Wall clock time and date at job start Tue Mar 31 2020 11:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38347 * 119.85814 * 2 1 4 4 C 1.37973 * 120.14331 * 180.02562 * 3 2 1 5 5 C 1.50690 * 120.07305 * 179.97438 * 4 3 2 6 6 C 1.39543 * 119.85326 * 0.02562 * 4 3 2 7 7 C 1.47813 * 120.13601 * 179.97438 * 6 4 3 8 8 C 1.32565 * 120.00138 * 62.36508 * 7 6 4 9 9 C 1.50696 * 120.00317 * 7.47880 * 8 7 6 10 10 N 1.46904 * 109.47220 * 125.97052 * 9 8 7 11 11 C 1.46899 * 111.00087 * 292.80658 * 10 9 8 12 12 C 1.53241 * 109.33857 * 172.74179 * 11 10 9 13 13 N 1.47085 * 108.51789 * 53.82744 * 12 11 10 14 14 C 1.36944 * 120.87643 * 128.79027 * 13 12 11 15 15 H 1.07996 * 119.99813 * 208.99668 * 14 13 12 16 16 C 1.38812 * 119.99781 * 29.00751 * 14 13 12 17 17 N 1.31614 * 120.00590 * 11.79089 * 16 14 13 18 18 Si 1.86799 * 119.99635 * 191.79945 * 16 14 13 19 19 H 1.48499 * 109.47268 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47144 * 119.99721 * 18 16 14 21 21 H 1.48507 * 109.46993 * 239.99763 * 18 16 14 22 22 C 1.47077 * 118.24172 * 308.81363 * 13 12 11 23 23 C 1.46896 * 111.00113 * 168.50120 * 10 9 8 24 24 C 1.39535 * 119.71853 * 0.25016 * 6 4 3 25 25 C 1.50699 * 120.06781 * 179.74809 * 24 6 4 26 26 C 1.37973 * 119.85534 * 359.49634 * 24 6 4 27 27 H 1.08996 * 109.47482 * 89.99788 * 1 2 3 28 28 H 1.09009 * 109.46766 * 209.99723 * 1 2 3 29 29 H 1.09002 * 109.47219 * 329.99569 * 1 2 3 30 30 H 1.07993 * 119.92861 * 0.02562 * 3 2 1 31 31 H 1.09005 * 109.47361 * 272.57118 * 5 4 3 32 32 H 1.09000 * 109.47544 * 32.57489 * 5 4 3 33 33 H 1.09006 * 109.47640 * 152.57509 * 5 4 3 34 34 H 1.08002 * 119.99985 * 242.08289 * 7 6 4 35 35 H 1.08002 * 119.99767 * 187.48669 * 8 7 6 36 36 H 1.08998 * 109.47423 * 245.97749 * 9 8 7 37 37 H 1.09007 * 109.46935 * 5.97797 * 9 8 7 38 38 H 1.09003 * 109.49406 * 292.70187 * 11 10 9 39 39 H 1.09000 * 109.49511 * 52.78369 * 11 10 9 40 40 H 1.08998 * 109.63039 * 294.12387 * 12 11 10 41 41 H 1.08999 * 109.63004 * 173.53715 * 12 11 10 42 42 H 0.97001 * 120.00566 * 179.97438 * 17 16 14 43 43 H 1.08996 * 109.62720 * 291.47621 * 22 13 12 44 44 H 1.09000 * 109.78691 * 170.98390 * 22 13 12 45 45 H 1.09006 * 109.49141 * 307.22041 * 23 10 9 46 46 H 1.09001 * 109.49251 * 67.26607 * 23 10 9 47 47 H 1.08996 * 109.47458 * 84.61127 * 25 24 6 48 48 H 1.09004 * 109.46872 * 204.60971 * 25 24 6 49 49 H 1.09001 * 109.47654 * 324.60368 * 25 24 6 50 50 H 1.07995 * 119.92976 * 180.25194 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.1998 0.0000 4 6 3.5754 1.2067 -0.0005 5 6 4.3241 2.5145 -0.0011 6 6 4.2761 -0.0001 -0.0016 7 6 5.7542 0.0000 -0.0028 8 6 6.4178 0.5320 1.0140 9 6 5.6750 0.9838 2.2449 10 7 6.2622 0.3482 3.4321 11 6 6.0270 -1.1018 3.4235 12 6 6.8045 -1.7489 4.5746 13 7 6.4402 -1.0670 5.8259 14 6 6.0378 -1.7802 6.9235 15 1 5.3565 -1.3375 7.6350 16 6 6.5058 -3.0719 7.1217 17 7 7.5041 -3.5288 6.3958 18 14 5.7186 -4.1618 8.4185 19 1 4.6248 -3.4176 9.0929 20 1 5.1649 -5.3789 7.7725 21 1 6.7408 -4.5551 9.4215 22 6 6.5191 0.4011 5.8669 23 6 5.7528 0.9634 4.6649 24 6 3.5754 -1.2067 -0.0074 25 6 4.3241 -2.5146 -0.0144 26 6 2.1957 -1.1999 -0.0016 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8901 0.5138 29 1 -0.3634 0.8900 0.5139 30 1 1.6523 2.1331 0.0004 31 1 4.4642 2.8525 -1.0279 32 1 3.7532 3.2602 0.5522 33 1 5.2965 2.3769 0.4719 34 1 6.2936 -0.4376 -0.8299 35 1 7.4909 0.6419 0.9602 36 1 5.7506 2.0671 2.3379 37 1 4.6262 0.6986 2.1614 38 1 4.9621 -1.2984 3.5482 39 1 6.3658 -1.5198 2.4755 40 1 7.8750 -1.6432 4.3984 41 1 6.5445 -2.8051 4.6441 42 1 7.8314 -4.4313 6.5345 43 1 7.5621 0.7133 5.8148 44 1 6.0724 0.7690 6.7905 45 1 5.8927 2.0434 4.6171 46 1 4.6916 0.7386 4.7720 47 1 4.5888 -2.7872 1.0072 48 1 3.6935 -3.2919 -0.4460 49 1 5.2314 -2.4108 -0.6095 50 1 1.6522 -2.1331 -0.0020 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602454190.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:37 Heat of formation + Delta-G solvation = 45.122861 kcal Electronic energy + Delta-G solvation = -26968.099357 eV Core-core repulsion = 23573.999546 eV Total energy + Delta-G solvation = -3394.099811 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.96097 -39.62671 -37.01263 -35.48665 -34.49324 -33.45124 -32.32243 -31.63604 -29.17949 -28.78639 -27.67210 -27.32227 -25.83503 -24.24156 -23.89404 -21.89507 -21.63235 -20.84141 -19.63119 -18.76548 -17.31266 -16.91029 -16.64489 -16.32682 -16.03195 -15.58848 -15.38351 -15.27060 -15.11869 -14.91321 -14.72919 -14.52032 -13.98393 -13.93855 -13.87180 -13.70806 -13.50875 -13.41579 -13.20050 -12.98557 -12.86627 -12.67845 -12.56496 -12.49013 -12.20914 -12.12495 -12.01786 -11.89391 -11.83941 -11.65721 -11.56114 -11.36666 -10.61424 -10.16555 -9.47326 -9.34235 -8.99615 -8.64712 -7.87470 -5.36616 0.27277 0.48141 1.27654 1.44874 1.45655 1.56672 2.49236 2.77220 3.09720 3.29192 3.68270 3.83435 3.89366 3.96872 3.99437 4.10273 4.30604 4.31969 4.34942 4.39205 4.46960 4.55203 4.58549 4.59029 4.65938 4.71189 4.72383 4.76010 4.76978 4.80114 4.84990 4.87608 4.97097 4.99365 5.03627 5.07892 5.12817 5.19766 5.31643 5.36788 5.40397 5.48420 5.58905 5.64025 5.68203 5.71276 5.75372 5.82827 6.16131 6.21119 6.30089 6.38666 7.13354 7.82661 8.38010 9.19022 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.014446 B = 0.003689 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.783430 B = 7588.445393 C = 8222.277983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.091 4.091 3 C -0.140 4.140 4 C -0.074 4.074 5 C -0.123 4.123 6 C -0.076 4.076 7 C -0.119 4.119 8 C -0.127 4.127 9 C 0.084 3.916 10 N -0.534 5.534 11 C 0.064 3.936 12 C 0.189 3.811 13 N -0.615 5.615 14 C -0.266 4.266 15 H 0.066 0.934 16 C -0.049 4.049 17 N -0.936 5.936 18 Si 0.969 3.031 19 H -0.267 1.267 20 H -0.289 1.289 21 H -0.289 1.289 22 C 0.145 3.855 23 C 0.055 3.945 24 C -0.083 4.083 25 C -0.112 4.112 26 C -0.145 4.145 27 H 0.081 0.919 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.137 0.863 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.135 0.865 35 H 0.126 0.874 36 H 0.091 0.909 37 H 0.029 0.971 38 H 0.004 0.996 39 H 0.073 0.927 40 H -0.001 1.001 41 H 0.056 0.944 42 H 0.250 0.750 43 H 0.019 0.981 44 H 0.060 0.940 45 H 0.096 0.904 46 H 0.015 0.985 47 H 0.056 0.944 48 H 0.076 0.924 49 H 0.075 0.925 50 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.222 10.416 -17.440 22.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.091 4.091 3 C -0.158 4.158 4 C -0.074 4.074 5 C -0.179 4.179 6 C -0.076 4.076 7 C -0.137 4.137 8 C -0.146 4.146 9 C -0.043 4.043 10 N -0.259 5.259 11 C -0.065 4.065 12 C 0.063 3.937 13 N -0.340 5.340 14 C -0.396 4.396 15 H 0.083 0.917 16 C -0.244 4.244 17 N -0.582 5.582 18 Si 0.797 3.203 19 H -0.192 1.192 20 H -0.216 1.216 21 H -0.216 1.216 22 C 0.019 3.981 23 C -0.074 4.074 24 C -0.083 4.083 25 C -0.169 4.169 26 C -0.163 4.163 27 H 0.100 0.900 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.155 0.845 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.152 0.848 35 H 0.144 0.856 36 H 0.109 0.891 37 H 0.047 0.953 38 H 0.022 0.978 39 H 0.092 0.908 40 H 0.017 0.983 41 H 0.074 0.926 42 H 0.060 0.940 43 H 0.037 0.963 44 H 0.079 0.921 45 H 0.114 0.886 46 H 0.033 0.967 47 H 0.074 0.926 48 H 0.095 0.905 49 H 0.094 0.906 50 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.661 10.362 -17.404 22.441 hybrid contribution -0.879 -1.183 0.838 1.695 sum -10.540 9.179 -16.566 21.674 Atomic orbital electron populations 1.20816 0.89588 1.03289 1.03066 1.20248 0.97363 0.92867 0.98620 1.21056 0.93476 0.98199 1.03080 1.20201 0.93860 0.95110 0.98246 1.21042 1.00741 0.92995 1.03145 1.18940 0.93611 0.92429 1.02625 1.21624 0.91611 1.00490 1.00025 1.23127 1.00124 0.98187 0.93119 1.21328 0.95225 0.99258 0.88441 1.61913 1.58702 1.03239 1.02027 1.22439 0.96500 0.88433 0.99158 1.20600 0.94077 0.95696 0.83322 1.44369 1.78546 1.01417 1.09622 1.19567 1.20446 0.97404 1.02149 0.91680 1.25866 0.97082 1.00595 1.00890 1.70155 1.27129 1.17042 1.43859 0.85179 0.77883 0.78580 0.78645 1.19171 1.21567 1.21589 1.21120 0.97030 0.83872 0.96033 1.22477 0.95775 0.99021 0.90149 1.20225 0.94025 0.95189 0.98867 1.20781 1.00428 0.93713 1.01965 1.21065 0.93527 0.98378 1.03328 0.90018 0.91378 0.90778 0.84548 0.90258 0.90744 0.90566 0.84784 0.85604 0.89071 0.95255 0.97799 0.90827 0.98307 0.92582 0.94033 0.96305 0.92140 0.88572 0.96656 0.92570 0.90530 0.90590 0.85407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.75 10.00 71.23 0.71 -1.03 16 2 C -0.09 -1.99 5.89 -19.81 -0.12 -2.10 16 3 C -0.14 -3.02 9.35 22.23 0.21 -2.81 16 4 C -0.07 -1.69 4.87 -19.62 -0.10 -1.78 16 5 C -0.12 -2.22 9.21 71.23 0.66 -1.56 16 6 C -0.08 -1.90 4.25 -20.12 -0.09 -1.99 16 7 C -0.12 -2.76 7.73 23.65 0.18 -2.58 16 8 C -0.13 -3.17 7.19 24.53 0.18 -2.99 16 9 C 0.08 2.39 3.76 85.55 0.32 2.71 16 10 N -0.53 -19.24 4.61 -899.80 -4.15 -23.39 16 11 C 0.06 2.67 5.47 86.38 0.47 3.14 16 12 C 0.19 9.75 5.38 86.35 0.46 10.21 16 13 N -0.62 -32.74 3.03 -698.12 -2.12 -34.86 16 14 C -0.27 -15.18 9.64 84.03 0.81 -14.37 16 15 H 0.07 3.63 7.86 -2.91 -0.02 3.60 16 16 C -0.05 -2.81 5.05 84.86 0.43 -2.38 16 17 N -0.94 -56.60 11.01 21.65 0.24 -56.36 16 18 Si 0.97 45.80 29.57 68.60 2.03 47.83 16 19 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 20 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 21 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 22 C 0.15 6.36 6.69 86.35 0.58 6.94 16 23 C 0.05 1.99 5.61 86.38 0.49 2.48 16 24 C -0.08 -2.13 5.91 -19.61 -0.12 -2.24 16 25 C -0.11 -2.64 9.53 71.24 0.68 -1.96 16 26 C -0.15 -3.48 9.32 22.23 0.21 -3.27 16 27 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.07 1.03 8.08 -2.38 -0.02 1.01 16 29 H 0.07 1.02 8.08 -2.39 -0.02 1.00 16 30 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 31 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 32 H 0.07 1.17 8.10 -2.39 -0.02 1.15 16 33 H 0.08 1.44 3.92 -2.38 -0.01 1.43 16 34 H 0.13 2.66 7.85 -2.91 -0.02 2.64 16 35 H 0.13 2.99 8.06 -2.91 -0.02 2.96 16 36 H 0.09 2.25 7.16 -2.39 -0.02 2.23 16 37 H 0.03 0.92 5.72 -2.38 -0.01 0.91 16 38 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 39 H 0.07 2.83 7.13 -2.39 -0.02 2.81 16 40 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 41 H 0.06 3.23 6.13 -2.39 -0.01 3.21 16 42 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 43 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.06 2.52 7.96 -2.39 -0.02 2.51 16 45 H 0.10 2.81 7.97 -2.38 -0.02 2.79 16 46 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 47 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 48 H 0.08 1.53 8.05 -2.38 -0.02 1.51 16 49 H 0.08 1.61 7.15 -2.39 -0.02 1.60 16 50 H 0.13 2.68 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -66.91 385.03 2.86 -64.05 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 0.89 Total: 18.34 kcal Atomic # 6 Polarization: -21.58 SS G_CDS: 5.97 Total: -15.61 kcal Atomic # 7 Polarization: -108.58 SS G_CDS: -6.03 Total: -114.61 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -66.91 2.86 -64.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602454190.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.172 kcal (2) G-P(sol) polarization free energy of solvation -66.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds