Wall clock time and date at job start Tue Mar 31 2020 11:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38375 * 119.85619 * 2 1 4 4 C 1.37951 * 120.14053 * 179.69676 * 3 2 1 5 5 C 1.50695 * 120.07282 * 180.30015 * 4 3 2 6 6 C 1.39555 * 119.85761 * 0.60124 * 4 3 2 7 7 C 1.47810 * 120.14564 * 179.69681 * 6 4 3 8 8 C 1.32562 * 120.00248 * 179.72185 * 7 6 4 9 9 C 1.50702 * 120.00100 * 180.02562 * 8 7 6 10 10 N 1.46898 * 109.47413 * 125.00093 * 9 8 7 11 11 C 1.46903 * 111.00133 * 190.00079 * 10 9 8 12 12 C 1.53230 * 109.33899 * 187.25239 * 11 10 9 13 13 N 1.47080 * 108.52531 * 306.16795 * 12 11 10 14 14 C 1.36931 * 120.88364 * 231.18821 * 13 12 11 15 15 H 1.07994 * 120.00368 * 26.84029 * 14 13 12 16 16 C 1.38812 * 119.99721 * 206.56279 * 14 13 12 17 17 N 1.31619 * 120.00606 * 17.47328 * 16 14 13 18 18 Si 1.86807 * 119.99780 * 197.47555 * 16 14 13 19 19 H 1.48504 * 109.46947 * 94.38387 * 18 16 14 20 20 H 1.48508 * 109.46899 * 214.38152 * 18 16 14 21 21 H 1.48495 * 109.47303 * 334.38014 * 18 16 14 22 22 C 1.47082 * 118.23403 * 51.45931 * 13 12 11 23 23 C 1.46904 * 110.99940 * 314.30418 * 10 9 8 24 24 C 1.39516 * 119.71543 * 359.42013 * 6 4 3 25 25 C 1.37996 * 119.85768 * 0.28311 * 24 6 4 26 26 C 1.50702 * 119.92937 * 179.97438 * 25 24 6 27 27 H 1.08993 * 109.47387 * 269.97910 * 1 2 3 28 28 H 1.09004 * 109.47513 * 29.98209 * 1 2 3 29 29 H 1.09005 * 109.46915 * 149.97864 * 1 2 3 30 30 H 1.07996 * 119.92436 * 0.02562 * 3 2 1 31 31 H 1.09008 * 109.47119 * 270.29735 * 5 4 3 32 32 H 1.08999 * 109.47266 * 30.29841 * 5 4 3 33 33 H 1.09002 * 109.47566 * 150.30418 * 5 4 3 34 34 H 1.08002 * 119.99828 * 359.72530 * 7 6 4 35 35 H 1.07997 * 120.00394 * 0.02562 * 8 7 6 36 36 H 1.09004 * 109.47227 * 4.99756 * 9 8 7 37 37 H 1.09004 * 109.47144 * 245.00502 * 9 8 7 38 38 H 1.09001 * 109.49186 * 67.29185 * 11 10 9 39 39 H 1.08999 * 109.49207 * 307.21639 * 11 10 9 40 40 H 1.09004 * 109.63143 * 186.45915 * 12 11 10 41 41 H 1.09004 * 109.63158 * 65.88032 * 12 11 10 42 42 H 0.96993 * 120.00972 * 179.97438 * 17 16 14 43 43 H 1.09000 * 109.63087 * 68.24805 * 22 13 12 44 44 H 1.08996 * 109.63194 * 188.83501 * 22 13 12 45 45 H 1.09005 * 109.48966 * 292.70358 * 23 10 9 46 46 H 1.08993 * 109.49068 * 52.75434 * 23 10 9 47 47 H 1.08004 * 120.07014 * 180.29336 * 24 6 4 48 48 H 1.08994 * 109.47366 * 89.99588 * 26 25 24 49 49 H 1.09007 * 109.46925 * 209.99839 * 26 25 24 50 50 H 1.08995 * 109.47159 * 329.99322 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1958 1.2001 0.0000 4 6 3.5753 1.2069 0.0063 5 6 4.3239 2.5148 0.0131 6 6 4.2761 0.0001 0.0000 7 6 5.7542 0.0001 0.0000 8 6 6.4170 -1.1479 -0.0005 9 6 7.9240 -1.1479 0.0001 10 7 8.4133 -1.9430 1.1342 11 6 9.8622 -1.7744 1.3092 12 6 10.3613 -2.7520 2.3784 13 7 9.5611 -2.5596 3.5975 14 6 10.1648 -2.3682 4.8115 15 1 11.1520 -1.9331 4.8612 16 6 9.5056 -2.7283 5.9788 17 7 8.4788 -3.5502 5.9282 18 14 10.0758 -2.0463 7.6218 19 1 9.2866 -0.8332 7.9549 20 1 9.8781 -3.0709 8.6785 21 1 11.5156 -1.6928 7.5383 22 6 8.0953 -2.5844 3.4788 23 6 7.6853 -1.6075 2.3653 24 6 3.5755 -1.2064 -0.0004 25 6 2.1956 -1.1996 -0.0005 26 6 1.4373 -2.5019 -0.0015 27 1 -0.3634 -0.0004 1.0276 28 1 -0.3634 0.8901 -0.5136 29 1 -0.3633 -0.8898 -0.5142 30 1 1.6522 2.1333 0.0004 31 1 4.5045 2.8355 -1.0129 32 1 3.7320 3.2696 0.5309 33 1 5.2768 2.3854 0.5263 34 1 6.2942 0.9354 0.0003 35 1 5.8771 -2.0832 -0.0012 36 1 8.2874 -0.1242 0.0903 37 1 8.2877 -1.5816 -0.9315 38 1 10.0741 -0.7524 1.6234 39 1 10.3685 -1.9777 0.3656 40 1 11.4111 -2.5536 2.5945 41 1 10.2450 -3.7754 2.0218 42 1 8.0184 -3.8021 6.7438 43 1 7.7654 -3.5919 3.2258 44 1 7.6462 -2.2751 4.4226 45 1 7.9276 -0.5878 2.6648 46 1 6.6131 -1.6893 2.1874 47 1 4.1121 -2.1437 -0.0005 48 1 1.2544 -2.8167 1.0259 49 1 0.4853 -2.3676 -0.5153 50 1 2.0235 -3.2633 -0.5159 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602455388.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:54 Heat of formation + Delta-G solvation = 43.119218 kcal Electronic energy + Delta-G solvation = -25923.253245 eV Core-core repulsion = 22529.066550 eV Total energy + Delta-G solvation = -3394.186695 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 2.19 seconds Orbital eigenvalues (eV) -40.76230 -39.77884 -36.99910 -35.78300 -34.46872 -33.31954 -32.06846 -31.61299 -30.16275 -29.23150 -27.64598 -26.17624 -25.36302 -24.30819 -23.93936 -23.23327 -20.97061 -20.68682 -19.98260 -18.73176 -17.18368 -17.00115 -16.81717 -16.13603 -15.83232 -15.65946 -15.33147 -15.31905 -15.28526 -14.95784 -14.84618 -14.37153 -14.28910 -14.07358 -13.69860 -13.59248 -13.43434 -13.29264 -13.05736 -12.93970 -12.88418 -12.69530 -12.63916 -12.44974 -12.41719 -12.27515 -12.06479 -11.93828 -11.74162 -11.65234 -11.51647 -11.37547 -10.76364 -10.60369 -9.49817 -9.27116 -8.80129 -8.69902 -7.88716 -5.33638 -0.01768 0.46738 1.45112 1.46446 1.53467 1.56039 2.49533 2.88609 3.08275 3.26679 3.67135 3.70641 3.80018 3.94523 3.99596 4.12869 4.22442 4.27786 4.30256 4.34681 4.40262 4.51275 4.59101 4.63599 4.66093 4.66731 4.71275 4.76214 4.79942 4.81649 4.83250 4.87318 4.88959 4.96338 5.04159 5.06223 5.13775 5.18258 5.27007 5.34584 5.35405 5.44197 5.54289 5.59902 5.64853 5.68554 5.75939 5.89344 6.15517 6.17785 6.27974 6.36067 7.11331 7.82222 8.36943 9.18073 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.014249 B = 0.002925 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.572799 B = 9569.874762 C =10216.701190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.095 4.095 3 C -0.127 4.127 4 C -0.091 4.091 5 C -0.114 4.114 6 C -0.073 4.073 7 C -0.123 4.123 8 C -0.134 4.134 9 C 0.086 3.914 10 N -0.539 5.539 11 C 0.054 3.946 12 C 0.143 3.857 13 N -0.615 5.615 14 C -0.264 4.264 15 H 0.069 0.931 16 C -0.053 4.053 17 N -0.936 5.936 18 Si 0.969 3.031 19 H -0.287 1.287 20 H -0.293 1.293 21 H -0.267 1.267 22 C 0.187 3.813 23 C 0.059 3.941 24 C -0.125 4.125 25 C -0.105 4.105 26 C -0.116 4.116 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.141 0.859 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.126 0.874 35 H 0.113 0.887 36 H 0.039 0.961 37 H 0.099 0.901 38 H 0.024 0.976 39 H 0.098 0.902 40 H 0.063 0.937 41 H 0.017 0.983 42 H 0.250 0.750 43 H -0.003 1.003 44 H 0.054 0.946 45 H 0.013 0.987 46 H 0.074 0.926 47 H 0.122 0.878 48 H 0.071 0.929 49 H 0.086 0.914 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.918 9.984 -16.785 23.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.095 4.095 3 C -0.144 4.144 4 C -0.091 4.091 5 C -0.171 4.171 6 C -0.073 4.073 7 C -0.142 4.142 8 C -0.153 4.153 9 C -0.040 4.040 10 N -0.264 5.264 11 C -0.075 4.075 12 C 0.017 3.983 13 N -0.339 5.339 14 C -0.394 4.394 15 H 0.087 0.913 16 C -0.248 4.248 17 N -0.582 5.582 18 Si 0.797 3.203 19 H -0.214 1.214 20 H -0.220 1.220 21 H -0.191 1.191 22 C 0.061 3.939 23 C -0.070 4.070 24 C -0.143 4.143 25 C -0.105 4.105 26 C -0.172 4.172 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.158 0.842 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.144 0.856 35 H 0.131 0.869 36 H 0.057 0.943 37 H 0.117 0.883 38 H 0.042 0.958 39 H 0.116 0.884 40 H 0.081 0.919 41 H 0.035 0.965 42 H 0.059 0.941 43 H 0.015 0.985 44 H 0.072 0.928 45 H 0.031 0.969 46 H 0.092 0.908 47 H 0.140 0.860 48 H 0.090 0.910 49 H 0.105 0.895 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.049 9.427 -16.762 23.816 hybrid contribution 0.514 0.669 1.404 1.638 sum -13.535 10.096 -15.358 22.825 Atomic orbital electron populations 1.20900 0.89379 1.03835 1.02955 1.20161 0.97477 0.92298 0.99595 1.21102 0.93260 0.98384 1.01698 1.20249 0.94256 0.95100 0.99519 1.20841 1.00030 0.93144 1.03041 1.19022 0.93090 0.93217 1.01974 1.21753 0.91978 0.98363 1.02071 1.23228 0.95365 0.98241 0.98419 1.21244 0.92043 0.96009 0.94735 1.62023 1.04318 1.55800 1.04304 1.22493 0.87809 0.97574 0.99592 1.21150 0.94684 0.96028 0.86401 1.44439 1.01740 1.84093 1.03639 1.19558 1.02110 1.33525 0.84232 0.91348 1.25819 0.99524 0.98109 1.01368 1.70195 1.25102 1.35308 1.27568 0.85226 0.78362 0.77289 0.79425 1.21372 1.22011 1.19102 1.20693 0.83752 0.94240 0.95240 1.22570 0.97523 0.96511 0.90434 1.21349 0.94226 0.97665 1.01033 1.19971 0.93383 0.96278 1.00858 1.20892 1.00470 0.93081 1.02770 0.90675 0.90470 0.90196 0.84155 0.90072 0.90393 0.91715 0.85608 0.86945 0.94282 0.88296 0.95782 0.88355 0.91897 0.96526 0.94089 0.98456 0.92772 0.96855 0.90807 0.86039 0.91048 0.89526 0.91484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.53 9.59 71.23 0.68 -0.85 16 2 C -0.10 -1.91 5.88 -19.81 -0.12 -2.03 16 3 C -0.13 -2.56 9.34 22.23 0.21 -2.35 16 4 C -0.09 -2.05 5.91 -19.62 -0.12 -2.17 16 5 C -0.11 -2.00 9.52 71.23 0.68 -1.32 16 6 C -0.07 -1.87 5.87 -20.12 -0.12 -1.99 16 7 C -0.12 -3.09 8.93 23.65 0.21 -2.88 16 8 C -0.13 -3.58 6.93 24.54 0.17 -3.41 16 9 C 0.09 2.35 5.72 85.56 0.49 2.84 16 10 N -0.54 -19.14 4.77 -898.88 -4.29 -23.43 16 11 C 0.05 1.90 5.58 86.38 0.48 2.38 16 12 C 0.14 6.18 6.69 86.35 0.58 6.76 16 13 N -0.61 -32.55 3.03 -697.26 -2.11 -34.66 16 14 C -0.26 -15.03 9.63 84.03 0.81 -14.22 16 15 H 0.07 3.77 7.88 -2.91 -0.02 3.74 16 16 C -0.05 -3.05 4.93 84.86 0.42 -2.63 16 17 N -0.94 -57.05 11.16 21.65 0.24 -56.81 16 18 Si 0.97 45.89 29.59 68.60 2.03 47.92 16 19 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 20 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 21 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 22 C 0.19 9.66 5.45 86.50 0.47 10.13 16 23 C 0.06 2.43 5.28 86.54 0.46 2.88 16 24 C -0.12 -3.19 9.05 22.52 0.20 -2.98 16 25 C -0.10 -2.34 5.87 -19.90 -0.12 -2.46 16 26 C -0.12 -1.99 9.60 71.24 0.68 -1.30 16 27 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.08 0.82 8.08 -2.39 -0.02 0.80 16 29 H 0.08 0.90 5.93 -2.38 -0.01 0.88 16 30 H 0.14 2.13 8.06 -2.91 -0.02 2.10 16 31 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 32 H 0.08 1.14 8.09 -2.39 -0.02 1.12 16 33 H 0.06 1.20 6.32 -2.39 -0.02 1.18 16 34 H 0.13 2.87 6.18 -2.91 -0.02 2.85 16 35 H 0.11 3.11 6.04 -2.91 -0.02 3.09 16 36 H 0.04 1.02 7.75 -2.39 -0.02 1.00 16 37 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.10 2.75 8.11 -2.39 -0.02 2.73 16 40 H 0.06 2.58 7.95 -2.38 -0.02 2.56 16 41 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 42 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 43 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 44 H 0.05 3.13 6.11 -2.39 -0.01 3.12 16 45 H 0.01 0.57 8.14 -2.38 -0.02 0.55 16 46 H 0.07 2.87 6.43 -2.39 -0.02 2.85 16 47 H 0.12 3.06 6.17 -2.91 -0.02 3.04 16 48 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 49 H 0.09 1.13 5.93 -2.38 -0.01 1.12 16 50 H 0.07 1.11 8.08 -2.39 -0.02 1.09 16 Total: -1.00 -67.77 386.20 2.85 -64.92 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: 0.91 Total: 17.64 kcal Atomic # 6 Polarization: -21.67 SS G_CDS: 6.08 Total: -15.60 kcal Atomic # 7 Polarization: -108.73 SS G_CDS: -6.16 Total: -114.89 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -67.77 2.85 -64.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602455388.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.044 kcal (2) G-P(sol) polarization free energy of solvation -67.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.19 seconds