Wall clock time and date at job start Tue Mar 31 2020 10:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42898 * 109.46819 * 2 1 4 4 C 1.42901 * 113.99907 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47199 * 180.02562 * 4 3 2 6 6 H 1.09005 * 109.51230 * 305.09507 * 5 4 3 7 7 C 1.53298 * 109.51432 * 185.00147 * 5 4 3 8 8 N 1.47147 * 108.38950 * 187.72264 * 7 5 4 9 9 C 1.34778 * 120.98314 * 230.55703 * 8 7 5 10 10 O 1.21587 * 120.00148 * 174.75518 * 9 8 7 11 11 N 1.34772 * 119.99794 * 354.75867 * 9 8 7 12 12 C 1.46507 * 119.99855 * 184.97770 * 11 9 8 13 13 C 1.52994 * 109.46937 * 179.97438 * 12 11 9 14 14 C 1.52998 * 109.47134 * 299.99668 * 13 12 11 15 15 C 1.53001 * 109.47560 * 60.00261 * 13 12 11 16 16 C 1.50710 * 109.47005 * 179.97438 * 13 12 11 17 17 H 1.07997 * 119.99892 * 0.02562 * 16 13 12 18 18 C 1.37875 * 119.99904 * 179.97438 * 16 13 12 19 19 N 1.31511 * 120.00286 * 359.97438 * 18 16 13 20 20 Si 1.86803 * 119.99598 * 180.02562 * 18 16 13 21 21 H 1.48495 * 109.47362 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47012 * 120.00171 * 20 18 16 23 23 H 1.48500 * 109.46878 * 239.99597 * 20 18 16 24 24 C 1.47153 * 118.03339 * 50.52880 * 8 7 5 25 25 C 1.53294 * 108.41731 * 309.44923 * 24 8 7 26 26 O 1.42954 * 109.55858 * 65.22992 * 5 4 3 27 27 H 1.09000 * 109.46985 * 59.99999 * 1 2 3 28 28 H 1.08998 * 109.46716 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47071 * 300.00202 * 1 2 3 30 30 H 1.08992 * 109.47159 * 240.00332 * 2 1 3 31 31 H 1.09000 * 109.46985 * 120.00001 * 2 1 3 32 32 H 1.09001 * 109.47014 * 59.99742 * 4 3 2 33 33 H 1.09003 * 109.47085 * 300.00066 * 4 3 2 34 34 H 1.09007 * 109.68387 * 67.99623 * 7 5 4 35 35 H 1.09002 * 109.68279 * 307.44615 * 7 5 4 36 36 H 0.96993 * 120.00796 * 4.97444 * 11 9 8 37 37 H 1.08999 * 109.46914 * 299.99589 * 12 11 9 38 38 H 1.08993 * 109.47361 * 59.99616 * 12 11 9 39 39 H 1.08998 * 109.47243 * 60.00333 * 14 13 12 40 40 H 1.09003 * 109.47219 * 180.02562 * 14 13 12 41 41 H 1.09002 * 109.47084 * 300.00014 * 14 13 12 42 42 H 1.08999 * 109.47524 * 59.99616 * 15 13 12 43 43 H 1.09003 * 109.47088 * 179.97438 * 15 13 12 44 44 H 1.08998 * 109.46630 * 299.99552 * 15 13 12 45 45 H 0.97001 * 120.00289 * 180.02562 * 19 18 16 46 46 H 1.09001 * 109.68034 * 69.19682 * 24 8 7 47 47 H 1.09005 * 109.67913 * 189.70612 * 24 8 7 48 48 H 1.09004 * 109.50938 * 172.24653 * 25 24 8 49 49 H 1.09000 * 109.51434 * 292.39504 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 6 3.8253 2.9384 0.0012 6 1 3.3488 3.4427 -0.8395 7 6 5.3482 3.0621 -0.1242 8 7 5.7164 4.4741 0.0655 9 6 6.5139 5.1077 -0.8172 10 8 6.7298 6.2981 -0.6959 11 7 7.0719 4.4218 -1.8343 12 6 8.0241 5.0842 -2.7292 13 6 8.5045 4.0904 -3.7886 14 6 9.1881 2.9055 -3.1035 15 6 7.3069 3.5898 -4.5986 16 6 9.4835 4.7720 -4.7096 17 1 9.7380 5.8101 -4.5544 18 6 10.0552 4.0701 -5.7495 19 7 9.7465 2.8056 -5.9375 20 14 11.2692 4.9148 -6.8905 21 1 11.4455 6.3273 -6.4677 22 1 12.5763 4.2126 -6.8300 23 1 10.7505 4.8760 -8.2814 24 6 5.1877 5.1740 1.2470 25 6 3.6726 4.9484 1.3059 26 8 3.4029 3.5460 1.2243 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5137 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 3.8340 0.9765 -0.8891 33 1 3.8333 0.9768 0.8908 34 1 5.6633 2.7302 -1.1135 35 1 5.8302 2.4513 0.6392 36 1 6.8433 3.4896 -1.9738 37 1 7.5372 5.9287 -3.2169 38 1 8.8775 5.4406 -2.1523 39 1 8.4797 2.4126 -2.4377 40 1 9.5308 2.1976 -3.8583 41 1 10.0413 3.2622 -2.5265 42 1 6.8199 4.4340 -5.0867 43 1 7.6493 2.8821 -5.3537 44 1 6.5985 3.0969 -3.9328 45 1 10.1489 2.3116 -6.6689 46 1 5.6535 4.7759 2.1484 47 1 5.3971 6.2407 1.1660 48 1 3.2823 5.3412 2.2448 49 1 3.1955 5.4600 0.4700 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599072891.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:36 Heat of formation + Delta-G solvation = -117.392920 kcal Electronic energy + Delta-G solvation = -27576.794653 eV Core-core repulsion = 23732.505615 eV Total energy + Delta-G solvation = -3844.289038 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.45352 -38.83729 -37.83396 -36.43581 -34.63281 -33.44595 -32.74591 -31.15168 -30.73155 -28.42560 -25.92558 -25.75590 -25.60825 -24.85856 -23.05239 -23.00133 -21.56814 -19.65727 -18.93745 -18.13096 -17.10845 -16.95078 -16.10700 -15.84919 -15.75887 -15.64107 -15.22983 -15.02763 -14.66087 -14.30599 -13.84891 -13.67124 -13.48338 -13.45204 -12.92587 -12.81304 -12.67879 -12.41043 -12.15793 -11.84969 -11.73379 -11.59621 -11.42333 -11.24360 -11.21381 -10.90381 -10.80703 -10.67015 -10.42366 -10.25083 -10.19794 -9.85774 -9.80004 -9.66069 -9.33203 -8.80699 -8.70651 -8.42378 -8.17966 -6.04053 -4.13772 2.71500 3.26238 3.26854 3.34971 3.40004 3.48259 3.56577 4.21440 4.40638 4.58430 4.65669 4.76161 4.78927 4.91535 4.94041 5.03171 5.07242 5.11230 5.22429 5.23069 5.27863 5.34220 5.41575 5.59917 5.62311 5.66587 5.80569 5.83948 6.14114 6.33766 6.41992 6.47506 6.76038 6.78411 6.87091 6.89293 6.98274 7.00333 7.04228 7.17081 7.35174 7.53104 7.68114 7.98537 8.09600 8.30868 8.38115 8.85700 8.94094 9.52170 10.97531 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.016010 B = 0.003053 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.499313 B = 9169.490848 C =10547.075212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.381 6.381 4 C 0.072 3.928 5 C 0.081 3.919 6 H 0.073 0.927 7 C 0.087 3.913 8 N -0.638 5.638 9 C 0.704 3.296 10 O -0.593 6.593 11 N -0.732 5.732 12 C 0.148 3.852 13 C 0.056 3.944 14 C -0.130 4.130 15 C -0.129 4.129 16 C -0.504 4.504 17 H 0.059 0.941 18 C 0.066 3.934 19 N -0.886 5.886 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.285 1.285 24 C 0.095 3.905 25 C 0.048 3.952 26 O -0.369 6.369 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.048 0.952 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.392 0.608 37 H 0.054 0.946 38 H 0.052 0.948 39 H 0.004 0.996 40 H 0.086 0.914 41 H 0.027 0.973 42 H 0.027 0.973 43 H 0.086 0.914 44 H 0.003 0.997 45 H 0.259 0.741 46 H 0.070 0.930 47 H 0.103 0.897 48 H 0.106 0.894 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.615 -6.306 13.210 20.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.300 6.300 4 C -0.005 4.005 5 C 0.022 3.978 6 H 0.091 0.909 7 C -0.038 4.038 8 N -0.378 5.378 9 C 0.406 3.594 10 O -0.472 6.472 11 N -0.388 5.388 12 C 0.026 3.974 13 C 0.055 3.945 14 C -0.187 4.187 15 C -0.187 4.187 16 C -0.543 4.543 17 H 0.077 0.923 18 C -0.135 4.135 19 N -0.525 5.525 20 Si 0.721 3.279 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.028 4.028 25 C -0.029 4.029 26 O -0.288 6.288 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.109 0.891 35 H 0.096 0.904 36 H 0.229 0.771 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.023 0.977 40 H 0.104 0.896 41 H 0.046 0.954 42 H 0.046 0.954 43 H 0.104 0.896 44 H 0.022 0.978 45 H 0.069 0.931 46 H 0.089 0.911 47 H 0.121 0.879 48 H 0.124 0.876 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.559 -5.501 13.283 20.462 hybrid contribution 0.887 -0.195 -0.911 1.286 sum -13.673 -5.696 12.372 19.299 Atomic orbital electron populations 1.21735 0.93739 1.02151 1.03204 1.22474 0.95678 0.83761 1.00123 1.87938 1.20291 1.26325 1.95435 1.22413 0.82292 0.94436 1.01390 1.22407 0.93257 0.93384 0.88723 0.90899 1.22136 0.94807 0.83610 1.03201 1.47232 1.53196 1.11241 1.26092 1.15931 0.78753 0.85010 0.79748 1.90876 1.66513 1.13241 1.76579 1.45672 1.47499 1.14970 1.30657 1.21627 0.89394 0.96152 0.90261 1.18371 0.93529 0.91718 0.90877 1.21823 0.97762 1.00204 0.98952 1.21820 0.95938 1.00569 1.00375 1.21020 1.24223 0.97310 1.11703 0.92319 1.24877 0.96511 0.94849 0.97297 1.69808 1.43567 1.08144 1.31002 0.86511 0.80928 0.79830 0.80594 1.19740 1.21068 1.21067 1.22115 0.93749 0.99832 0.87125 1.23035 0.94681 0.82270 1.02929 1.87999 1.81821 1.21934 1.37005 0.91833 0.91152 0.91833 0.93290 0.93360 0.91256 0.92101 0.89103 0.90376 0.77063 0.92788 0.92917 0.97737 0.89561 0.95393 0.95374 0.89571 0.97795 0.93069 0.91143 0.87859 0.87623 0.92541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.28 37.16 0.38 -0.69 16 2 C 0.06 0.46 6.66 37.16 0.25 0.71 16 3 O -0.38 -4.25 10.31 -39.65 -0.41 -4.66 16 4 C 0.07 0.69 5.61 37.16 0.21 0.90 16 5 C 0.08 0.91 3.06 -26.58 -0.08 0.83 16 6 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 7 C 0.09 0.99 5.86 -3.53 -0.02 0.97 16 8 N -0.64 -9.11 3.02 -178.00 -0.54 -9.65 16 9 C 0.70 12.92 8.31 -86.92 -0.72 12.19 16 10 O -0.59 -12.98 15.82 5.29 0.08 -12.89 16 11 N -0.73 -13.40 4.87 -65.23 -0.32 -13.71 16 12 C 0.15 3.19 4.51 -4.04 -0.02 3.18 16 13 C 0.06 1.28 0.50 -155.66 -0.08 1.21 16 14 C -0.13 -2.89 8.08 37.16 0.30 -2.59 16 15 C -0.13 -2.89 8.08 37.16 0.30 -2.59 16 16 C -0.50 -13.12 8.01 -34.44 -0.28 -13.40 16 17 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 18 C 0.07 1.72 5.15 -17.82 -0.09 1.62 16 19 N -0.89 -23.37 9.35 55.43 0.52 -22.85 16 20 Si 0.89 20.63 29.54 -169.99 -5.02 15.61 16 21 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 C 0.10 1.15 6.65 -3.53 -0.02 1.13 16 25 C 0.05 0.51 6.99 37.31 0.26 0.77 16 26 O -0.37 -4.46 10.36 -39.65 -0.41 -4.87 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.09 1.00 5.78 -51.92 -0.30 0.70 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.39 6.45 3.72 -40.82 -0.15 6.30 16 37 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.00 0.07 6.86 -51.93 -0.36 -0.28 16 40 H 0.09 2.12 6.07 -51.93 -0.32 1.80 16 41 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.09 2.12 6.07 -51.93 -0.32 1.81 16 44 H 0.00 0.06 6.86 -51.93 -0.36 -0.30 16 45 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 46 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.10 1.36 7.06 -51.93 -0.37 0.99 16 48 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 49 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 381.07 15.07 5.74 5.74 Total: -1.00 -30.52 381.07 -8.43 -38.95 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -8.47 Total: 4.09 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: 0.39 Total: 4.24 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: -0.34 Total: -46.21 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.74 Total: -22.42 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.52 -8.43 -38.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599072891.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.442 kcal (2) G-P(sol) polarization free energy of solvation -30.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds