Wall clock time and date at job start Tue Mar 31 2020 11:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38341 * 119.85962 * 2 1 4 4 C 1.37964 * 120.14353 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.07369 * 179.97438 * 4 3 2 6 6 C 1.39532 * 119.85763 * 359.97438 * 4 3 2 7 7 C 1.47812 * 120.14557 * 179.97438 * 6 4 3 8 8 C 1.32567 * 120.00107 * 130.27245 * 7 6 4 9 9 C 1.50703 * 119.99945 * 179.72686 * 8 7 6 10 10 N 1.46894 * 109.46957 * 125.00503 * 9 8 7 11 11 C 1.46901 * 110.99787 * 294.29530 * 10 9 8 12 12 C 1.53245 * 109.33685 * 172.74727 * 11 10 9 13 13 N 1.47076 * 108.52034 * 53.83685 * 12 11 10 14 14 C 1.36939 * 120.88029 * 128.78970 * 13 12 11 15 15 H 1.07996 * 119.99976 * 206.59170 * 14 13 12 16 16 C 1.38810 * 120.00101 * 26.59923 * 14 13 12 17 17 N 1.31614 * 120.00124 * 17.00464 * 16 14 13 18 18 Si 1.86803 * 119.99888 * 197.00846 * 16 14 13 19 19 H 1.48503 * 109.47163 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.46861 * 119.99523 * 18 16 14 21 21 H 1.48491 * 109.47114 * 239.99768 * 18 16 14 22 22 C 1.47080 * 118.23439 * 308.81296 * 13 12 11 23 23 C 1.46902 * 110.99966 * 170.00041 * 10 9 8 24 24 C 1.39535 * 119.71749 * 0.25503 * 6 4 3 25 25 C 1.50696 * 120.07583 * 179.74712 * 24 6 4 26 26 C 1.37983 * 119.85249 * 359.48781 * 24 6 4 27 27 H 1.08998 * 109.46691 * 89.99802 * 1 2 3 28 28 H 1.08994 * 109.47574 * 210.00678 * 1 2 3 29 29 H 1.09002 * 109.46948 * 330.00669 * 1 2 3 30 30 H 1.08008 * 119.92965 * 0.03865 * 3 2 1 31 31 H 1.09004 * 109.47279 * 270.01922 * 5 4 3 32 32 H 1.08998 * 109.47134 * 30.02229 * 5 4 3 33 33 H 1.09002 * 109.47343 * 150.01895 * 5 4 3 34 34 H 1.08000 * 119.99999 * 310.00187 * 7 6 4 35 35 H 1.08000 * 119.99839 * 359.72943 * 8 7 6 36 36 H 1.09004 * 109.46841 * 245.00080 * 9 8 7 37 37 H 1.09003 * 109.47270 * 4.99793 * 9 8 7 38 38 H 1.08998 * 109.49873 * 292.70846 * 11 10 9 39 39 H 1.09000 * 109.48948 * 52.79591 * 11 10 9 40 40 H 1.08993 * 109.62861 * 294.12235 * 12 11 10 41 41 H 1.09003 * 109.62436 * 173.54221 * 12 11 10 42 42 H 0.97001 * 120.00268 * 180.02562 * 17 16 14 43 43 H 1.09004 * 109.62581 * 291.47187 * 22 13 12 44 44 H 1.09007 * 109.78724 * 170.99468 * 22 13 12 45 45 H 1.09003 * 109.49136 * 307.20920 * 23 10 9 46 46 H 1.09007 * 109.49474 * 67.26435 * 23 10 9 47 47 H 1.09006 * 109.47103 * 89.99853 * 25 24 6 48 48 H 1.08998 * 109.47584 * 209.99564 * 25 24 6 49 49 H 1.08997 * 109.47222 * 330.00256 * 25 24 6 50 50 H 1.07996 * 119.92880 * 180.24965 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1958 1.1998 0.0000 4 6 3.5754 1.2066 -0.0005 5 6 4.3242 2.5145 -0.0011 6 6 4.2761 -0.0001 -0.0005 7 6 5.7542 -0.0002 -0.0017 8 6 6.4177 -0.7419 0.8741 9 6 7.9247 -0.7468 0.8689 10 7 8.4201 -0.3926 2.2056 11 6 8.0691 0.9924 2.5472 12 6 8.4408 1.2643 4.0088 13 7 9.8562 0.9154 4.2036 14 6 10.7249 1.8007 4.7841 15 1 11.7788 1.7532 4.5531 16 6 10.2508 2.7590 5.6694 17 7 9.0588 2.6227 6.2105 18 14 11.3046 4.2422 6.0926 19 1 12.5923 4.1606 5.3573 20 1 10.5899 5.4844 5.7037 21 1 11.5698 4.2603 7.5536 22 6 10.3139 -0.4094 3.7580 23 6 9.8686 -0.6155 2.3064 24 6 3.5755 -1.2067 -0.0054 25 6 4.3240 -2.5146 -0.0112 26 6 2.1957 -1.1998 0.0005 27 1 -0.3632 0.0000 -1.0277 28 1 -0.3634 -0.8898 0.5139 29 1 -0.3633 0.8901 0.5137 30 1 1.6523 2.1332 0.0006 31 1 4.5040 2.8297 -1.0289 32 1 3.7327 3.2719 0.5131 33 1 5.2774 2.3877 0.5121 34 1 6.2937 0.6007 -0.7188 35 1 5.8782 -1.3428 1.5912 36 1 8.2839 -1.7401 0.5997 37 1 8.2879 -0.0199 0.1423 38 1 8.6167 1.6768 1.8993 39 1 6.9979 1.1403 2.4108 40 1 7.8196 0.6540 4.6642 41 1 8.2894 2.3199 4.2347 42 1 8.7274 3.2925 6.8289 43 1 9.8728 -1.1807 4.3895 44 1 11.4009 -0.4640 3.8189 45 1 10.1024 -1.6337 1.9953 46 1 10.3911 0.0910 1.6614 47 1 4.5049 -2.8343 1.0151 48 1 3.7319 -3.2699 -0.5279 49 1 5.2767 -2.3857 -0.5247 50 1 1.6522 -2.1331 0.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602454191.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:44 Heat of formation + Delta-G solvation = 54.568249 kcal Electronic energy + Delta-G solvation = -26084.314594 eV Core-core repulsion = 22690.624366 eV Total energy + Delta-G solvation = -3393.690228 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.88322 -38.17426 -35.57681 -34.18298 -33.63387 -32.16853 -30.79964 -29.87853 -28.02685 -27.93284 -26.80197 -26.05097 -24.07060 -22.53664 -22.21652 -20.84317 -20.51090 -19.40957 -18.99428 -16.82766 -16.23691 -15.86329 -15.10372 -14.66869 -14.50059 -14.39788 -14.32195 -13.96418 -13.53631 -13.40347 -13.31516 -13.19572 -13.09056 -13.06437 -12.97960 -12.70982 -12.65613 -12.29717 -11.93611 -11.74770 -11.50485 -11.39706 -11.22615 -11.05827 -11.03019 -10.74273 -10.67803 -10.39264 -10.28794 -10.03282 -9.74306 -9.58608 -9.36037 -8.60497 -8.48687 -8.09653 -7.79213 -6.63719 -5.75423 -3.16518 1.09581 1.34574 2.34471 3.38313 3.46020 3.48208 3.66277 4.45341 4.53123 4.68058 4.69443 4.76726 4.86196 5.13610 5.18122 5.26716 5.35715 5.38382 5.40433 5.41822 5.47970 5.51003 5.54116 5.58957 5.62204 5.69043 5.73564 5.76214 5.82650 5.93500 5.95857 5.97367 6.13353 6.17935 6.22693 6.30873 6.37187 6.40933 6.47629 6.56546 6.57295 6.73108 6.76406 6.82341 6.96402 7.00262 7.28678 7.64673 7.68992 7.74433 7.85370 8.46114 9.23961 9.87567 10.46246 11.33282 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.016935 B = 0.002928 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.954068 B = 9559.695380 C =10563.444735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.087 4.087 3 C -0.127 4.127 4 C -0.068 4.068 5 C -0.116 4.116 6 C -0.053 4.053 7 C -0.136 4.136 8 C -0.107 4.107 9 C 0.079 3.921 10 N -0.530 5.530 11 C 0.037 3.963 12 C 0.179 3.821 13 N -0.596 5.596 14 C -0.250 4.250 15 H 0.066 0.934 16 C 0.000 4.000 17 N -0.902 5.902 18 Si 0.901 3.099 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.290 1.290 22 C 0.149 3.851 23 C 0.044 3.956 24 C -0.071 4.071 25 C -0.116 4.116 26 C -0.127 4.127 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.119 0.881 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.114 0.886 35 H 0.117 0.883 36 H 0.078 0.922 37 H 0.031 0.969 38 H 0.023 0.977 39 H 0.061 0.939 40 H 0.025 0.975 41 H 0.087 0.913 42 H 0.253 0.747 43 H 0.025 0.975 44 H 0.055 0.945 45 H 0.061 0.939 46 H 0.027 0.973 47 H 0.072 0.928 48 H 0.061 0.939 49 H 0.072 0.928 50 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.580 -7.026 -15.775 21.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.087 4.087 3 C -0.145 4.145 4 C -0.068 4.068 5 C -0.173 4.173 6 C -0.053 4.053 7 C -0.154 4.154 8 C -0.125 4.125 9 C -0.049 4.049 10 N -0.254 5.254 11 C -0.092 4.092 12 C 0.053 3.947 13 N -0.319 5.319 14 C -0.380 4.380 15 H 0.084 0.916 16 C -0.198 4.198 17 N -0.547 5.547 18 Si 0.731 3.269 19 H -0.203 1.203 20 H -0.216 1.216 21 H -0.217 1.217 22 C 0.022 3.978 23 C -0.085 4.085 24 C -0.071 4.071 25 C -0.173 4.173 26 C -0.145 4.145 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.137 0.863 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.132 0.868 35 H 0.135 0.865 36 H 0.096 0.904 37 H 0.049 0.951 38 H 0.041 0.959 39 H 0.080 0.920 40 H 0.043 0.957 41 H 0.106 0.894 42 H 0.063 0.937 43 H 0.043 0.957 44 H 0.073 0.927 45 H 0.080 0.920 46 H 0.045 0.955 47 H 0.091 0.909 48 H 0.080 0.920 49 H 0.091 0.909 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -13.847 -7.216 -15.292 21.855 hybrid contribution 0.765 1.361 -0.314 1.593 sum -13.081 -5.855 -15.606 21.189 Atomic orbital electron populations 1.20771 0.91440 1.02650 1.02036 1.19878 0.95823 0.93108 0.99896 1.20792 0.93405 0.97413 1.02884 1.19972 0.93424 0.94723 0.98641 1.20808 1.00633 0.93699 1.02132 1.18796 0.92994 0.92001 1.01523 1.21444 0.91597 1.01273 1.01135 1.23341 0.95428 0.96966 0.96757 1.21196 0.92064 1.00438 0.91200 1.61969 1.14194 1.24976 1.24289 1.22889 0.98850 0.86516 1.00904 1.20852 0.84274 1.01129 0.88464 1.44134 1.06521 1.11401 1.69869 1.19231 0.90720 1.09060 1.18997 0.91642 1.25023 0.97299 1.00818 0.96671 1.70042 1.18791 1.34711 1.31172 0.86239 0.79778 0.83114 0.77758 1.20341 1.21599 1.21726 1.20966 0.97064 0.88738 0.91025 1.22627 0.86997 0.98900 0.99995 1.19967 0.93448 0.94666 0.99064 1.20910 1.00309 0.93565 1.02504 1.20762 0.93360 0.97353 1.03051 0.91422 0.91686 0.91656 0.86294 0.91334 0.91555 0.90857 0.86802 0.86524 0.90399 0.95088 0.95904 0.92017 0.95668 0.89446 0.93706 0.95700 0.92654 0.92045 0.95482 0.90936 0.92046 0.90903 0.86358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.88 10.01 36.01 0.36 -0.52 16 2 C -0.09 -0.93 5.88 -104.54 -0.62 -1.55 16 3 C -0.13 -1.43 9.34 -39.64 -0.37 -1.80 16 4 C -0.07 -0.83 5.91 -104.24 -0.62 -1.45 16 5 C -0.12 -1.28 9.62 36.01 0.35 -0.94 16 6 C -0.05 -0.68 5.64 -105.02 -0.59 -1.27 16 7 C -0.14 -1.70 7.10 -37.57 -0.27 -1.97 16 8 C -0.11 -1.42 6.34 -36.21 -0.23 -1.65 16 9 C 0.08 1.12 5.41 -4.98 -0.03 1.09 16 10 N -0.53 -9.54 4.62 -235.76 -1.09 -10.63 16 11 C 0.04 0.75 5.47 -3.70 -0.02 0.73 16 12 C 0.18 4.43 5.42 -3.60 -0.02 4.41 16 13 N -0.60 -15.39 3.04 -172.02 -0.52 -15.91 16 14 C -0.25 -6.99 9.63 -15.06 -0.15 -7.14 16 15 H 0.07 1.79 7.88 -52.49 -0.41 1.38 16 16 C 0.00 0.01 4.94 -17.43 -0.09 -0.08 16 17 N -0.90 -26.57 11.15 55.49 0.62 -25.95 16 18 Si 0.90 21.90 29.59 -169.99 -5.03 16.87 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 C 0.15 3.22 6.69 -3.61 -0.02 3.19 16 23 C 0.04 0.80 5.62 -3.70 -0.02 0.78 16 24 C -0.07 -0.84 5.84 -104.23 -0.61 -1.45 16 25 C -0.12 -1.15 8.44 36.00 0.30 -0.85 16 26 C -0.13 -1.39 9.34 -39.64 -0.37 -1.76 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 29 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 30 H 0.12 1.13 8.06 -52.48 -0.42 0.70 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 33 H 0.07 0.89 7.08 -51.93 -0.37 0.53 16 34 H 0.11 1.36 7.87 -52.49 -0.41 0.95 16 35 H 0.12 1.63 6.73 -52.49 -0.35 1.28 16 36 H 0.08 0.99 7.97 -51.93 -0.41 0.57 16 37 H 0.03 0.44 7.80 -51.93 -0.40 0.04 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 1.17 7.07 -51.93 -0.37 0.80 16 40 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.09 2.39 6.12 -51.93 -0.32 2.07 16 42 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 43 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.06 1.14 7.96 -51.93 -0.41 0.73 16 45 H 0.06 0.94 7.99 -51.93 -0.41 0.53 16 46 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.07 0.72 7.52 -51.93 -0.39 0.33 16 48 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 49 H 0.07 0.72 6.46 -51.93 -0.34 0.39 16 50 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 390.39 15.07 5.88 5.88 Total: -1.00 -30.57 390.39 -11.94 -42.51 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -8.80 Total: -0.56 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: -3.00 Total: -12.21 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: -0.99 Total: -52.49 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.57 -11.94 -42.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602454191.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.077 kcal (2) G-P(sol) polarization free energy of solvation -30.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds