Wall clock time and date at job start Tue Mar 31 2020 11:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.36835 * 125.02846 * 2 1 4 4 H 0.97003 * 125.06180 * 0.02562 * 3 2 1 5 5 C 1.37691 * 109.87900 * 180.02562 * 3 2 1 6 6 C 1.40709 * 107.14784 * 0.24246 * 5 3 2 7 7 C 1.39590 * 119.92630 * 180.33723 * 6 5 3 8 8 C 1.36657 * 119.76464 * 359.74992 * 7 6 5 9 9 C 1.50705 * 119.73330 * 180.02562 * 8 7 6 10 10 C 1.38784 * 120.53170 * 359.97438 * 8 7 6 11 11 C 1.37794 * 120.66429 * 0.02711 * 10 8 7 12 12 C 1.50696 * 120.11224 * 179.97438 * 11 10 8 13 13 N 1.46904 * 109.46800 * 259.99754 * 12 11 10 14 14 C 1.46899 * 111.00029 * 180.02562 * 13 12 11 15 15 C 1.52997 * 109.47254 * 179.97438 * 14 13 12 16 16 H 1.09008 * 109.47017 * 54.99767 * 15 14 13 17 17 C 1.53001 * 109.47242 * 295.00236 * 15 14 13 18 18 C 1.52994 * 109.47404 * 174.99689 * 15 14 13 19 19 C 1.50701 * 109.47248 * 184.99754 * 18 15 14 20 20 H 1.07997 * 120.00120 * 0.02562 * 19 18 15 21 21 C 1.37881 * 119.99825 * 179.97438 * 19 18 15 22 22 N 1.31509 * 120.00260 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99910 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47203 * 90.00043 * 23 21 19 25 25 H 1.48495 * 109.47415 * 210.00145 * 23 21 19 26 26 H 1.48498 * 109.47390 * 330.00270 * 23 21 19 27 27 C 1.34237 * 125.03559 * 180.66876 * 2 1 3 28 28 C 1.50707 * 126.49650 * 359.35315 * 27 2 1 29 29 H 1.09000 * 109.46837 * 89.98015 * 1 2 3 30 30 H 1.09005 * 109.46924 * 209.97217 * 1 2 3 31 31 H 1.08995 * 109.47191 * 329.97647 * 1 2 3 32 32 H 1.08007 * 120.11902 * 179.77114 * 7 6 5 33 33 H 1.09004 * 109.46886 * 269.97249 * 9 8 7 34 34 H 1.08999 * 109.47423 * 29.97751 * 9 8 7 35 35 H 1.09005 * 109.46667 * 149.98164 * 9 8 7 36 36 H 1.07995 * 119.67080 * 180.02562 * 10 8 7 37 37 H 1.08995 * 109.47455 * 139.99692 * 12 11 10 38 38 H 1.09003 * 109.47449 * 19.98925 * 12 11 10 39 39 H 1.00902 * 111.00190 * 56.03702 * 13 12 11 40 40 H 1.09002 * 109.47043 * 299.99792 * 14 13 12 41 41 H 1.09001 * 109.47354 * 59.99854 * 14 13 12 42 42 H 1.09008 * 109.46731 * 299.99706 * 17 15 14 43 43 H 1.08998 * 109.47430 * 59.99652 * 17 15 14 44 44 H 1.08996 * 109.47271 * 180.02562 * 17 15 14 45 45 H 1.09001 * 109.47698 * 305.00111 * 18 15 14 46 46 H 1.09009 * 109.47010 * 65.00116 * 18 15 14 47 47 H 0.97000 * 120.00592 * 179.97438 * 22 21 19 48 48 H 1.09003 * 109.46730 * 270.85727 * 28 27 2 49 49 H 1.08999 * 109.47050 * 30.85565 * 28 27 2 50 50 H 1.09001 * 109.47207 * 150.85907 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2924 1.1205 0.0000 4 1 1.9621 2.0326 0.0004 5 6 3.6215 0.7607 -0.0006 6 6 3.6706 -0.6456 -0.0066 7 6 4.9039 -1.2994 -0.0015 8 6 6.0589 -0.5690 0.0043 9 6 7.3900 -1.2756 0.0094 10 6 6.0159 0.8182 0.0046 11 6 4.8095 1.4839 -0.0005 12 6 4.7773 2.9905 0.0004 13 7 4.5201 3.4739 1.3636 14 6 4.4812 4.9419 1.4030 15 6 4.2112 5.4066 2.8355 16 1 4.9550 4.9734 3.5043 17 6 2.8143 4.9530 3.2641 18 6 4.2942 6.9329 2.9007 19 6 4.1503 7.3832 4.3316 20 1 4.0138 6.6536 5.1161 21 6 4.1941 8.7265 4.6393 22 7 4.3608 9.6149 3.6841 23 14 4.0165 9.2846 6.4131 24 1 5.3572 9.3495 7.0483 25 1 3.3864 10.6288 6.4484 26 1 3.1646 8.3191 7.1529 27 6 2.2777 -1.0991 -0.0128 28 6 1.8003 -2.5285 -0.0158 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3633 -0.8903 0.5134 31 1 -0.3633 0.8897 0.5142 32 1 4.9451 -2.3787 -0.0024 33 1 7.7067 -1.4466 1.0383 34 1 7.2958 -2.2317 -0.5055 35 1 8.1303 -0.6594 -0.5009 36 1 6.9372 1.3815 0.0088 37 1 3.9856 3.3374 -0.6635 38 1 5.7367 3.3747 -0.3463 39 1 5.2048 3.1124 2.0107 40 1 5.4383 5.3399 1.0658 41 1 3.6872 5.3020 0.7488 42 1 2.0705 5.3862 2.5953 43 1 2.7552 3.8656 3.2177 44 1 2.6218 5.2845 4.2844 45 1 5.2580 7.2614 2.5116 46 1 3.4935 7.3663 2.3012 47 1 4.3912 10.5599 3.9005 48 1 1.6802 -2.8736 1.0111 49 1 0.8436 -2.5910 -0.5344 50 1 2.5319 -3.1548 -0.5263 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602543340.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:30 Heat of formation + Delta-G solvation = 0.327601 kcal Electronic energy + Delta-G solvation = -25589.293762 eV Core-core repulsion = 22193.251483 eV Total energy + Delta-G solvation = -3396.042279 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.27392 -38.89181 -38.13155 -36.00256 -34.47725 -33.55182 -32.59633 -31.71098 -29.48985 -28.90995 -27.52517 -26.93578 -26.44373 -25.54486 -23.86411 -22.01167 -21.64563 -20.73781 -19.69889 -18.56369 -18.47141 -16.89126 -16.64296 -16.50288 -16.04487 -16.01001 -15.66096 -15.44818 -14.90332 -14.62710 -14.39442 -14.32164 -14.04907 -13.83311 -13.61419 -13.58250 -13.50801 -13.38381 -13.29937 -13.08384 -12.97912 -12.80754 -12.75609 -12.73875 -12.52621 -12.24458 -12.05553 -12.01454 -11.78104 -11.60629 -11.51620 -11.12557 -10.94705 -10.55216 -10.27357 -9.39209 -8.86044 -8.35239 -8.19302 -6.28458 0.18739 0.74623 1.38765 1.39508 1.50655 1.74875 2.31850 2.40411 2.87608 3.14089 3.37764 3.74651 3.80288 3.98710 4.08693 4.14866 4.27257 4.33591 4.38438 4.39078 4.48491 4.50571 4.58463 4.62862 4.70536 4.76923 4.84273 4.90148 4.92172 4.96843 4.98313 4.99126 5.01381 5.09108 5.14112 5.23714 5.24638 5.29867 5.33291 5.42323 5.46813 5.53178 5.60566 5.78114 5.81218 5.86677 5.90332 5.99339 6.04053 6.29085 6.34114 6.40156 6.74382 6.87394 7.39864 8.92676 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.016160 B = 0.002609 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.243971 B =10731.435505 C =11770.314606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.073 3.927 3 N -0.585 5.585 4 H 0.418 0.582 5 C 0.098 3.902 6 C -0.125 4.125 7 C -0.084 4.084 8 C -0.121 4.121 9 C -0.104 4.104 10 C -0.105 4.105 11 C -0.096 4.096 12 C 0.105 3.895 13 N -0.678 5.678 14 C 0.078 3.922 15 C -0.073 4.073 16 H 0.051 0.949 17 C -0.110 4.110 18 C 0.033 3.967 19 C -0.529 4.529 20 H 0.059 0.941 21 C -0.002 4.002 22 N -0.935 5.935 23 Si 0.960 3.040 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.264 1.264 27 C -0.200 4.200 28 C -0.070 4.070 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.072 0.928 32 H 0.132 0.868 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.132 0.868 37 H 0.070 0.930 38 H 0.044 0.956 39 H 0.342 0.658 40 H 0.020 0.980 41 H 0.064 0.936 42 H 0.037 0.963 43 H 0.061 0.939 44 H 0.036 0.964 45 H -0.014 1.014 46 H -0.009 1.009 47 H 0.262 0.738 48 H 0.064 0.936 49 H 0.076 0.924 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.742 -26.023 -10.725 28.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.036 4.036 3 N -0.188 5.188 4 H 0.256 0.744 5 C -0.010 4.010 6 C -0.130 4.130 7 C -0.103 4.103 8 C -0.122 4.122 9 C -0.161 4.161 10 C -0.125 4.125 11 C -0.099 4.099 12 C -0.024 4.024 13 N -0.309 5.309 14 C -0.051 4.051 15 C -0.092 4.092 16 H 0.069 0.931 17 C -0.167 4.167 18 C -0.004 4.004 19 C -0.567 4.567 20 H 0.077 0.923 21 C -0.199 4.199 22 N -0.576 5.576 23 Si 0.785 3.215 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.188 1.188 27 C -0.207 4.207 28 C -0.127 4.127 29 H 0.107 0.893 30 H 0.115 0.885 31 H 0.091 0.909 32 H 0.150 0.850 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.150 0.850 37 H 0.089 0.911 38 H 0.062 0.938 39 H 0.160 0.840 40 H 0.038 0.962 41 H 0.082 0.918 42 H 0.056 0.944 43 H 0.080 0.920 44 H 0.055 0.945 45 H 0.005 0.995 46 H 0.009 0.991 47 H 0.071 0.929 48 H 0.082 0.918 49 H 0.095 0.905 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.505 -25.785 -10.819 28.181 hybrid contribution 0.922 1.819 0.675 2.148 sum -2.583 -23.966 -10.144 26.152 Atomic orbital electron populations 1.20560 0.85662 1.04569 1.04010 1.20666 0.94692 0.85169 1.03031 1.41782 1.03840 1.08680 1.64462 0.74381 1.18093 0.84851 0.93809 1.04231 1.19441 0.94277 0.92166 1.07077 1.20290 0.89906 0.99892 1.00176 1.19610 0.96220 0.93326 1.03023 1.20727 0.92454 1.00255 1.02616 1.20832 0.96361 0.94226 1.01050 1.18839 0.90739 0.94232 1.06056 1.20727 1.00375 0.90479 0.90787 1.60534 1.55363 1.08040 1.06960 1.21866 0.99098 0.87045 0.97093 1.20995 0.97754 0.95640 0.94768 0.93073 1.21451 0.95519 0.99927 0.99843 1.19002 0.94391 0.91507 0.95514 1.21631 1.48652 0.92123 0.94322 0.92251 1.25940 0.95122 0.97178 1.01672 1.70092 1.51602 1.01664 1.34241 0.85519 0.78549 0.77623 0.79821 1.19898 1.20836 1.18812 1.20365 0.90059 0.96134 1.14174 1.20093 1.01235 0.89478 1.01882 0.89317 0.88476 0.90860 0.84972 0.91059 0.90749 0.91130 0.84997 0.91147 0.93774 0.83999 0.96169 0.91782 0.94416 0.91998 0.94518 0.99549 0.99069 0.92911 0.91774 0.90513 0.91826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.16 9.98 71.24 0.71 -0.45 16 2 C 0.07 1.49 7.08 40.87 0.29 1.78 16 3 N -0.59 -13.60 6.07 -175.91 -1.07 -14.67 16 4 H 0.42 8.97 8.96 -92.71 -0.83 8.14 16 5 C 0.10 2.58 6.98 39.03 0.27 2.85 16 6 C -0.12 -3.17 6.35 -20.20 -0.13 -3.29 16 7 C -0.08 -1.88 9.67 22.23 0.22 -1.66 16 8 C -0.12 -2.55 5.85 -20.10 -0.12 -2.67 16 9 C -0.10 -1.54 9.99 71.24 0.71 -0.83 16 10 C -0.10 -2.40 9.29 22.30 0.21 -2.19 16 11 C -0.10 -2.41 5.41 -19.77 -0.11 -2.52 16 12 C 0.10 2.64 5.83 85.55 0.50 3.14 16 13 N -0.68 -19.34 5.94 -517.93 -3.08 -22.42 16 14 C 0.08 2.66 5.07 86.30 0.44 3.10 16 15 C -0.07 -2.98 2.48 -10.80 -0.03 -3.01 16 16 H 0.05 2.12 8.14 -2.38 -0.02 2.11 16 17 C -0.11 -4.24 8.89 71.98 0.64 -3.60 16 18 C 0.03 1.77 4.45 29.85 0.13 1.90 16 19 C -0.53 -30.16 8.41 25.60 0.22 -29.95 16 20 H 0.06 3.27 7.06 -2.91 -0.02 3.25 16 21 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 22 N -0.94 -57.44 13.29 21.45 0.28 -57.16 16 23 Si 0.96 44.79 29.54 68.60 2.03 46.81 16 24 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 25 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 26 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 27 C -0.20 -4.35 6.31 -18.62 -0.12 -4.47 16 28 C -0.07 -1.04 9.95 71.24 0.71 -0.33 16 29 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.10 0.96 7.68 -2.38 -0.02 0.94 16 31 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.13 2.38 8.06 -2.91 -0.02 2.36 16 33 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.07 0.91 8.07 -2.39 -0.02 0.89 16 35 H 0.07 0.93 8.08 -2.38 -0.02 0.91 16 36 H 0.13 2.60 8.03 -2.91 -0.02 2.58 16 37 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.04 1.06 8.00 -2.39 -0.02 1.04 16 39 H 0.34 9.75 8.72 -89.69 -0.78 8.97 16 40 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 43 H 0.06 2.12 7.75 -2.39 -0.02 2.10 16 44 H 0.04 1.52 6.95 -2.39 -0.02 1.50 16 45 H -0.01 -0.80 8.14 -2.39 -0.02 -0.81 16 46 H -0.01 -0.52 8.14 -2.38 -0.02 -0.54 16 47 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 48 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 49 H 0.08 0.86 7.72 -2.39 -0.02 0.85 16 50 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -67.57 404.71 2.48 -65.09 By element: Atomic # 1 Polarization: 24.90 SS G_CDS: -0.69 Total: 24.20 kcal Atomic # 6 Polarization: -46.86 SS G_CDS: 5.01 Total: -41.86 kcal Atomic # 7 Polarization: -90.39 SS G_CDS: -3.86 Total: -94.25 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -67.57 2.48 -65.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602543340.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.415 kcal (2) G-P(sol) polarization free energy of solvation -67.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds