Wall clock time and date at job start Tue Mar 31 2020 11:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.36835 * 125.02846 * 2 1 4 4 H 0.97003 * 125.06180 * 0.02562 * 3 2 1 5 5 C 1.37691 * 109.87900 * 180.02562 * 3 2 1 6 6 C 1.40709 * 107.14784 * 0.24246 * 5 3 2 7 7 C 1.39590 * 119.92630 * 180.33723 * 6 5 3 8 8 C 1.36657 * 119.76464 * 359.74992 * 7 6 5 9 9 C 1.50705 * 119.73330 * 180.02562 * 8 7 6 10 10 C 1.38784 * 120.53170 * 359.97438 * 8 7 6 11 11 C 1.37794 * 120.66429 * 0.02711 * 10 8 7 12 12 C 1.50696 * 120.11224 * 179.97438 * 11 10 8 13 13 N 1.46904 * 109.46800 * 259.99754 * 12 11 10 14 14 C 1.46899 * 111.00029 * 180.02562 * 13 12 11 15 15 C 1.52997 * 109.47254 * 179.97438 * 14 13 12 16 16 H 1.09008 * 109.47017 * 54.99767 * 15 14 13 17 17 C 1.53001 * 109.47242 * 295.00236 * 15 14 13 18 18 C 1.52994 * 109.47404 * 174.99689 * 15 14 13 19 19 C 1.50701 * 109.47248 * 184.99754 * 18 15 14 20 20 H 1.07997 * 120.00120 * 0.02562 * 19 18 15 21 21 C 1.37881 * 119.99825 * 179.97438 * 19 18 15 22 22 N 1.31509 * 120.00260 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99910 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47203 * 90.00043 * 23 21 19 25 25 H 1.48495 * 109.47415 * 210.00145 * 23 21 19 26 26 H 1.48498 * 109.47390 * 330.00270 * 23 21 19 27 27 C 1.34237 * 125.03559 * 180.66876 * 2 1 3 28 28 C 1.50707 * 126.49650 * 359.35315 * 27 2 1 29 29 H 1.09000 * 109.46837 * 89.98015 * 1 2 3 30 30 H 1.09005 * 109.46924 * 209.97217 * 1 2 3 31 31 H 1.08995 * 109.47191 * 329.97647 * 1 2 3 32 32 H 1.08007 * 120.11902 * 179.77114 * 7 6 5 33 33 H 1.09004 * 109.46886 * 269.97249 * 9 8 7 34 34 H 1.08999 * 109.47423 * 29.97751 * 9 8 7 35 35 H 1.09005 * 109.46667 * 149.98164 * 9 8 7 36 36 H 1.07995 * 119.67080 * 180.02562 * 10 8 7 37 37 H 1.08995 * 109.47455 * 139.99692 * 12 11 10 38 38 H 1.09003 * 109.47449 * 19.98925 * 12 11 10 39 39 H 1.00902 * 111.00190 * 56.03702 * 13 12 11 40 40 H 1.09002 * 109.47043 * 299.99792 * 14 13 12 41 41 H 1.09001 * 109.47354 * 59.99854 * 14 13 12 42 42 H 1.09008 * 109.46731 * 299.99706 * 17 15 14 43 43 H 1.08998 * 109.47430 * 59.99652 * 17 15 14 44 44 H 1.08996 * 109.47271 * 180.02562 * 17 15 14 45 45 H 1.09001 * 109.47698 * 305.00111 * 18 15 14 46 46 H 1.09009 * 109.47010 * 65.00116 * 18 15 14 47 47 H 0.97000 * 120.00592 * 179.97438 * 22 21 19 48 48 H 1.09003 * 109.46730 * 270.85727 * 28 27 2 49 49 H 1.08999 * 109.47050 * 30.85565 * 28 27 2 50 50 H 1.09001 * 109.47207 * 150.85907 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2924 1.1205 0.0000 4 1 1.9621 2.0326 0.0004 5 6 3.6215 0.7607 -0.0006 6 6 3.6706 -0.6456 -0.0066 7 6 4.9039 -1.2994 -0.0015 8 6 6.0589 -0.5690 0.0043 9 6 7.3900 -1.2756 0.0094 10 6 6.0159 0.8182 0.0046 11 6 4.8095 1.4839 -0.0005 12 6 4.7773 2.9905 0.0004 13 7 4.5201 3.4739 1.3636 14 6 4.4812 4.9419 1.4030 15 6 4.2112 5.4066 2.8355 16 1 4.9550 4.9734 3.5043 17 6 2.8143 4.9530 3.2641 18 6 4.2942 6.9329 2.9007 19 6 4.1503 7.3832 4.3316 20 1 4.0138 6.6536 5.1161 21 6 4.1941 8.7265 4.6393 22 7 4.3608 9.6149 3.6841 23 14 4.0165 9.2846 6.4131 24 1 5.3572 9.3495 7.0483 25 1 3.3864 10.6288 6.4484 26 1 3.1646 8.3191 7.1529 27 6 2.2777 -1.0991 -0.0128 28 6 1.8003 -2.5285 -0.0158 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3633 -0.8903 0.5134 31 1 -0.3633 0.8897 0.5142 32 1 4.9451 -2.3787 -0.0024 33 1 7.7067 -1.4466 1.0383 34 1 7.2958 -2.2317 -0.5055 35 1 8.1303 -0.6594 -0.5009 36 1 6.9372 1.3815 0.0088 37 1 3.9856 3.3374 -0.6635 38 1 5.7367 3.3747 -0.3463 39 1 5.2048 3.1124 2.0107 40 1 5.4383 5.3399 1.0658 41 1 3.6872 5.3020 0.7488 42 1 2.0705 5.3862 2.5953 43 1 2.7552 3.8656 3.2177 44 1 2.6218 5.2845 4.2844 45 1 5.2580 7.2614 2.5116 46 1 3.4935 7.3663 2.3012 47 1 4.3912 10.5599 3.9005 48 1 1.6802 -2.8736 1.0111 49 1 0.8436 -2.5910 -0.5344 50 1 2.5319 -3.1548 -0.5263 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602543340.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:31 Heat of formation + Delta-G solvation = 16.587174 kcal Electronic energy + Delta-G solvation = -25588.588694 eV Core-core repulsion = 22193.251483 eV Total energy + Delta-G solvation = -3395.337211 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.42970 -37.91531 -36.80940 -34.55709 -33.08868 -32.10898 -31.79491 -30.63473 -28.79466 -27.02062 -26.29204 -26.17313 -25.44457 -24.05655 -22.18707 -21.17292 -20.68630 -19.17300 -18.81876 -17.63090 -16.35867 -16.02276 -15.42427 -15.16166 -15.01082 -14.65684 -14.27058 -14.12715 -14.05568 -13.63604 -13.44524 -13.09128 -13.01163 -12.80759 -12.79307 -12.73294 -12.40662 -12.37714 -12.16631 -12.09305 -11.88273 -11.54178 -11.38585 -11.22117 -10.98111 -10.88204 -10.77568 -10.71608 -10.30514 -10.23931 -9.72197 -9.44623 -9.14275 -8.96274 -8.33845 -8.16649 -7.99300 -7.50506 -5.98597 -3.99724 1.07196 1.63513 2.57348 3.13864 3.32264 3.38593 3.42108 3.80576 4.44566 4.50910 4.55315 4.72164 4.88034 4.90898 5.00956 5.13495 5.19383 5.25533 5.28128 5.32144 5.37253 5.48037 5.53562 5.56627 5.59215 5.63150 5.68364 5.72952 5.74221 5.85963 5.89243 5.95235 6.03213 6.13346 6.14016 6.36567 6.49208 6.52194 6.65822 6.66778 6.73133 6.84125 6.98045 7.15361 7.16632 7.19791 7.33380 7.57129 7.61956 7.68700 7.83792 8.01482 8.45636 9.06655 9.63736 11.12953 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.016160 B = 0.002609 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.243971 B =10731.435505 C =11770.314606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.079 3.921 3 N -0.581 5.581 4 H 0.417 0.583 5 C 0.122 3.878 6 C -0.102 4.102 7 C -0.076 4.076 8 C -0.115 4.115 9 C -0.106 4.106 10 C -0.097 4.097 11 C -0.083 4.083 12 C 0.098 3.902 13 N -0.684 5.684 14 C 0.063 3.937 15 C -0.082 4.082 16 H 0.053 0.947 17 C -0.122 4.122 18 C 0.028 3.972 19 C -0.512 4.512 20 H 0.056 0.944 21 C 0.055 3.945 22 N -0.897 5.897 23 Si 0.890 3.110 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.274 1.274 27 C -0.183 4.183 28 C -0.073 4.073 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.116 0.884 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.121 0.879 37 H 0.070 0.930 38 H 0.038 0.962 39 H 0.341 0.659 40 H 0.025 0.975 41 H 0.064 0.936 42 H 0.038 0.962 43 H 0.040 0.960 44 H 0.053 0.947 45 H 0.012 0.988 46 H 0.015 0.985 47 H 0.259 0.741 48 H 0.059 0.941 49 H 0.059 0.941 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.341 -24.218 -11.209 26.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.029 4.029 3 N -0.183 5.183 4 H 0.255 0.745 5 C 0.014 3.986 6 C -0.107 4.107 7 C -0.094 4.094 8 C -0.116 4.116 9 C -0.163 4.163 10 C -0.117 4.117 11 C -0.086 4.086 12 C -0.031 4.031 13 N -0.315 5.315 14 C -0.065 4.065 15 C -0.101 4.101 16 H 0.072 0.928 17 C -0.179 4.179 18 C -0.010 4.010 19 C -0.551 4.551 20 H 0.074 0.926 21 C -0.146 4.146 22 N -0.537 5.537 23 Si 0.718 3.282 24 H -0.207 1.207 25 H -0.213 1.213 26 H -0.199 1.199 27 C -0.190 4.190 28 C -0.130 4.130 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.134 0.866 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.139 0.861 37 H 0.088 0.912 38 H 0.057 0.943 39 H 0.159 0.841 40 H 0.044 0.956 41 H 0.083 0.917 42 H 0.057 0.943 43 H 0.059 0.941 44 H 0.072 0.928 45 H 0.031 0.969 46 H 0.034 0.966 47 H 0.069 0.931 48 H 0.078 0.922 49 H 0.078 0.922 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.103 -23.955 -11.300 26.668 hybrid contribution 0.784 1.296 0.878 1.751 sum -2.318 -22.659 -10.423 25.049 Atomic orbital electron populations 1.20461 0.88019 1.03740 1.02890 1.20083 0.93181 0.85654 1.04016 1.41677 1.04023 1.08233 1.64360 0.74518 1.17845 0.84231 0.93239 1.03326 1.19017 0.93016 0.91914 1.06710 1.20008 0.90058 0.98921 1.00459 1.19275 0.95038 0.93409 1.03901 1.20695 0.93853 0.99806 1.01964 1.20591 0.96227 0.93576 1.01333 1.18813 0.90271 0.94585 1.04915 1.20779 1.00113 0.90110 0.92086 1.60608 1.55118 1.10057 1.05669 1.22174 0.99418 0.85342 0.99585 1.21192 0.97036 0.99336 0.92490 0.92805 1.21577 0.96429 0.98755 1.01127 1.19118 0.96907 0.87913 0.97045 1.21236 1.48984 0.91684 0.93177 0.92584 1.25021 0.95527 0.96978 0.97034 1.69961 1.50617 1.01272 1.31865 0.86628 0.78212 0.77994 0.85385 1.20738 1.21292 1.19882 1.19939 0.90568 0.94558 1.13906 1.20050 1.00397 0.91221 1.01331 0.90680 0.89878 0.91156 0.86580 0.91627 0.92007 0.91907 0.86107 0.91201 0.94347 0.84141 0.95642 0.91725 0.94320 0.94079 0.92759 0.96932 0.96623 0.93093 0.92191 0.92191 0.92131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.69 9.98 36.01 0.36 -0.33 16 2 C 0.08 0.85 7.08 -81.77 -0.58 0.27 16 3 N -0.58 -6.90 6.07 -6.95 -0.04 -6.94 16 4 H 0.42 4.54 8.96 -40.82 -0.37 4.18 16 5 C 0.12 1.62 6.98 -83.99 -0.59 1.03 16 6 C -0.10 -1.32 6.35 -105.14 -0.67 -1.99 16 7 C -0.08 -0.88 9.67 -39.65 -0.38 -1.27 16 8 C -0.12 -1.28 5.85 -104.99 -0.61 -1.90 16 9 C -0.11 -0.89 9.99 36.01 0.36 -0.53 16 10 C -0.10 -1.15 9.29 -39.54 -0.37 -1.52 16 11 C -0.08 -1.07 5.41 -104.47 -0.56 -1.63 16 12 C 0.10 1.26 5.83 -4.98 -0.03 1.23 16 13 N -0.68 -9.98 5.94 -115.06 -0.68 -10.67 16 14 C 0.06 1.08 5.07 -3.83 -0.02 1.06 16 15 C -0.08 -1.67 2.48 -90.62 -0.22 -1.89 16 16 H 0.05 1.12 8.14 -51.92 -0.42 0.70 16 17 C -0.12 -2.37 8.89 37.16 0.33 -2.04 16 18 C 0.03 0.71 4.45 -27.89 -0.12 0.59 16 19 C -0.51 -14.43 8.41 -34.44 -0.29 -14.72 16 20 H 0.06 1.55 7.06 -52.49 -0.37 1.17 16 21 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 22 N -0.90 -27.10 13.29 55.43 0.74 -26.37 16 23 Si 0.89 21.83 29.54 -169.99 -5.02 16.80 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 27 C -0.18 -2.08 6.31 -102.71 -0.65 -2.73 16 28 C -0.07 -0.61 9.95 36.01 0.36 -0.25 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.51 7.68 -51.93 -0.40 0.11 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.12 1.13 8.06 -52.48 -0.42 0.70 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.44 8.07 -51.93 -0.42 0.02 16 35 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 36 H 0.12 1.26 8.03 -52.49 -0.42 0.83 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.04 0.48 8.00 -51.93 -0.42 0.06 16 39 H 0.34 5.00 8.72 -39.29 -0.34 4.66 16 40 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.04 0.74 8.14 -51.92 -0.42 0.32 16 43 H 0.04 0.73 7.75 -51.93 -0.40 0.32 16 44 H 0.05 1.14 6.95 -51.93 -0.36 0.78 16 45 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 47 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 48 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.06 0.41 7.72 -51.93 -0.40 0.01 16 50 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 404.71 15.07 6.10 6.10 Total: -1.00 -31.33 404.71 -11.65 -42.97 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -8.95 Total: 3.21 kcal Atomic # 6 Polarization: -21.33 SS G_CDS: -3.79 Total: -25.12 kcal Atomic # 7 Polarization: -43.98 SS G_CDS: 0.01 Total: -43.97 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -31.33 -11.65 -42.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602543340.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.561 kcal (2) G-P(sol) polarization free energy of solvation -31.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds