Wall clock time and date at job start Tue Mar 31 2020 11:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.47629 * 2 1 4 4 C 1.37795 * 120.10499 * 265.66907 * 3 2 1 5 5 C 1.38796 * 120.65938 * 179.89157 * 4 3 2 6 6 C 1.36656 * 120.53155 * 359.63340 * 5 4 3 7 7 C 1.39591 * 119.76254 * 0.02562 * 6 5 4 8 8 C 1.46493 * 134.03543 * 179.97438 * 7 6 5 9 9 C 1.50703 * 126.50121 * 0.02562 * 8 7 6 10 10 C 1.53000 * 109.46912 * 84.71465 * 9 8 7 11 11 N 1.46901 * 109.46769 * 180.02562 * 10 9 8 12 12 C 1.46906 * 110.99793 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.46807 * 179.97438 * 12 11 10 14 14 H 1.08997 * 109.47214 * 304.99604 * 13 12 11 15 15 C 1.52999 * 109.47481 * 65.00013 * 13 12 11 16 16 C 1.53005 * 109.46588 * 184.99975 * 13 12 11 17 17 C 1.50706 * 109.46663 * 175.00010 * 16 13 12 18 18 H 1.07998 * 120.00165 * 359.97438 * 17 16 13 19 19 C 1.37880 * 119.99794 * 180.02562 * 17 16 13 20 20 N 1.31520 * 119.99978 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99983 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46846 * 359.97438 * 21 19 17 23 23 H 1.48508 * 109.47064 * 119.99675 * 21 19 17 24 24 H 1.48498 * 109.46906 * 239.99614 * 21 19 17 25 25 C 1.34234 * 106.99711 * 179.76078 * 8 7 6 26 26 N 1.36825 * 109.94080 * 0.23981 * 25 8 7 27 27 H 0.97001 * 125.06569 * 179.97438 * 26 25 8 28 28 C 1.37686 * 109.87612 * 0.02562 * 26 25 8 29 29 H 1.08996 * 109.46714 * 300.00390 * 1 2 3 30 30 H 1.08997 * 109.46757 * 59.99823 * 1 2 3 31 31 H 1.08991 * 109.47434 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47024 * 239.99934 * 2 1 3 33 33 H 1.08997 * 109.46757 * 120.00177 * 2 1 3 34 34 H 1.07996 * 119.67371 * 359.52011 * 4 3 2 35 35 H 1.08001 * 119.73269 * 179.61488 * 5 4 3 36 36 H 1.07997 * 120.12063 * 179.97438 * 6 5 4 37 37 H 1.09002 * 109.47152 * 324.71236 * 9 8 7 38 38 H 1.09001 * 109.46980 * 204.71337 * 9 8 7 39 39 H 1.09001 * 109.47194 * 299.99742 * 10 9 8 40 40 H 1.08992 * 109.47399 * 59.99914 * 10 9 8 41 41 H 1.00899 * 111.00283 * 56.04461 * 11 10 9 42 42 H 1.09006 * 109.46661 * 299.99622 * 12 11 10 43 43 H 1.08995 * 109.47087 * 60.00099 * 12 11 10 44 44 H 1.08997 * 109.47230 * 59.99602 * 15 13 12 45 45 H 1.09002 * 109.47071 * 179.97438 * 15 13 12 46 46 H 1.09002 * 109.46733 * 299.99725 * 15 13 12 47 47 H 1.08993 * 109.47330 * 294.99466 * 16 13 12 48 48 H 1.08994 * 109.47132 * 55.00171 * 16 13 12 49 49 H 0.96999 * 120.00038 * 180.02562 * 20 19 17 50 50 H 1.08007 * 125.03097 * 180.21878 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 6 2.3478 2.0423 -1.1887 5 6 2.8094 3.3512 -1.2022 6 6 2.9521 4.0492 -0.0360 7 6 2.6318 3.4412 1.1790 8 6 2.6634 3.8794 2.5765 9 6 3.0943 5.2321 3.0823 10 6 1.9140 6.2030 3.0105 11 7 2.3343 7.5217 3.5030 12 6 1.2242 8.4823 3.4482 13 6 1.6990 9.8405 3.9684 14 1 2.1208 9.7202 4.9662 15 6 2.7670 10.4020 3.0276 16 6 0.5138 10.8062 4.0287 17 6 0.9547 12.1040 4.6552 18 1 1.9777 12.2275 4.9785 19 6 0.0516 13.1333 4.8167 20 7 -1.1944 12.9828 4.4235 21 14 0.5979 14.7417 5.5940 22 1 2.0377 14.6567 5.9475 23 1 0.3888 15.8530 4.6312 24 1 -0.1988 14.9939 6.8216 25 6 2.2303 2.8496 3.3206 26 7 1.9288 1.7858 2.5146 27 1 1.5973 0.9284 2.8242 28 6 2.1672 2.1132 1.1987 29 1 -0.3632 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.2404 1.5038 -2.1186 35 1 3.0580 3.8218 -2.1420 36 1 3.3122 5.0672 -0.0543 37 1 3.9113 5.6071 2.4659 38 1 3.4298 5.1436 4.1156 39 1 1.5786 6.2915 1.9772 40 1 1.0971 5.8280 3.6269 41 1 3.1325 7.8623 2.9884 42 1 0.8841 8.5861 2.4177 43 1 0.4023 8.1235 4.0677 44 1 2.3453 10.5224 2.0298 45 1 3.1050 11.3699 3.3980 46 1 3.6114 9.7140 2.9847 47 1 0.1479 10.9959 3.0196 48 1 -0.2834 10.3660 4.6275 49 1 -1.8296 13.7070 4.5368 50 1 2.1343 2.8591 4.3963 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602555032.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:37 Heat of formation + Delta-G solvation = 2.236877 kcal Electronic energy + Delta-G solvation = -24878.995169 eV Core-core repulsion = 21483.035682 eV Total energy + Delta-G solvation = -3395.959487 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.24267 -38.61125 -38.10285 -36.19896 -35.22320 -34.27623 -32.63211 -30.36671 -29.89450 -29.09932 -28.30195 -26.57450 -24.85614 -24.39856 -23.06996 -22.75734 -22.44204 -20.69799 -19.68189 -18.67426 -18.49303 -17.29503 -16.83198 -16.60101 -16.31050 -15.77511 -15.64831 -15.42629 -15.19760 -15.10640 -14.83593 -14.45356 -14.21733 -14.03286 -13.83963 -13.57908 -13.34349 -13.31530 -13.06843 -12.88513 -12.77797 -12.72523 -12.55441 -12.48960 -12.34064 -12.20739 -11.94799 -11.86488 -11.78261 -11.51365 -11.40572 -11.05683 -10.92743 -10.53307 -10.28036 -9.33628 -9.10495 -8.45442 -8.16546 -6.25737 0.21227 0.73167 1.40857 1.41133 1.54591 1.75179 2.29455 2.43002 2.95668 3.16679 3.33006 3.76516 3.85779 4.03536 4.15211 4.17908 4.24099 4.28452 4.33622 4.37562 4.42872 4.46736 4.52774 4.56771 4.67927 4.70621 4.77132 4.79697 4.88544 4.92726 4.96217 5.02007 5.04784 5.11734 5.15271 5.21761 5.27576 5.31678 5.38688 5.41002 5.49750 5.57124 5.67863 5.72209 5.81193 5.83331 5.88610 5.90441 6.10812 6.28538 6.32387 6.55240 6.74037 6.90565 7.42435 8.95782 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.026173 B = 0.001912 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.563488 B =14640.517698 C =14691.296873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.078 4.078 3 C -0.099 4.099 4 C -0.112 4.112 5 C -0.150 4.150 6 C -0.098 4.098 7 C -0.125 4.125 8 C -0.193 4.193 9 C -0.028 4.028 10 C 0.071 3.929 11 N -0.687 5.687 12 C 0.077 3.923 13 C -0.075 4.075 14 H 0.059 0.941 15 C -0.127 4.127 16 C 0.032 3.968 17 C -0.527 4.527 18 H 0.063 0.937 19 C -0.006 4.006 20 N -0.936 5.936 21 Si 0.963 3.037 22 H -0.261 1.261 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.063 3.937 26 N -0.585 5.585 27 H 0.427 0.573 28 C 0.084 3.916 29 H 0.042 0.958 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.071 0.929 34 H 0.144 0.856 35 H 0.136 0.864 36 H 0.118 0.882 37 H 0.066 0.934 38 H 0.085 0.915 39 H 0.015 0.985 40 H 0.063 0.937 41 H 0.344 0.656 42 H 0.018 0.982 43 H 0.055 0.945 44 H 0.038 0.962 45 H 0.046 0.954 46 H 0.068 0.932 47 H -0.012 1.012 48 H -0.014 1.014 49 H 0.261 0.739 50 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.788 -29.884 -8.830 32.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 C -0.101 4.101 4 C -0.131 4.131 5 C -0.169 4.169 6 C -0.116 4.116 7 C -0.130 4.130 8 C -0.200 4.200 9 C -0.067 4.067 10 C -0.058 4.058 11 N -0.319 5.319 12 C -0.052 4.052 13 C -0.094 4.094 14 H 0.077 0.923 15 C -0.184 4.184 16 C -0.006 4.006 17 C -0.565 4.565 18 H 0.081 0.919 19 C -0.203 4.203 20 N -0.577 5.577 21 Si 0.788 3.212 22 H -0.184 1.184 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.064 4.064 26 N -0.189 5.189 27 H 0.266 0.734 28 C -0.024 4.024 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.161 0.839 35 H 0.154 0.846 36 H 0.136 0.864 37 H 0.084 0.916 38 H 0.103 0.897 39 H 0.033 0.967 40 H 0.081 0.919 41 H 0.163 0.837 42 H 0.036 0.964 43 H 0.073 0.927 44 H 0.057 0.943 45 H 0.065 0.935 46 H 0.087 0.913 47 H 0.006 0.994 48 H 0.004 0.996 49 H 0.070 0.930 50 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 8.478 -30.087 -8.100 32.291 hybrid contribution -0.585 1.085 -0.512 1.335 sum 7.893 -29.001 -8.612 31.266 Atomic orbital electron populations 1.21738 0.94537 1.02354 1.01597 1.20484 0.96144 0.91279 1.03646 1.19188 1.03697 0.97255 0.89991 1.21010 0.99739 0.95035 0.97294 1.20874 1.02540 0.95357 0.98148 1.20444 1.00039 0.99815 0.91315 1.19428 1.05282 0.94307 0.93949 1.20319 1.11539 0.97115 0.91046 1.19708 0.96210 0.89058 1.01685 1.21896 0.98179 0.88844 0.96916 1.60538 1.08179 1.02683 1.60536 1.21823 0.93450 0.91978 0.97934 1.21024 0.96528 0.92908 0.98978 0.92256 1.21654 0.97906 1.00708 0.98141 1.19018 0.93237 0.93740 0.94594 1.21681 0.96435 0.99350 1.39016 0.91922 1.26000 0.94995 1.02814 0.96465 1.70119 1.04499 1.33960 1.49170 0.85418 0.78845 0.78915 0.77989 1.18449 1.20552 1.20595 1.22093 1.00403 0.86306 0.97550 1.41697 1.58097 1.15197 1.03881 0.73424 1.18252 1.03449 0.94869 0.85799 0.93862 0.92887 0.90828 0.89483 0.91012 0.83870 0.84645 0.86424 0.91566 0.89660 0.96668 0.91853 0.83662 0.96415 0.92659 0.94282 0.93461 0.91321 0.99358 0.99584 0.92981 0.78502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.90 71.98 0.71 -0.84 16 2 C -0.08 -0.86 6.07 29.85 0.18 -0.68 16 3 C -0.10 -1.69 5.15 -19.77 -0.10 -1.79 16 4 C -0.11 -1.90 9.65 22.30 0.22 -1.68 16 5 C -0.15 -2.87 9.97 22.03 0.22 -2.65 16 6 C -0.10 -2.20 10.05 22.23 0.22 -1.98 16 7 C -0.12 -2.92 6.35 -20.20 -0.13 -3.05 16 8 C -0.19 -4.10 5.57 -18.62 -0.10 -4.20 16 9 C -0.03 -0.60 6.01 29.85 0.18 -0.42 16 10 C 0.07 1.83 5.67 86.30 0.49 2.32 16 11 N -0.69 -20.21 6.50 -513.88 -3.34 -23.55 16 12 C 0.08 2.82 5.14 86.30 0.44 3.26 16 13 C -0.08 -3.18 2.55 -10.79 -0.03 -3.21 16 14 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 15 C -0.13 -4.72 8.77 71.98 0.63 -4.09 16 16 C 0.03 1.71 4.45 29.85 0.13 1.84 16 17 C -0.53 -30.31 8.41 25.60 0.22 -30.09 16 18 H 0.06 3.46 7.06 -2.91 -0.02 3.44 16 19 C -0.01 -0.34 5.46 84.65 0.46 0.12 16 20 N -0.94 -58.22 13.29 21.45 0.28 -57.94 16 21 Si 0.96 45.12 29.54 68.60 2.03 47.15 16 22 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 23 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 24 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 25 C 0.06 1.03 11.73 83.00 0.97 2.00 16 26 N -0.59 -8.83 6.07 -187.62 -1.14 -9.97 16 27 H 0.43 3.82 8.96 -92.71 -0.83 2.99 16 28 C 0.08 1.67 6.97 39.03 0.27 1.94 16 29 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.09 0.75 8.06 -2.39 -0.02 0.73 16 33 H 0.07 0.66 8.12 -2.39 -0.02 0.64 16 34 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 35 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 36 H 0.12 2.52 8.06 -2.91 -0.02 2.50 16 37 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.02 0.42 8.14 -2.39 -0.02 0.40 16 40 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.34 9.27 6.98 -89.69 -0.63 8.64 16 42 H 0.02 0.66 8.14 -2.38 -0.02 0.64 16 43 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 44 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.05 1.89 6.95 -2.39 -0.02 1.88 16 46 H 0.07 2.05 6.68 -2.39 -0.02 2.04 16 47 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 48 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 49 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 50 H 0.20 1.95 8.06 -2.91 -0.02 1.93 16 Total: -1.00 -70.05 403.77 2.28 -67.77 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: -0.55 Total: 19.73 kcal Atomic # 6 Polarization: -48.18 SS G_CDS: 4.99 Total: -43.19 kcal Atomic # 7 Polarization: -87.27 SS G_CDS: -4.19 Total: -91.46 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -70.05 2.28 -67.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602555032.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.005 kcal (2) G-P(sol) polarization free energy of solvation -70.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds