Wall clock time and date at job start Tue Mar 31 2020 11:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38347 * 119.85814 * 2 1 4 4 C 1.37973 * 120.14331 * 180.02562 * 3 2 1 5 5 C 1.50690 * 120.07305 * 179.97438 * 4 3 2 6 6 C 1.39543 * 119.85326 * 0.02562 * 4 3 2 7 7 C 1.47813 * 120.13601 * 179.97438 * 6 4 3 8 8 C 1.32565 * 120.00138 * 62.36508 * 7 6 4 9 9 C 1.50696 * 120.00317 * 7.47880 * 8 7 6 10 10 N 1.46904 * 109.47220 * 125.97052 * 9 8 7 11 11 C 1.46899 * 111.00087 * 292.80658 * 10 9 8 12 12 C 1.53241 * 109.33857 * 172.74179 * 11 10 9 13 13 N 1.47085 * 108.51789 * 53.82744 * 12 11 10 14 14 C 1.36944 * 120.87643 * 128.79027 * 13 12 11 15 15 H 1.07996 * 119.99813 * 208.99668 * 14 13 12 16 16 C 1.38812 * 119.99781 * 29.00751 * 14 13 12 17 17 N 1.31614 * 120.00590 * 11.79089 * 16 14 13 18 18 Si 1.86799 * 119.99635 * 191.79945 * 16 14 13 19 19 H 1.48499 * 109.47268 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47144 * 119.99721 * 18 16 14 21 21 H 1.48507 * 109.46993 * 239.99763 * 18 16 14 22 22 C 1.47077 * 118.24172 * 308.81363 * 13 12 11 23 23 C 1.46896 * 111.00113 * 168.50120 * 10 9 8 24 24 C 1.39535 * 119.71853 * 0.25016 * 6 4 3 25 25 C 1.50699 * 120.06781 * 179.74809 * 24 6 4 26 26 C 1.37973 * 119.85534 * 359.49634 * 24 6 4 27 27 H 1.08996 * 109.47482 * 89.99788 * 1 2 3 28 28 H 1.09009 * 109.46766 * 209.99723 * 1 2 3 29 29 H 1.09002 * 109.47219 * 329.99569 * 1 2 3 30 30 H 1.07993 * 119.92861 * 0.02562 * 3 2 1 31 31 H 1.09005 * 109.47361 * 272.57118 * 5 4 3 32 32 H 1.09000 * 109.47544 * 32.57489 * 5 4 3 33 33 H 1.09006 * 109.47640 * 152.57509 * 5 4 3 34 34 H 1.08002 * 119.99985 * 242.08289 * 7 6 4 35 35 H 1.08002 * 119.99767 * 187.48669 * 8 7 6 36 36 H 1.08998 * 109.47423 * 245.97749 * 9 8 7 37 37 H 1.09007 * 109.46935 * 5.97797 * 9 8 7 38 38 H 1.09003 * 109.49406 * 292.70187 * 11 10 9 39 39 H 1.09000 * 109.49511 * 52.78369 * 11 10 9 40 40 H 1.08998 * 109.63039 * 294.12387 * 12 11 10 41 41 H 1.08999 * 109.63004 * 173.53715 * 12 11 10 42 42 H 0.97001 * 120.00566 * 179.97438 * 17 16 14 43 43 H 1.08996 * 109.62720 * 291.47621 * 22 13 12 44 44 H 1.09000 * 109.78691 * 170.98390 * 22 13 12 45 45 H 1.09006 * 109.49141 * 307.22041 * 23 10 9 46 46 H 1.09001 * 109.49251 * 67.26607 * 23 10 9 47 47 H 1.08996 * 109.47458 * 84.61127 * 25 24 6 48 48 H 1.09004 * 109.46872 * 204.60971 * 25 24 6 49 49 H 1.09001 * 109.47654 * 324.60368 * 25 24 6 50 50 H 1.07995 * 119.92976 * 180.25194 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.1998 0.0000 4 6 3.5754 1.2067 -0.0005 5 6 4.3241 2.5145 -0.0011 6 6 4.2761 -0.0001 -0.0016 7 6 5.7542 0.0000 -0.0028 8 6 6.4178 0.5320 1.0140 9 6 5.6750 0.9838 2.2449 10 7 6.2622 0.3482 3.4321 11 6 6.0270 -1.1018 3.4235 12 6 6.8045 -1.7489 4.5746 13 7 6.4402 -1.0670 5.8259 14 6 6.0378 -1.7802 6.9235 15 1 5.3565 -1.3375 7.6350 16 6 6.5058 -3.0719 7.1217 17 7 7.5041 -3.5288 6.3958 18 14 5.7186 -4.1618 8.4185 19 1 4.6248 -3.4176 9.0929 20 1 5.1649 -5.3789 7.7725 21 1 6.7408 -4.5551 9.4215 22 6 6.5191 0.4011 5.8669 23 6 5.7528 0.9634 4.6649 24 6 3.5754 -1.2067 -0.0074 25 6 4.3241 -2.5146 -0.0144 26 6 2.1957 -1.1999 -0.0016 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8901 0.5138 29 1 -0.3634 0.8900 0.5139 30 1 1.6523 2.1331 0.0004 31 1 4.4642 2.8525 -1.0279 32 1 3.7532 3.2602 0.5522 33 1 5.2965 2.3769 0.4719 34 1 6.2936 -0.4376 -0.8299 35 1 7.4909 0.6419 0.9602 36 1 5.7506 2.0671 2.3379 37 1 4.6262 0.6986 2.1614 38 1 4.9621 -1.2984 3.5482 39 1 6.3658 -1.5198 2.4755 40 1 7.8750 -1.6432 4.3984 41 1 6.5445 -2.8051 4.6441 42 1 7.8314 -4.4313 6.5345 43 1 7.5621 0.7133 5.8148 44 1 6.0724 0.7690 6.7905 45 1 5.8927 2.0434 4.6171 46 1 4.6916 0.7386 4.7720 47 1 4.5888 -2.7872 1.0072 48 1 3.6935 -3.2919 -0.4460 49 1 5.2314 -2.4108 -0.6095 50 1 1.6522 -2.1331 -0.0020 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602454190.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:39 Heat of formation + Delta-G solvation = 60.550603 kcal Electronic energy + Delta-G solvation = -26967.430360 eV Core-core repulsion = 23573.999546 eV Total energy + Delta-G solvation = -3393.430814 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.01839 -38.06550 -35.68629 -33.97978 -33.58068 -32.00709 -30.80898 -29.83552 -28.00836 -27.69708 -26.68386 -26.14068 -24.26319 -22.48708 -22.20393 -20.96283 -20.73623 -19.02250 -18.63487 -16.83869 -16.12826 -15.68188 -15.21914 -15.02262 -14.44580 -14.40842 -14.20343 -13.80451 -13.70990 -13.34542 -13.27236 -13.13935 -13.06687 -13.00996 -12.89345 -12.62927 -12.56509 -12.29896 -11.86304 -11.57210 -11.56151 -11.25678 -11.18349 -11.01154 -10.98839 -10.74953 -10.60504 -10.37946 -10.22982 -9.99853 -9.73604 -9.54321 -9.16093 -8.55196 -8.47984 -8.19130 -7.67567 -6.57471 -5.73385 -3.18399 1.19743 1.39725 2.27763 3.38709 3.46074 3.48294 3.68210 4.50587 4.56707 4.73467 4.73895 4.81594 4.89486 5.17381 5.23388 5.27124 5.40131 5.44015 5.44631 5.48728 5.51513 5.56576 5.58010 5.59978 5.71647 5.72703 5.75115 5.86748 5.92700 5.96488 6.02246 6.09984 6.15985 6.22105 6.27479 6.37626 6.41972 6.44425 6.54157 6.60495 6.64104 6.72059 6.77778 6.82063 6.99515 7.05746 7.33602 7.70729 7.73890 7.78434 7.88788 8.50034 9.26787 9.88947 10.48650 11.34951 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.014446 B = 0.003689 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.783430 B = 7588.445393 C = 8222.277983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.085 4.085 3 C -0.130 4.130 4 C -0.067 4.067 5 C -0.125 4.125 6 C -0.054 4.054 7 C -0.135 4.135 8 C -0.113 4.113 9 C 0.074 3.926 10 N -0.529 5.529 11 C 0.040 3.960 12 C 0.179 3.821 13 N -0.596 5.596 14 C -0.250 4.250 15 H 0.064 0.936 16 C 0.002 3.998 17 N -0.905 5.905 18 Si 0.903 3.097 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.290 1.290 22 C 0.150 3.850 23 C 0.045 3.955 24 C -0.066 4.066 25 C -0.115 4.115 26 C -0.128 4.128 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.118 0.882 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.072 0.928 37 H 0.041 0.959 38 H 0.020 0.980 39 H 0.060 0.940 40 H 0.025 0.975 41 H 0.089 0.911 42 H 0.253 0.747 43 H 0.025 0.975 44 H 0.054 0.946 45 H 0.059 0.941 46 H 0.025 0.975 47 H 0.076 0.924 48 H 0.062 0.938 49 H 0.068 0.932 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.928 8.990 -16.577 20.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.085 4.085 3 C -0.148 4.148 4 C -0.067 4.067 5 C -0.181 4.181 6 C -0.054 4.054 7 C -0.154 4.154 8 C -0.131 4.131 9 C -0.053 4.053 10 N -0.253 5.253 11 C -0.089 4.089 12 C 0.053 3.947 13 N -0.319 5.319 14 C -0.379 4.379 15 H 0.082 0.918 16 C -0.196 4.196 17 N -0.550 5.550 18 Si 0.733 3.267 19 H -0.203 1.203 20 H -0.216 1.216 21 H -0.217 1.217 22 C 0.023 3.977 23 C -0.084 4.084 24 C -0.066 4.066 25 C -0.171 4.171 26 C -0.146 4.146 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.136 0.864 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.090 0.910 37 H 0.059 0.941 38 H 0.039 0.961 39 H 0.078 0.922 40 H 0.043 0.957 41 H 0.107 0.893 42 H 0.063 0.937 43 H 0.043 0.957 44 H 0.073 0.927 45 H 0.078 0.922 46 H 0.043 0.957 47 H 0.094 0.906 48 H 0.081 0.919 49 H 0.087 0.913 50 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.357 8.900 -16.530 20.550 hybrid contribution -1.251 -0.791 0.615 1.603 sum -9.608 8.109 -15.915 20.282 Atomic orbital electron populations 1.20774 0.91466 1.02694 1.01993 1.19875 0.95820 0.93094 0.99690 1.20745 0.93370 0.97330 1.03337 1.19909 0.93340 0.94594 0.98862 1.21023 1.01146 0.93724 1.02216 1.18740 0.93215 0.91938 1.01492 1.21475 0.91713 1.02137 1.00048 1.23226 0.99901 0.96568 0.93448 1.21360 0.95957 0.98550 0.89456 1.61957 1.58094 1.04590 1.00701 1.22866 0.98574 0.86826 1.00624 1.20879 0.95121 0.96889 0.81784 1.44094 1.78407 0.99678 1.09741 1.19245 1.20401 0.96705 1.01581 0.91781 1.25093 0.96509 0.99341 0.98677 1.69990 1.25809 1.16940 1.42289 0.86213 0.78660 0.80619 0.81242 1.20334 1.21624 1.21656 1.20966 0.96790 0.86021 0.93939 1.22609 0.97182 0.97259 0.91388 1.20008 0.93414 0.94786 0.98363 1.20801 0.99811 0.93485 1.03034 1.20819 0.93479 0.97429 1.02838 0.91420 0.91623 0.91710 0.86422 0.91470 0.91838 0.90125 0.86302 0.86269 0.90960 0.94142 0.96120 0.92203 0.95736 0.89339 0.93715 0.95711 0.92749 0.92212 0.95654 0.90553 0.91894 0.91336 0.86318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.00 10.00 36.00 0.36 -0.64 16 2 C -0.08 -0.99 5.89 -104.54 -0.62 -1.60 16 3 C -0.13 -1.52 9.35 -39.64 -0.37 -1.89 16 4 C -0.07 -0.82 4.87 -104.24 -0.51 -1.33 16 5 C -0.12 -1.28 9.21 36.00 0.33 -0.95 16 6 C -0.05 -0.71 4.25 -105.01 -0.45 -1.15 16 7 C -0.14 -1.67 7.73 -37.57 -0.29 -1.96 16 8 C -0.11 -1.50 7.19 -36.22 -0.26 -1.76 16 9 C 0.07 1.12 3.76 -4.98 -0.02 1.10 16 10 N -0.53 -9.80 4.61 -235.76 -1.09 -10.89 16 11 C 0.04 0.83 5.47 -3.70 -0.02 0.81 16 12 C 0.18 4.47 5.38 -3.60 -0.02 4.45 16 13 N -0.60 -15.56 3.03 -172.01 -0.52 -16.08 16 14 C -0.25 -7.03 9.64 -15.06 -0.15 -7.18 16 15 H 0.06 1.78 7.86 -52.49 -0.41 1.36 16 16 C 0.00 0.06 5.05 -17.43 -0.09 -0.03 16 17 N -0.91 -26.64 11.01 55.49 0.61 -26.02 16 18 Si 0.90 22.01 29.57 -169.99 -5.03 16.99 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 C 0.15 3.30 6.69 -3.60 -0.02 3.27 16 23 C 0.05 0.85 5.61 -3.70 -0.02 0.83 16 24 C -0.07 -0.86 5.91 -104.24 -0.62 -1.48 16 25 C -0.11 -1.36 9.53 36.01 0.34 -1.02 16 26 C -0.13 -1.58 9.32 -39.64 -0.37 -1.95 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.55 8.08 -51.92 -0.42 0.13 16 29 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 30 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 33 H 0.08 0.86 3.92 -51.93 -0.20 0.66 16 34 H 0.12 1.29 7.85 -52.49 -0.41 0.88 16 35 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 36 H 0.07 1.00 7.16 -51.93 -0.37 0.63 16 37 H 0.04 0.67 5.72 -51.92 -0.30 0.37 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 1.14 7.13 -51.93 -0.37 0.77 16 40 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.09 2.44 6.13 -51.93 -0.32 2.12 16 42 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.05 1.15 7.96 -51.93 -0.41 0.74 16 45 H 0.06 0.97 7.97 -51.93 -0.41 0.55 16 46 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 48 H 0.06 0.64 8.05 -51.93 -0.42 0.22 16 49 H 0.07 0.75 7.15 -51.93 -0.37 0.38 16 50 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 385.03 15.07 5.80 5.80 Total: -1.00 -30.71 385.03 -11.62 -42.33 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -8.62 Total: 0.36 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: -2.78 Total: -12.49 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: -1.00 Total: -53.00 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.03 Total: 16.99 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.71 -11.62 -42.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602454190.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.883 kcal (2) G-P(sol) polarization free energy of solvation -30.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds