Wall clock time and date at job start Tue Mar 31 2020 10:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42898 * 109.46819 * 2 1 4 4 C 1.42901 * 113.99907 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47199 * 180.02562 * 4 3 2 6 6 H 1.09005 * 109.51230 * 305.09507 * 5 4 3 7 7 C 1.53298 * 109.51432 * 185.00147 * 5 4 3 8 8 N 1.47147 * 108.38950 * 187.72264 * 7 5 4 9 9 C 1.34778 * 120.98314 * 230.55703 * 8 7 5 10 10 O 1.21587 * 120.00148 * 174.75518 * 9 8 7 11 11 N 1.34772 * 119.99794 * 354.75867 * 9 8 7 12 12 C 1.46507 * 119.99855 * 184.97770 * 11 9 8 13 13 C 1.52994 * 109.46937 * 179.97438 * 12 11 9 14 14 C 1.52998 * 109.47134 * 299.99668 * 13 12 11 15 15 C 1.53001 * 109.47560 * 60.00261 * 13 12 11 16 16 C 1.50710 * 109.47005 * 179.97438 * 13 12 11 17 17 H 1.07997 * 119.99892 * 0.02562 * 16 13 12 18 18 C 1.37875 * 119.99904 * 179.97438 * 16 13 12 19 19 N 1.31511 * 120.00286 * 359.97438 * 18 16 13 20 20 Si 1.86803 * 119.99598 * 180.02562 * 18 16 13 21 21 H 1.48495 * 109.47362 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47012 * 120.00171 * 20 18 16 23 23 H 1.48500 * 109.46878 * 239.99597 * 20 18 16 24 24 C 1.47153 * 118.03339 * 50.52880 * 8 7 5 25 25 C 1.53294 * 108.41731 * 309.44923 * 24 8 7 26 26 O 1.42954 * 109.55858 * 65.22992 * 5 4 3 27 27 H 1.09000 * 109.46985 * 59.99999 * 1 2 3 28 28 H 1.08998 * 109.46716 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47071 * 300.00202 * 1 2 3 30 30 H 1.08992 * 109.47159 * 240.00332 * 2 1 3 31 31 H 1.09000 * 109.46985 * 120.00001 * 2 1 3 32 32 H 1.09001 * 109.47014 * 59.99742 * 4 3 2 33 33 H 1.09003 * 109.47085 * 300.00066 * 4 3 2 34 34 H 1.09007 * 109.68387 * 67.99623 * 7 5 4 35 35 H 1.09002 * 109.68279 * 307.44615 * 7 5 4 36 36 H 0.96993 * 120.00796 * 4.97444 * 11 9 8 37 37 H 1.08999 * 109.46914 * 299.99589 * 12 11 9 38 38 H 1.08993 * 109.47361 * 59.99616 * 12 11 9 39 39 H 1.08998 * 109.47243 * 60.00333 * 14 13 12 40 40 H 1.09003 * 109.47219 * 180.02562 * 14 13 12 41 41 H 1.09002 * 109.47084 * 300.00014 * 14 13 12 42 42 H 1.08999 * 109.47524 * 59.99616 * 15 13 12 43 43 H 1.09003 * 109.47088 * 179.97438 * 15 13 12 44 44 H 1.08998 * 109.46630 * 299.99552 * 15 13 12 45 45 H 0.97001 * 120.00289 * 180.02562 * 19 18 16 46 46 H 1.09001 * 109.68034 * 69.19682 * 24 8 7 47 47 H 1.09005 * 109.67913 * 189.70612 * 24 8 7 48 48 H 1.09004 * 109.50938 * 172.24653 * 25 24 8 49 49 H 1.09000 * 109.51434 * 292.39504 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 6 3.8253 2.9384 0.0012 6 1 3.3488 3.4427 -0.8395 7 6 5.3482 3.0621 -0.1242 8 7 5.7164 4.4741 0.0655 9 6 6.5139 5.1077 -0.8172 10 8 6.7298 6.2981 -0.6959 11 7 7.0719 4.4218 -1.8343 12 6 8.0241 5.0842 -2.7292 13 6 8.5045 4.0904 -3.7886 14 6 9.1881 2.9055 -3.1035 15 6 7.3069 3.5898 -4.5986 16 6 9.4835 4.7720 -4.7096 17 1 9.7380 5.8101 -4.5544 18 6 10.0552 4.0701 -5.7495 19 7 9.7465 2.8056 -5.9375 20 14 11.2692 4.9148 -6.8905 21 1 11.4455 6.3273 -6.4677 22 1 12.5763 4.2126 -6.8300 23 1 10.7505 4.8760 -8.2814 24 6 5.1877 5.1740 1.2470 25 6 3.6726 4.9484 1.3059 26 8 3.4029 3.5460 1.2243 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5137 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 3.8340 0.9765 -0.8891 33 1 3.8333 0.9768 0.8908 34 1 5.6633 2.7302 -1.1135 35 1 5.8302 2.4513 0.6392 36 1 6.8433 3.4896 -1.9738 37 1 7.5372 5.9287 -3.2169 38 1 8.8775 5.4406 -2.1523 39 1 8.4797 2.4126 -2.4377 40 1 9.5308 2.1976 -3.8583 41 1 10.0413 3.2622 -2.5265 42 1 6.8199 4.4340 -5.0867 43 1 7.6493 2.8821 -5.3537 44 1 6.5985 3.0969 -3.9328 45 1 10.1489 2.3116 -6.6689 46 1 5.6535 4.7759 2.1484 47 1 5.3971 6.2407 1.1660 48 1 3.2823 5.3412 2.2448 49 1 3.1955 5.4600 0.4700 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599072891.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:35 Heat of formation + Delta-G solvation = -136.668574 kcal Electronic energy + Delta-G solvation = -27577.630509 eV Core-core repulsion = 23732.505615 eV Total energy + Delta-G solvation = -3845.124893 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.66461 -39.95383 -38.68925 -38.11906 -35.84885 -35.03055 -33.67125 -32.67977 -31.69321 -29.48163 -27.57082 -27.44573 -26.88193 -26.50855 -24.06772 -23.63035 -22.57540 -20.96925 -20.66464 -19.46298 -18.00482 -17.85185 -17.69539 -17.11870 -16.91342 -16.65320 -16.51575 -16.17766 -15.97741 -15.51489 -15.26158 -15.02648 -14.73349 -14.39576 -14.26333 -14.08857 -14.02660 -13.47011 -13.21800 -13.15237 -13.08821 -12.75158 -12.69787 -12.56922 -12.42237 -12.26322 -12.24020 -12.13910 -11.96509 -11.75283 -11.49581 -11.38288 -11.22133 -11.07699 -10.70559 -10.53578 -10.40466 -10.12877 -9.47533 -8.02489 -6.17638 1.41606 1.45502 1.50409 1.56447 2.04916 2.45335 2.56139 2.69348 2.97564 3.21449 3.71249 3.85869 3.90402 4.00250 4.15842 4.20181 4.22680 4.38857 4.40655 4.44600 4.50658 4.51454 4.52438 4.55358 4.69396 4.73226 4.76228 4.88528 4.94023 4.97912 5.04115 5.07381 5.08438 5.19072 5.29766 5.35550 5.36173 5.58258 5.66833 5.67911 5.83126 6.06513 6.14873 6.21164 6.29073 6.43698 6.86281 6.91762 7.49539 7.50260 8.96784 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.016010 B = 0.003053 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.499313 B = 9169.490848 C =10547.075212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.049 3.951 3 O -0.407 6.407 4 C 0.072 3.928 5 C 0.083 3.917 6 H 0.058 0.942 7 C 0.085 3.915 8 N -0.633 5.633 9 C 0.701 3.299 10 O -0.634 6.634 11 N -0.725 5.725 12 C 0.166 3.834 13 C 0.053 3.947 14 C -0.119 4.119 15 C -0.119 4.119 16 C -0.527 4.527 17 H 0.044 0.956 18 C 0.029 3.971 19 N -0.898 5.898 20 Si 0.945 3.055 21 H -0.276 1.276 22 H -0.281 1.281 23 H -0.282 1.282 24 C 0.092 3.908 25 C 0.054 3.946 26 O -0.378 6.378 27 H 0.055 0.945 28 H 0.090 0.910 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.403 0.597 37 H 0.035 0.965 38 H 0.037 0.963 39 H 0.035 0.965 40 H 0.064 0.936 41 H 0.018 0.982 42 H 0.017 0.983 43 H 0.064 0.936 44 H 0.034 0.966 45 H 0.260 0.740 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.134 0.866 49 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.390 -7.820 14.234 22.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.027 4.027 3 O -0.328 6.328 4 C -0.005 4.005 5 C 0.024 3.976 6 H 0.076 0.924 7 C -0.038 4.038 8 N -0.371 5.371 9 C 0.403 3.597 10 O -0.516 6.516 11 N -0.382 5.382 12 C 0.041 3.959 13 C 0.052 3.948 14 C -0.177 4.177 15 C -0.177 4.177 16 C -0.566 4.566 17 H 0.062 0.938 18 C -0.170 4.170 19 N -0.537 5.537 20 Si 0.772 3.228 21 H -0.201 1.201 22 H -0.207 1.207 23 H -0.208 1.208 24 C -0.030 4.030 25 C -0.024 4.024 26 O -0.297 6.297 27 H 0.074 0.926 28 H 0.109 0.891 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.105 0.895 33 H 0.091 0.909 34 H 0.114 0.886 35 H 0.118 0.882 36 H 0.242 0.758 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.054 0.946 40 H 0.083 0.917 41 H 0.037 0.963 42 H 0.036 0.964 43 H 0.083 0.917 44 H 0.053 0.947 45 H 0.070 0.930 46 H 0.107 0.893 47 H 0.107 0.893 48 H 0.152 0.848 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -15.370 -7.064 14.332 22.170 hybrid contribution 1.070 0.261 -1.180 1.614 sum -14.300 -6.802 13.152 20.585 Atomic orbital electron populations 1.21765 0.93262 1.03282 1.02468 1.22670 0.96170 0.82709 1.01105 1.87900 1.21058 1.28137 1.95660 1.22478 0.81963 0.93265 1.02804 1.22411 0.92737 0.94428 0.87987 0.92426 1.22345 0.95261 0.81905 1.04288 1.47280 1.51820 1.12493 1.25521 1.16046 0.79081 0.84559 0.80027 1.90848 1.68044 1.15148 1.77558 1.45371 1.47112 1.15294 1.30445 1.21177 0.89289 0.95359 0.90026 1.18359 0.93382 0.92107 0.90973 1.21661 0.98114 0.99336 0.98608 1.21660 0.96101 0.99725 1.00203 1.21281 1.25402 0.97005 1.12880 0.93772 1.25424 0.97797 0.95458 0.98363 1.69899 1.43932 1.08654 1.31229 0.85716 0.79328 0.78753 0.79051 1.20119 1.20676 1.20759 1.22301 0.94930 0.99042 0.86762 1.23093 0.93389 0.81795 1.04074 1.88000 1.81897 1.22454 1.37332 0.92617 0.89113 0.92496 0.92302 0.92300 0.89540 0.90908 0.88581 0.88218 0.75783 0.94663 0.94463 0.94570 0.91716 0.96252 0.96424 0.91695 0.94713 0.92999 0.89298 0.89264 0.84792 0.93517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 10.28 71.98 0.74 -1.16 16 2 C 0.05 0.71 6.66 71.98 0.48 1.19 16 3 O -0.41 -8.35 10.31 -144.75 -1.49 -9.85 16 4 C 0.07 1.20 5.61 71.98 0.40 1.60 16 5 C 0.08 1.69 3.06 30.69 0.09 1.78 16 6 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 7 C 0.09 1.72 5.86 86.36 0.51 2.23 16 8 N -0.63 -17.08 3.02 -835.33 -2.52 -19.60 16 9 C 0.70 25.26 8.31 179.06 1.49 26.75 16 10 O -0.63 -27.98 15.82 -3.99 -0.06 -28.05 16 11 N -0.73 -25.79 4.87 -478.54 -2.33 -28.12 16 12 C 0.17 7.17 4.51 86.38 0.39 7.55 16 13 C 0.05 2.41 0.50 -52.93 -0.03 2.38 16 14 C -0.12 -5.20 8.08 71.98 0.58 -4.61 16 15 C -0.12 -5.23 8.08 71.98 0.58 -4.65 16 16 C -0.53 -27.75 8.01 25.60 0.21 -27.55 16 17 H 0.04 2.39 7.74 -2.91 -0.02 2.37 16 18 C 0.03 1.53 5.15 84.65 0.44 1.97 16 19 N -0.90 -47.20 9.35 21.45 0.20 -47.00 16 20 Si 0.94 42.39 29.54 68.60 2.03 44.42 16 21 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 22 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 23 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 24 C 0.09 2.09 6.65 86.35 0.57 2.66 16 25 C 0.05 1.04 6.99 72.08 0.50 1.54 16 26 O -0.38 -8.31 10.36 -144.75 -1.50 -9.81 16 27 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.07 1.03 8.14 -2.39 -0.02 1.02 16 34 H 0.10 1.84 5.78 -2.38 -0.01 1.82 16 35 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.40 12.35 3.72 -92.71 -0.34 12.01 16 37 H 0.03 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.04 1.30 6.86 -2.39 -0.02 1.28 16 40 H 0.06 3.12 6.07 -2.39 -0.01 3.11 16 41 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.06 3.16 6.07 -2.39 -0.01 3.14 16 44 H 0.03 1.26 6.86 -2.39 -0.02 1.25 16 45 H 0.26 13.14 8.31 -92.71 -0.77 12.37 16 46 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 47 H 0.09 2.31 7.06 -2.38 -0.02 2.29 16 48 H 0.13 1.81 8.14 -2.38 -0.02 1.79 16 49 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -65.68 381.07 1.85 -63.83 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: 0.58 Total: 22.49 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: 6.96 Total: 11.69 kcal Atomic # 7 Polarization: -90.07 SS G_CDS: -4.65 Total: -94.72 kcal Atomic # 8 Polarization: -44.65 SS G_CDS: -3.05 Total: -47.71 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -65.68 1.85 -63.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599072891.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.843 kcal (2) G-P(sol) polarization free energy of solvation -65.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds