Wall clock time and date at job start Tue Mar 31 2020 11:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38341 * 119.85962 * 2 1 4 4 C 1.37964 * 120.14353 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.07369 * 179.97438 * 4 3 2 6 6 C 1.39532 * 119.85763 * 359.97438 * 4 3 2 7 7 C 1.47812 * 120.14557 * 179.97438 * 6 4 3 8 8 C 1.32567 * 120.00107 * 130.27245 * 7 6 4 9 9 C 1.50703 * 119.99945 * 179.72686 * 8 7 6 10 10 N 1.46894 * 109.46957 * 125.00503 * 9 8 7 11 11 C 1.46901 * 110.99787 * 294.29530 * 10 9 8 12 12 C 1.53245 * 109.33685 * 172.74727 * 11 10 9 13 13 N 1.47076 * 108.52034 * 53.83685 * 12 11 10 14 14 C 1.36939 * 120.88029 * 128.78970 * 13 12 11 15 15 H 1.07996 * 119.99976 * 206.59170 * 14 13 12 16 16 C 1.38810 * 120.00101 * 26.59923 * 14 13 12 17 17 N 1.31614 * 120.00124 * 17.00464 * 16 14 13 18 18 Si 1.86803 * 119.99888 * 197.00846 * 16 14 13 19 19 H 1.48503 * 109.47163 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.46861 * 119.99523 * 18 16 14 21 21 H 1.48491 * 109.47114 * 239.99768 * 18 16 14 22 22 C 1.47080 * 118.23439 * 308.81296 * 13 12 11 23 23 C 1.46902 * 110.99966 * 170.00041 * 10 9 8 24 24 C 1.39535 * 119.71749 * 0.25503 * 6 4 3 25 25 C 1.50696 * 120.07583 * 179.74712 * 24 6 4 26 26 C 1.37983 * 119.85249 * 359.48781 * 24 6 4 27 27 H 1.08998 * 109.46691 * 89.99802 * 1 2 3 28 28 H 1.08994 * 109.47574 * 210.00678 * 1 2 3 29 29 H 1.09002 * 109.46948 * 330.00669 * 1 2 3 30 30 H 1.08008 * 119.92965 * 0.03865 * 3 2 1 31 31 H 1.09004 * 109.47279 * 270.01922 * 5 4 3 32 32 H 1.08998 * 109.47134 * 30.02229 * 5 4 3 33 33 H 1.09002 * 109.47343 * 150.01895 * 5 4 3 34 34 H 1.08000 * 119.99999 * 310.00187 * 7 6 4 35 35 H 1.08000 * 119.99839 * 359.72943 * 8 7 6 36 36 H 1.09004 * 109.46841 * 245.00080 * 9 8 7 37 37 H 1.09003 * 109.47270 * 4.99793 * 9 8 7 38 38 H 1.08998 * 109.49873 * 292.70846 * 11 10 9 39 39 H 1.09000 * 109.48948 * 52.79591 * 11 10 9 40 40 H 1.08993 * 109.62861 * 294.12235 * 12 11 10 41 41 H 1.09003 * 109.62436 * 173.54221 * 12 11 10 42 42 H 0.97001 * 120.00268 * 180.02562 * 17 16 14 43 43 H 1.09004 * 109.62581 * 291.47187 * 22 13 12 44 44 H 1.09007 * 109.78724 * 170.99468 * 22 13 12 45 45 H 1.09003 * 109.49136 * 307.20920 * 23 10 9 46 46 H 1.09007 * 109.49474 * 67.26435 * 23 10 9 47 47 H 1.09006 * 109.47103 * 89.99853 * 25 24 6 48 48 H 1.08998 * 109.47584 * 209.99564 * 25 24 6 49 49 H 1.08997 * 109.47222 * 330.00256 * 25 24 6 50 50 H 1.07996 * 119.92880 * 180.24965 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1958 1.1998 0.0000 4 6 3.5754 1.2066 -0.0005 5 6 4.3242 2.5145 -0.0011 6 6 4.2761 -0.0001 -0.0005 7 6 5.7542 -0.0002 -0.0017 8 6 6.4177 -0.7419 0.8741 9 6 7.9247 -0.7468 0.8689 10 7 8.4201 -0.3926 2.2056 11 6 8.0691 0.9924 2.5472 12 6 8.4408 1.2643 4.0088 13 7 9.8562 0.9154 4.2036 14 6 10.7249 1.8007 4.7841 15 1 11.7788 1.7532 4.5531 16 6 10.2508 2.7590 5.6694 17 7 9.0588 2.6227 6.2105 18 14 11.3046 4.2422 6.0926 19 1 12.5923 4.1606 5.3573 20 1 10.5899 5.4844 5.7037 21 1 11.5698 4.2603 7.5536 22 6 10.3139 -0.4094 3.7580 23 6 9.8686 -0.6155 2.3064 24 6 3.5755 -1.2067 -0.0054 25 6 4.3240 -2.5146 -0.0112 26 6 2.1957 -1.1998 0.0005 27 1 -0.3632 0.0000 -1.0277 28 1 -0.3634 -0.8898 0.5139 29 1 -0.3633 0.8901 0.5137 30 1 1.6523 2.1332 0.0006 31 1 4.5040 2.8297 -1.0289 32 1 3.7327 3.2719 0.5131 33 1 5.2774 2.3877 0.5121 34 1 6.2937 0.6007 -0.7188 35 1 5.8782 -1.3428 1.5912 36 1 8.2839 -1.7401 0.5997 37 1 8.2879 -0.0199 0.1423 38 1 8.6167 1.6768 1.8993 39 1 6.9979 1.1403 2.4108 40 1 7.8196 0.6540 4.6642 41 1 8.2894 2.3199 4.2347 42 1 8.7274 3.2925 6.8289 43 1 9.8728 -1.1807 4.3895 44 1 11.4009 -0.4640 3.8189 45 1 10.1024 -1.6337 1.9953 46 1 10.3911 0.0910 1.6614 47 1 4.5049 -2.8343 1.0151 48 1 3.7319 -3.2699 -0.5279 49 1 5.2767 -2.3857 -0.5247 50 1 1.6522 -2.1331 0.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602454191.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:43 Heat of formation + Delta-G solvation = 39.511289 kcal Electronic energy + Delta-G solvation = -26084.967513 eV Core-core repulsion = 22690.624366 eV Total energy + Delta-G solvation = -3394.343147 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -40.74372 -39.72041 -36.90463 -35.56801 -34.47572 -33.62892 -32.31664 -31.63496 -29.26349 -28.79079 -27.67777 -27.40165 -25.55773 -24.24908 -23.78873 -21.70938 -21.43568 -20.84699 -20.29181 -18.74010 -17.27107 -17.01362 -16.71548 -16.10571 -15.89824 -15.58802 -15.34357 -15.23982 -15.12065 -14.90542 -14.73345 -14.27794 -14.08359 -13.95821 -13.86447 -13.78942 -13.44969 -13.37328 -13.24989 -13.04558 -12.91954 -12.64446 -12.59532 -12.49735 -12.26276 -12.08009 -12.03665 -11.93679 -11.82177 -11.66919 -11.53044 -11.36829 -10.60467 -10.35348 -9.45474 -9.27849 -8.98886 -8.68967 -7.88116 -5.33092 0.20383 0.48752 1.35968 1.45253 1.46491 1.57530 2.50034 2.79330 3.09986 3.27523 3.68090 3.78521 3.89352 3.96152 3.99018 4.16907 4.27197 4.32634 4.35627 4.40155 4.47332 4.54783 4.59261 4.61911 4.67629 4.70014 4.72917 4.76079 4.78828 4.81491 4.84344 4.86707 4.89475 5.02333 5.03832 5.06141 5.11957 5.19487 5.33826 5.36218 5.40540 5.50059 5.58634 5.61018 5.66102 5.71157 5.77786 5.86707 6.16740 6.20122 6.30187 6.36849 7.12185 7.83041 8.37646 9.18850 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.016935 B = 0.002928 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.954068 B = 9559.695380 C =10563.444735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.091 4.091 3 C -0.140 4.140 4 C -0.083 4.083 5 C -0.114 4.114 6 C -0.081 4.081 7 C -0.120 4.120 8 C -0.117 4.117 9 C 0.085 3.915 10 N -0.540 5.540 11 C 0.059 3.941 12 C 0.188 3.812 13 N -0.615 5.615 14 C -0.263 4.263 15 H 0.069 0.931 16 C -0.054 4.054 17 N -0.936 5.936 18 Si 0.969 3.031 19 H -0.266 1.266 20 H -0.289 1.289 21 H -0.291 1.291 22 C 0.143 3.857 23 C 0.055 3.945 24 C -0.081 4.081 25 C -0.113 4.113 26 C -0.138 4.138 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.134 0.866 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.119 0.881 35 H 0.109 0.891 36 H 0.101 0.899 37 H 0.037 0.963 38 H 0.017 0.983 39 H 0.071 0.929 40 H -0.006 1.006 41 H 0.055 0.945 42 H 0.250 0.750 43 H 0.015 0.985 44 H 0.062 0.938 45 H 0.099 0.901 46 H 0.024 0.976 47 H 0.070 0.930 48 H 0.077 0.923 49 H 0.071 0.929 50 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.932 -7.673 -17.583 23.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.091 4.091 3 C -0.158 4.158 4 C -0.083 4.083 5 C -0.170 4.170 6 C -0.081 4.081 7 C -0.139 4.139 8 C -0.136 4.136 9 C -0.042 4.042 10 N -0.265 5.265 11 C -0.070 4.070 12 C 0.062 3.938 13 N -0.339 5.339 14 C -0.393 4.393 15 H 0.087 0.913 16 C -0.249 4.249 17 N -0.582 5.582 18 Si 0.797 3.203 19 H -0.190 1.190 20 H -0.216 1.216 21 H -0.219 1.219 22 C 0.017 3.983 23 C -0.074 4.074 24 C -0.081 4.081 25 C -0.170 4.170 26 C -0.156 4.156 27 H 0.098 0.902 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.151 0.849 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.137 0.863 35 H 0.127 0.873 36 H 0.119 0.881 37 H 0.055 0.945 38 H 0.035 0.965 39 H 0.089 0.911 40 H 0.012 0.988 41 H 0.073 0.927 42 H 0.059 0.941 43 H 0.033 0.967 44 H 0.081 0.919 45 H 0.117 0.883 46 H 0.043 0.957 47 H 0.089 0.911 48 H 0.096 0.904 49 H 0.090 0.910 50 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -14.187 -7.892 -17.130 23.601 hybrid contribution 0.799 1.496 0.229 1.711 sum -13.388 -6.396 -16.900 22.490 Atomic orbital electron populations 1.20820 0.89377 1.03468 1.03063 1.20278 0.97465 0.92814 0.98534 1.21053 0.93235 0.98493 1.03006 1.20206 0.94175 0.94987 0.98928 1.20799 0.99822 0.93618 1.02805 1.18978 0.93139 0.92754 1.03187 1.21498 0.91790 1.00094 1.00483 1.23156 0.94904 0.98092 0.97404 1.21220 0.92419 1.01668 0.88858 1.61888 1.14292 1.23065 1.27229 1.22470 0.99190 0.88069 0.97299 1.20575 0.83820 0.98452 0.90965 1.44422 1.06524 1.12931 1.70034 1.19575 0.91257 1.09683 1.18750 0.91348 1.25823 0.98630 1.03477 0.96944 1.70206 1.20558 1.35481 1.31982 0.85185 0.78545 0.79378 0.77209 1.19027 1.21618 1.21852 1.21146 0.97527 0.86433 0.93181 1.22488 0.86910 1.00960 0.97061 1.20257 0.94136 0.95065 0.98681 1.20906 1.00342 0.93159 1.02562 1.21070 0.93280 0.98388 1.02822 0.90168 0.90743 0.91011 0.84855 0.90087 0.90861 0.92396 0.86286 0.87316 0.88111 0.94526 0.96482 0.91095 0.98777 0.92705 0.94116 0.96680 0.91943 0.88325 0.95733 0.91135 0.90401 0.91046 0.84486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.48 10.01 71.24 0.71 -0.77 16 2 C -0.09 -1.80 5.88 -19.81 -0.12 -1.92 16 3 C -0.14 -3.01 9.34 22.23 0.21 -2.80 16 4 C -0.08 -2.00 5.91 -19.62 -0.12 -2.11 16 5 C -0.11 -2.46 9.62 71.24 0.69 -1.78 16 6 C -0.08 -2.01 5.64 -20.12 -0.11 -2.12 16 7 C -0.12 -2.90 7.10 23.65 0.17 -2.73 16 8 C -0.12 -2.98 6.34 24.53 0.16 -2.83 16 9 C 0.09 2.24 5.41 85.56 0.46 2.70 16 10 N -0.54 -18.76 4.62 -899.81 -4.16 -22.92 16 11 C 0.06 2.39 5.47 86.38 0.47 2.86 16 12 C 0.19 9.64 5.42 86.35 0.47 10.11 16 13 N -0.61 -32.30 3.04 -698.14 -2.12 -34.43 16 14 C -0.26 -14.84 9.63 84.03 0.81 -14.03 16 15 H 0.07 3.74 7.88 -2.91 -0.02 3.72 16 16 C -0.05 -3.07 4.94 84.86 0.42 -2.65 16 17 N -0.94 -56.89 11.15 21.65 0.24 -56.64 16 18 Si 0.97 45.64 29.59 68.60 2.03 47.67 16 19 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 20 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 21 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 22 C 0.14 6.12 6.69 86.35 0.58 6.70 16 23 C 0.05 1.88 5.62 86.38 0.49 2.36 16 24 C -0.08 -1.84 5.84 -19.61 -0.11 -1.95 16 25 C -0.11 -2.08 8.44 71.23 0.60 -1.48 16 26 C -0.14 -2.80 9.34 22.23 0.21 -2.60 16 27 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.07 0.86 8.08 -2.39 -0.02 0.84 16 29 H 0.07 0.87 8.08 -2.39 -0.02 0.85 16 30 H 0.13 2.35 8.06 -2.91 -0.02 2.33 16 31 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 32 H 0.07 1.44 8.09 -2.39 -0.02 1.42 16 33 H 0.06 1.41 7.08 -2.39 -0.02 1.39 16 34 H 0.12 2.70 7.87 -2.91 -0.02 2.68 16 35 H 0.11 2.97 6.73 -2.91 -0.02 2.95 16 36 H 0.10 2.21 7.97 -2.39 -0.02 2.20 16 37 H 0.04 0.95 7.80 -2.39 -0.02 0.93 16 38 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.07 2.71 7.07 -2.39 -0.02 2.69 16 40 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 41 H 0.05 3.14 6.12 -2.39 -0.01 3.12 16 42 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 43 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.06 2.54 7.96 -2.38 -0.02 2.52 16 45 H 0.10 2.68 7.99 -2.39 -0.02 2.66 16 46 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 47 H 0.07 1.32 7.52 -2.38 -0.02 1.30 16 48 H 0.08 1.14 8.09 -2.39 -0.02 1.12 16 49 H 0.07 1.32 6.46 -2.39 -0.02 1.30 16 50 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -66.99 390.39 2.85 -64.14 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: 0.89 Total: 17.22 kcal Atomic # 6 Polarization: -21.01 SS G_CDS: 5.97 Total: -15.04 kcal Atomic # 7 Polarization: -107.95 SS G_CDS: -6.04 Total: -113.99 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -66.99 2.85 -64.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602454191.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.647 kcal (2) G-P(sol) polarization free energy of solvation -66.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds