H 1.09003 * 109.58186 * 187.92026 * 25 24 8 49 49 H 1.09005 * 109.37073 * 67.82028 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4309 1.4603 0.0006 5 6 3.8253 2.9385 0.0012 6 1 3.3481 3.4423 0.8416 7 6 5.3480 3.0621 0.1277 8 7 5.7164 4.4742 -0.0609 9 6 6.5131 5.1073 0.8228 10 8 7.0081 4.4902 1.7460 11 7 6.7612 6.4248 0.6830 12 6 7.7088 7.0908 1.5800 13 6 7.8071 8.5720 1.2093 14 6 6.4300 9.2245 1.3465 15 6 8.2926 8.7049 -0.2356 16 6 8.7823 9.2571 2.1315 17 1 9.5733 8.6895 2.5991 18 6 8.6682 10.6096 2.3740 19 7 9.3381 11.1591 3.3633 20 14 7.5620 11.6614 1.2972 21 1 6.2200 11.7700 1.9233 22 1 8.1530 13.0163 1.1549 23 1 7.4339 11.0341 -0.0427 24 6 5.1840 5.1765 -1.2394 25 6 3.6737 4.9483 -1.3022 26 8 3.4038 3.5467 -1.2221 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8935 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.8341 0.9766 -0.8892 33 1 3.8333 0.9769 0.8908 34 1 5.8306 2.4518 -0.6356 35 1 5.6624 2.7296 1.1170 36 1 6.3123 6.9318 -0.0114 37 1 8.6900 6.6263 1.4818 38 1 7.3631 6.9958 2.6093 39 1 6.4168 10.1645 0.7950 40 1 5.6693 8.5560 0.9434 41 1 6.2229 9.4178 2.3991 42 1 9.2917 8.2782 -0.3238 43 1 7.6104 8.1730 -0.8986 44 1 8.3218 9.7585 -0.5135 45 1 9.2581 12.1106 3.5336 46 1 5.3898 6.2435 -1.1549 47 1 5.6497 4.7826 -2.1427 48 1 3.2836 5.3412 -2.2412 49 1 3.1958 5.4595 -0.4664 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599072890.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:33 Heat of formation + Delta-G solvation = -119.722113 kcal Electronic energy + Delta-G solvation = -27447.287676 eV Core-core repulsion = 23602.897636 eV Total energy + Delta-G solvation = -3844.390040 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.69690 -40.01758 -38.75222 -38.37277 -35.85707 -35.03856 -33.80878 -33.23075 -31.73683 -29.48227 -28.20450 -27.82070 -27.07780 -25.94221 -24.36970 -23.65285 -22.51400 -21.02292 -20.95468 -19.40682 -18.09454 -18.01760 -17.72822 -17.28398 -16.97011 -16.87579 -16.53890 -16.26740 -16.00150 -15.45083 -15.40385 -15.30302 -14.95582 -14.46647 -14.44227 -14.27180 -14.06664 -14.03394 -13.61307 -13.48784 -13.12008 -12.94218 -12.72926 -12.43615 -12.33305 -12.26502 -12.20582 -11.98252 -11.97089 -11.79374 -11.73958 -11.32031 -11.15849 -11.06375 -10.60630 -10.56513 -10.41685 -10.17062 -9.49337 -8.29503 -6.31020 1.34426 1.39648 1.46298 1.52252 2.04602 2.35309 2.57816 2.72002 2.86447 3.08355 3.72872 3.87174 3.91977 3.97963 4.06765 4.16664 4.19037 4.22864 4.27213 4.37252 4.39416 4.40827 4.48648 4.52615 4.57783 4.69838 4.72343 4.76512 4.78005 4.86420 4.87761 4.93078 4.93700 5.01187 5.05393 5.19685 5.28159 5.32181 5.41096 5.54083 5.72979 5.79543 5.81926 6.07587 6.26503 6.31122 6.72511 6.90855 7.33519 7.48682 8.87860 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.028027 B = 0.002614 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.786579 B =10709.520106 C =10973.186021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.049 3.951 3 O -0.407 6.407 4 C 0.074 3.926 5 C 0.086 3.914 6 H 0.055 0.945 7 C 0.107 3.893 8 N -0.632 5.632 9 C 0.702 3.298 10 O -0.634 6.634 11 N -0.725 5.725 12 C 0.174 3.826 13 C 0.029 3.971 14 C -0.161 4.161 15 C -0.140 4.140 16 C -0.516 4.516 17 H 0.027 0.973 18 C 0.013 3.987 19 N -0.947 5.947 20 Si 0.954 3.046 21 H -0.280 1.280 22 H -0.317 1.317 23 H -0.207 1.207 24 C 0.072 3.928 25 C 0.047 3.953 26 O -0.379 6.379 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.091 0.909 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.406 0.594 37 H 0.040 0.960 38 H 0.036 0.964 39 H 0.054 0.946 40 H 0.075 0.925 41 H 0.040 0.960 42 H 0.041 0.959 43 H 0.062 0.938 44 H 0.054 0.946 45 H 0.264 0.736 46 H 0.100 0.900 47 H 0.096 0.904 48 H 0.137 0.863 49 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.852 -18.942 -15.001 30.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.027 4.027 3 O -0.327 6.327 4 C -0.003 4.003 5 C 0.027 3.973 6 H 0.073 0.927 7 C -0.017 4.017 8 N -0.370 5.370 9 C 0.404 3.596 10 O -0.516 6.516 11 N -0.383 5.383 12 C 0.049 3.951 13 C 0.028 3.972 14 C -0.218 4.218 15 C -0.198 4.198 16 C -0.554 4.554 17 H 0.045 0.955 18 C -0.184 4.184 19 N -0.586 5.586 20 Si 0.784 3.216 21 H -0.207 1.207 22 H -0.247 1.247 23 H -0.132 1.132 24 C -0.051 4.051 25 C -0.030 4.030 26 O -0.297 6.297 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.109 0.891 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.246 0.754 37 H 0.058 0.942 38 H 0.055 0.945 39 H 0.072 0.928 40 H 0.093 0.907 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.080 0.920 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.119 0.881 47 H 0.114 0.886 48 H 0.155 0.845 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -17.637 -19.175 -14.390 29.763 hybrid contribution 0.353 1.052 0.437 1.193 sum -17.285 -18.123 -13.954 28.669 Atomic orbital electron populations 1.21766 0.93189 1.03317 1.02495 1.22676 0.96211 0.82693 1.01076 1.87904 1.20995 1.28178 1.95646 1.22428 0.81906 0.93444 1.02533 1.22392 0.92771 0.94317 0.87869 0.92675 1.22020 0.94286 0.81111 1.04272 1.47265 1.51940 1.12381 1.25441 1.16017 0.79526 0.82177 0.81899 1.90871 1.57572 1.67113 1.36035 1.45318 1.47791 1.07019 1.38190 1.20958 0.90264 0.92283 0.91564 1.18651 0.93259 0.90746 0.94547 1.22381 0.97739 1.00559 1.01082 1.22149 1.00404 1.01456 0.95756 1.21007 1.13579 0.93871 1.26953 0.95464 1.25955 0.97483 0.99458 0.95528 1.70116 1.45846 1.12547 1.30103 0.86160 0.77471 0.75656 0.82317 1.20713 1.24747 1.13217 1.22539 0.95710 0.98596 0.88216 1.23075 0.93536 0.81858 1.04509 1.87997 1.81935 1.22642 1.37155 0.92620 0.92465 0.89063 0.92283 0.92354 0.90939 0.90038 0.89055 0.89211 0.75400 0.94172 0.94535 0.92822 0.90652 0.94127 0.94009 0.91962 0.92758 0.92674 0.88148 0.88614 0.84549 0.93066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 10.28 71.98 0.74 -0.98 16 2 C 0.05 0.65 6.66 71.98 0.48 1.13 16 3 O -0.41 -8.00 10.31 -144.75 -1.49 -9.49 16 4 C 0.07 1.20 5.61 71.98 0.40 1.60 16 5 C 0.09 1.69 3.06 30.69 0.09 1.78 16 6 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 7 C 0.11 2.27 5.91 86.35 0.51 2.78 16 8 N -0.63 -15.36 3.03 -836.17 -2.53 -17.89 16 9 C 0.70 23.39 8.31 179.05 1.49 24.88 16 10 O -0.63 -26.93 15.84 -3.97 -0.06 -27.00 16 11 N -0.73 -22.97 4.65 -478.53 -2.23 -25.19 16 12 C 0.17 7.10 4.55 86.38 0.39 7.49 16 13 C 0.03 1.23 0.50 -52.93 -0.03 1.20 16 14 C -0.16 -6.10 6.80 71.98 0.49 -5.61 16 15 C -0.14 -5.02 8.11 71.98 0.58 -4.43 16 16 C -0.52 -28.37 8.54 25.60 0.22 -28.15 16 17 H 0.03 1.71 8.06 -2.91 -0.02 1.68 16 18 C 0.01 0.74 5.27 84.66 0.45 1.18 16 19 N -0.95 -58.74 13.96 21.45 0.30 -58.44 16 20 Si 0.95 42.37 22.89 68.60 1.57 43.94 16 21 H -0.28 -12.06 7.06 99.48 0.70 -11.36 16 22 H -0.32 -14.65 7.11 99.48 0.71 -13.94 16 23 H -0.21 -7.70 4.29 99.48 0.43 -7.28 16 24 C 0.07 1.17 6.62 86.21 0.57 1.74 16 25 C 0.05 0.72 6.97 71.94 0.50 1.22 16 26 O -0.38 -7.56 10.36 -144.75 -1.50 -9.06 16 27 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.06 0.63 8.14 -2.39 -0.02 0.62 16 32 H 0.07 0.99 8.14 -2.39 -0.02 0.98 16 33 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.09 2.20 7.12 -2.39 -0.02 2.19 16 36 H 0.41 10.13 3.77 -92.71 -0.35 9.79 16 37 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.05 1.98 2.80 -2.39 -0.01 1.97 16 40 H 0.07 2.24 6.55 -2.39 -0.02 2.22 16 41 H 0.04 1.71 7.56 -2.39 -0.02 1.70 16 42 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.06 1.69 6.80 -2.39 -0.02 1.68 16 44 H 0.05 1.97 4.93 -2.39 -0.01 1.96 16 45 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 46 H 0.10 1.39 5.65 -2.39 -0.01 1.38 16 47 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 48 H 0.14 1.30 8.14 -2.39 -0.02 1.28 16 49 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 Total: -1.00 -75.45 370.35 1.25 -74.20 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: 0.30 Total: 23.09 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: 6.89 Total: 5.84 kcal Atomic # 7 Polarization: -97.07 SS G_CDS: -4.46 Total: -101.52 kcal Atomic # 8 Polarization: -42.49 SS G_CDS: -3.05 Total: -45.54 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 1.57 Total: 43.94 kcal Total: -75.45 1.25 -74.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599072890.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.522 kcal (2) G-P(sol) polarization free energy of solvation -75.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds