Wall clock time and date at job start Tue Mar 31 2020 10:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 120.00106 * 2 1 4 4 H 1.48500 * 109.46721 * 240.00183 * 3 2 1 5 5 H 1.48494 * 109.47157 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46610 * 120.00554 * 3 2 1 7 7 C 1.37874 * 119.99649 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99966 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00283 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47348 * 180.02562 * 9 7 2 11 11 N 1.46897 * 109.46925 * 180.02562 * 10 9 7 12 12 C 1.46901 * 110.99692 * 180.02562 * 11 10 9 13 13 H 1.09000 * 109.52406 * 34.87036 * 12 11 10 14 14 C 1.53124 * 109.57545 * 274.71111 * 12 11 10 15 15 C 1.53031 * 109.27814 * 182.40872 * 14 12 11 16 16 N 1.46846 * 109.52243 * 59.18792 * 15 14 12 17 17 C 1.46902 * 110.99993 * 174.16172 * 16 15 14 18 18 C 1.53001 * 117.49748 * 7.94605 * 17 16 15 19 19 C 1.53006 * 117.49517 * 299.28957 * 17 16 15 20 20 C 1.46848 * 111.19318 * 298.25104 * 16 15 14 21 21 H 1.09008 * 109.45510 * 301.73239 * 20 16 15 22 22 C 1.50704 * 109.46202 * 181.76512 * 20 16 15 23 23 C 1.38234 * 120.00277 * 139.94997 * 22 20 16 24 24 C 1.38230 * 119.99885 * 180.02562 * 23 22 20 25 25 C 1.38235 * 120.00326 * 359.97438 * 24 23 22 26 26 C 1.38234 * 119.99814 * 359.97438 * 25 24 23 27 27 C 1.38235 * 119.99518 * 319.96680 * 22 20 16 28 28 C 1.53029 * 109.52374 * 61.74730 * 20 16 15 29 29 H 0.96999 * 119.99682 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.47006 * 60.00118 * 9 7 2 31 31 H 1.09002 * 109.46809 * 300.00212 * 9 7 2 32 32 H 1.09005 * 109.46903 * 59.99809 * 10 9 7 33 33 H 1.09002 * 109.47290 * 300.00397 * 10 9 7 34 34 H 1.00897 * 111.00473 * 56.05061 * 11 10 9 35 35 H 1.09000 * 109.50311 * 302.35634 * 14 12 11 36 36 H 1.09008 * 109.49661 * 62.46758 * 14 12 11 37 37 H 1.09005 * 109.45970 * 179.19865 * 15 14 12 38 38 H 1.08997 * 109.46921 * 299.17446 * 15 14 12 39 39 H 1.08995 * 115.55586 * 153.62576 * 17 16 15 40 40 H 1.08996 * 117.50095 * 0.02562 * 18 17 16 41 41 H 1.09004 * 117.49850 * 145.02919 * 18 17 16 42 42 H 1.09002 * 117.49843 * 214.98105 * 19 17 16 43 43 H 1.09005 * 117.49574 * 359.97438 * 19 17 16 44 44 H 1.07992 * 119.99701 * 359.97438 * 23 22 20 45 45 H 1.08000 * 120.00356 * 179.97438 * 24 23 22 46 46 H 1.08000 * 120.00616 * 179.70664 * 25 24 23 47 47 H 1.08001 * 120.00299 * 179.97438 * 26 25 24 48 48 H 1.07997 * 120.00423 * 359.97438 * 27 22 20 49 49 H 1.09000 * 109.50638 * 60.76089 * 28 20 16 50 50 H 1.09008 * 109.50519 * 180.87818 * 28 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1031 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 7 1.5105 -4.9343 -0.0012 12 6 2.4349 -6.0759 -0.0006 13 1 3.3188 -5.8287 0.5874 14 6 2.8509 -6.4000 -1.4381 15 6 3.7657 -7.6268 -1.4351 16 7 3.0548 -8.7674 -0.8434 17 6 3.8519 -9.9969 -0.9495 18 6 5.2911 -9.8646 -1.4517 19 6 4.2191 -10.4818 -2.3534 20 6 2.6869 -8.4976 0.5524 21 1 3.5858 -8.2788 1.1290 22 6 1.9999 -9.7066 1.1333 23 6 2.2697 -10.0979 2.4313 24 6 1.6399 -11.2072 2.9639 25 6 0.7398 -11.9249 2.1986 26 6 0.4692 -11.5330 0.9009 27 6 1.1001 -10.4245 0.3678 28 6 1.7400 -7.2968 0.6087 29 1 -0.4849 0.8401 0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6246 -2.5571 0.8897 32 1 2.8718 -3.6044 0.8895 33 1 2.8718 -3.6044 -0.8905 34 1 0.8744 -4.9842 -0.7827 35 1 1.9634 -6.6091 -2.0354 36 1 3.3841 -5.5494 -1.8631 37 1 4.0522 -7.8687 -2.4586 38 1 4.6592 -7.4122 -0.8489 39 1 3.6507 -10.7544 -0.1920 40 1 5.6466 -8.8654 -1.7030 41 1 6.0367 -10.5355 -1.0248 42 1 4.2599 -11.5583 -2.5194 43 1 3.8688 -9.8887 -3.1983 44 1 2.9732 -9.5375 3.0290 45 1 1.8509 -11.5132 3.9779 46 1 0.2512 -12.7944 2.6130 47 1 -0.2337 -12.0939 0.3028 48 1 0.8891 -10.1187 -0.6463 49 1 0.8350 -7.5201 0.0437 50 1 1.4795 -7.0871 1.6462 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602603569.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:27 Heat of formation + Delta-G solvation = 49.328967 kcal Electronic energy + Delta-G solvation = -26149.938368 eV Core-core repulsion = 22756.020948 eV Total energy + Delta-G solvation = -3393.917420 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.52264 -38.69370 -37.16920 -34.90165 -33.12961 -32.28862 -31.03538 -30.74509 -29.13110 -28.12939 -24.63819 -23.79659 -23.29444 -22.59365 -22.49506 -21.26115 -20.68303 -20.41692 -19.30674 -17.26730 -16.52525 -16.29286 -15.83849 -15.30369 -15.11313 -14.93345 -14.43230 -14.34794 -13.93926 -13.90227 -13.78948 -13.41452 -13.20470 -12.92713 -12.80270 -12.37908 -12.26700 -12.00415 -11.84539 -11.55642 -11.34739 -11.27040 -11.15901 -11.02455 -10.93054 -10.88205 -10.68782 -10.56830 -10.39823 -10.37041 -9.96046 -9.35428 -9.14902 -9.02227 -8.78509 -8.34118 -8.29698 -7.74898 -5.98549 -4.01248 1.20936 1.30500 3.33728 3.38155 3.39507 3.40377 3.67420 3.81500 4.40995 4.44714 4.64577 4.67550 4.75609 4.78242 4.82448 4.86579 4.90436 5.03196 5.11900 5.16462 5.28822 5.37151 5.39185 5.41497 5.43510 5.46087 5.53548 5.57057 5.69601 5.72643 5.82781 5.85608 5.90336 5.95778 5.97864 6.07930 6.27404 6.32795 6.35703 6.40452 6.41140 6.45982 6.51697 6.86859 6.94341 6.99459 7.01318 7.51974 7.74977 7.84839 7.98800 8.10650 8.44896 9.05932 9.62381 11.12846 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.017440 B = 0.002645 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.095525 B =10581.922317 C =11628.597028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.026 3.974 10 C 0.067 3.933 11 N -0.685 5.685 12 C 0.087 3.913 13 H 0.069 0.931 14 C -0.147 4.147 15 C 0.059 3.941 16 N -0.497 5.497 17 C 0.026 3.974 18 C -0.223 4.223 19 C -0.171 4.171 20 C 0.128 3.872 21 H 0.050 0.950 22 C -0.075 4.075 23 C -0.116 4.116 24 C -0.123 4.123 25 C -0.124 4.124 26 C -0.126 4.126 27 C -0.090 4.090 28 C -0.093 4.093 29 H 0.261 0.739 30 H 0.013 0.987 31 H 0.025 0.975 32 H 0.056 0.944 33 H 0.015 0.985 34 H 0.338 0.662 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.038 0.962 39 H 0.118 0.882 40 H 0.099 0.901 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.119 0.881 45 H 0.119 0.881 46 H 0.117 0.883 47 H 0.119 0.881 48 H 0.131 0.869 49 H 0.072 0.928 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.400 -26.558 -0.116 27.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.071 0.929 9 C -0.012 4.012 10 C -0.061 4.061 11 N -0.314 5.314 12 C -0.024 4.024 13 H 0.088 0.912 14 C -0.187 4.187 15 C -0.069 4.069 16 N -0.219 5.219 17 C -0.084 4.084 18 C -0.262 4.262 19 C -0.209 4.209 20 C 0.020 3.980 21 H 0.068 0.932 22 C -0.076 4.076 23 C -0.134 4.134 24 C -0.141 4.141 25 C -0.142 4.142 26 C -0.144 4.144 27 C -0.108 4.108 28 C -0.131 4.131 29 H 0.071 0.929 30 H 0.032 0.968 31 H 0.043 0.957 32 H 0.074 0.926 33 H 0.033 0.967 34 H 0.155 0.845 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.056 0.944 39 H 0.136 0.864 40 H 0.117 0.883 41 H 0.109 0.891 42 H 0.113 0.887 43 H 0.114 0.886 44 H 0.137 0.863 45 H 0.137 0.863 46 H 0.135 0.865 47 H 0.137 0.863 48 H 0.149 0.851 49 H 0.091 0.909 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.699 -26.449 0.321 27.058 hybrid contribution 1.583 1.065 -0.517 1.977 sum 7.282 -25.384 -0.196 26.408 Atomic orbital electron populations 1.69965 1.06019 1.26686 1.50562 1.25001 0.94840 0.99181 0.95319 0.86656 0.79575 0.83173 0.78572 1.20313 1.21257 1.20233 1.21141 0.92905 0.91075 1.50986 0.92881 1.19059 0.94025 0.90419 0.97688 1.22168 0.96955 0.88549 0.98431 1.60637 1.19262 1.01809 1.49719 1.21593 0.95286 0.91421 0.94073 0.91239 1.22390 1.00380 0.96653 0.99266 1.22132 0.95192 0.90177 0.99407 1.61815 1.41229 1.01907 1.16973 1.22668 0.92623 0.95005 0.98079 1.23566 0.93455 1.02973 1.06167 1.23039 1.02631 1.00755 0.94468 1.20575 0.96914 0.92936 0.87566 0.93241 1.19750 0.97648 0.96170 0.94003 1.21045 1.00304 0.97036 0.95045 1.21068 0.97459 0.95879 0.99739 1.21135 0.98487 0.99938 0.94673 1.21187 1.00079 0.97498 0.95603 1.21090 0.95053 0.94389 1.00251 1.21606 0.98054 0.91362 1.02074 0.92935 0.96834 0.95695 0.92553 0.96709 0.84456 0.90896 0.91268 0.90672 0.94403 0.86380 0.88273 0.89095 0.88747 0.88578 0.86285 0.86309 0.86468 0.86289 0.85140 0.90887 0.90648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.12 13.29 55.43 0.74 -26.39 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 7 C -0.52 -14.92 9.11 -34.44 -0.31 -15.24 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.03 0.67 5.23 -27.88 -0.15 0.52 16 10 C 0.07 1.41 5.42 -3.83 -0.02 1.39 16 11 N -0.69 -12.08 6.25 -106.59 -0.67 -12.75 16 12 C 0.09 1.24 2.53 -67.58 -0.17 1.06 16 13 H 0.07 1.04 7.80 -51.93 -0.41 0.63 16 14 C -0.15 -1.85 5.35 -26.65 -0.14 -2.00 16 15 C 0.06 0.64 4.09 -3.84 -0.02 0.62 16 16 N -0.50 -5.22 4.06 -220.14 -0.89 -6.11 16 17 C 0.03 0.24 5.35 -67.71 -0.36 -0.12 16 18 C -0.22 -1.93 9.51 -26.69 -0.25 -2.18 16 19 C -0.17 -1.45 9.98 -26.69 -0.27 -1.72 16 20 C 0.13 1.41 2.04 -68.88 -0.14 1.27 16 21 H 0.05 0.56 8.00 -51.92 -0.42 0.15 16 22 C -0.08 -0.79 3.41 -104.62 -0.36 -1.15 16 23 C -0.12 -1.14 9.67 -39.59 -0.38 -1.53 16 24 C -0.12 -1.11 10.05 -39.59 -0.40 -1.51 16 25 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 26 C -0.13 -1.15 10.05 -39.58 -0.40 -1.55 16 27 C -0.09 -0.92 8.48 -39.58 -0.34 -1.25 16 28 C -0.09 -1.18 4.96 -26.65 -0.13 -1.31 16 29 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.06 1.20 8.06 -51.93 -0.42 0.78 16 33 H 0.01 0.30 7.51 -51.93 -0.39 -0.09 16 34 H 0.34 5.84 8.45 -39.29 -0.33 5.51 16 35 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 36 H 0.07 0.93 7.55 -51.92 -0.39 0.53 16 37 H 0.07 0.76 6.49 -51.93 -0.34 0.43 16 38 H 0.04 0.42 7.35 -51.93 -0.38 0.04 16 39 H 0.12 1.17 6.47 -51.93 -0.34 0.83 16 40 H 0.10 0.89 5.91 -51.93 -0.31 0.58 16 41 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.10 0.85 7.55 -51.93 -0.39 0.46 16 44 H 0.12 1.05 8.04 -52.49 -0.42 0.63 16 45 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 46 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 47 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 48 H 0.13 1.38 7.72 -52.49 -0.41 0.97 16 49 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 50 H 0.07 1.03 8.14 -51.92 -0.42 0.61 16 LS Contribution 389.26 15.07 5.87 5.87 Total: -1.00 -29.80 389.26 -13.01 -42.81 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -8.70 Total: 4.38 kcal Atomic # 6 Polarization: -20.25 SS G_CDS: -4.33 Total: -24.58 kcal Atomic # 7 Polarization: -44.43 SS G_CDS: -0.82 Total: -45.25 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -29.80 -13.01 -42.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602603569.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.135 kcal (2) G-P(sol) polarization free energy of solvation -29.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds