Wall clock time and date at job start Tue Mar 31 2020 10:51:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86800 * 120.00017 * 2 1
4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1
5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1
6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1
7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3
8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1
9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1
10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2
11 11 N 1.46896 * 109.47029 * 180.02562 * 10 9 7
12 12 C 1.46901 * 110.99830 * 180.02562 * 11 10 9
13 13 H 1.09000 * 109.52178 * 325.11849 * 12 11 10
14 14 C 1.53117 * 109.52674 * 85.31417 * 12 11 10
15 15 C 1.53036 * 109.27848 * 177.55801 * 14 12 11
16 16 N 1.46854 * 109.52289 * 300.81978 * 15 14 12
17 17 C 1.46899 * 110.99883 * 185.83560 * 16 15 14
18 18 C 1.53002 * 117.49680 * 124.53851 * 17 16 15
19 19 C 1.53004 * 117.49747 * 55.87961 * 17 16 15
20 20 C 1.46850 * 111.19729 * 61.74689 * 16 15 14
21 21 H 1.08999 * 109.46186 * 58.26659 * 20 16 15
22 22 C 1.50698 * 109.45312 * 178.24701 * 20 16 15
23 23 C 1.38233 * 120.00371 * 39.77206 * 22 20 16
24 24 C 1.38227 * 119.99888 * 179.76929 * 23 22 20
25 25 C 1.38236 * 120.00323 * 0.49940 * 24 23 22
26 26 C 1.38236 * 119.99556 * 359.75498 * 25 24 23
27 27 C 1.38232 * 120.00286 * 359.97438 * 26 25 24
28 28 C 1.53042 * 109.51826 * 298.25638 * 20 16 15
29 29 H 0.97001 * 119.99646 * 179.97438 * 1 2 3
30 30 H 1.09001 * 109.46564 * 300.00328 * 9 7 2
31 31 H 1.09006 * 109.46863 * 59.99666 * 9 7 2
32 32 H 1.09000 * 109.46986 * 300.00089 * 10 9 7
33 33 H 1.09002 * 109.46857 * 60.00224 * 10 9 7
34 34 H 1.00897 * 111.00046 * 56.04666 * 11 10 9
35 35 H 1.08992 * 109.50507 * 297.50192 * 14 12 11
36 36 H 1.09007 * 109.50185 * 57.62163 * 14 12 11
37 37 H 1.09000 * 109.46573 * 180.80769 * 15 14 12
38 38 H 1.09001 * 109.46351 * 60.83770 * 15 14 12
39 39 H 1.08997 * 115.55701 * 270.21315 * 17 16 15
40 40 H 1.09000 * 117.50065 * 0.02562 * 18 17 16
41 41 H 1.09002 * 117.49889 * 145.02386 * 18 17 16
42 42 H 1.08992 * 117.50504 * 214.97730 * 19 17 16
43 43 H 1.09000 * 117.49801 * 0.02562 * 19 17 16
44 44 H 1.07998 * 119.99573 * 359.97438 * 23 22 20
45 45 H 1.08001 * 119.99816 * 180.22833 * 24 23 22
46 46 H 1.07998 * 119.99863 * 179.72203 * 25 24 23
47 47 H 1.08005 * 119.99442 * 179.97438 * 26 25 24
48 48 H 1.08002 * 119.99841 * 179.97438 * 27 26 25
49 49 H 1.09003 * 109.50429 * 299.23608 * 28 20 16
50 50 H 1.09003 * 109.53037 * 179.14450 * 28 20 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 1.2842 2.7465 -0.0006
5 1 3.1029 1.6965 1.2125
6 1 3.1029 1.6964 -1.2125
7 6 2.0046 -1.1940 0.0005
8 1 3.0846 -1.1940 0.0010
9 6 1.2511 -2.4992 0.0005
10 6 2.2454 -3.6621 0.0005
11 7 1.5109 -4.9342 -0.0001
12 6 2.4354 -6.0758 0.0005
13 1 3.3200 -5.8285 -0.5863
14 6 2.8480 -6.3995 1.4391
15 6 3.7623 -7.6267 1.4385
16 7 3.0524 -8.7673 0.8456
17 6 3.8487 -9.9970 0.9538
18 6 3.1998 -11.2007 1.6401
19 6 4.3086 -10.4201 2.3504
20 6 2.6877 -8.4979 -0.5512
21 1 3.5878 -8.2796 -1.1259
22 6 2.0013 -9.7068 -1.1328
23 6 1.1035 -10.4270 -0.3673
24 6 0.4704 -11.5331 -0.9025
25 6 0.7427 -11.9251 -2.1998
26 6 1.6445 -11.2079 -2.9636
27 6 2.2735 -10.0985 -2.4303
28 6 1.7414 -7.2966 -0.6100
29 1 -0.4850 -0.8401 -0.0004
30 1 0.6241 -2.5566 0.8903
31 1 0.6247 -2.5571 -0.8897
32 1 2.8720 -3.6043 -0.8894
33 1 2.8720 -3.6043 0.8906
34 1 0.8747 -4.9841 -0.7817
35 1 3.3805 -5.5492 1.8650
36 1 1.9591 -6.6082 2.0344
37 1 4.0464 -7.8685 2.4627
38 1 4.6574 -7.4125 0.8544
39 1 4.5225 -10.1957 0.1204
40 1 2.1819 -11.0803 2.0109
41 1 3.4470 -12.1913 1.2584
42 1 5.2847 -10.8975 2.4358
43 1 4.0199 -9.7863 3.1889
44 1 0.8943 -10.1235 0.6478
45 1 -0.2338 -12.0936 -0.3056
46 1 0.2514 -12.7919 -2.6164
47 1 1.8576 -11.5145 -3.9771
48 1 2.9783 -9.5385 -3.0270
49 1 0.8350 -7.5193 -0.0469
50 1 1.4826 -7.0870 -1.6479
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000602603570.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:51:30
Heat of formation + Delta-G solvation = 43.731228 kcal
Electronic energy + Delta-G solvation = -26227.711013 eV
Core-core repulsion = 22833.550856 eV
Total energy + Delta-G solvation = -3394.160157 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 314.205 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-40.42432 -38.53342 -37.14062 -35.08278 -33.31103 -32.50448 -31.03281 -30.82239
-29.17071 -27.90345 -24.33556 -23.80779 -23.19237 -22.68717 -22.24585 -21.40318
-20.79033 -20.33573 -19.55503 -17.42650 -16.68085 -16.33765 -15.58053 -15.40029
-15.35182 -15.02760 -14.52985 -14.23435 -14.02480 -13.71170 -13.67465 -13.42591
-13.36204 -13.10909 -12.85475 -12.56762 -12.41639 -11.96167 -11.78764 -11.59963
-11.42656 -11.31164 -11.22871 -11.04646 -10.88263 -10.68392 -10.59656 -10.47158
-10.15384 -10.11575 -10.03908 -9.68910 -9.03176 -8.82903 -8.55700 -8.46416
-8.30479 -7.89891 -6.33889 -4.02667 1.19450 1.29406 3.44782 3.45190
3.47084 3.60692 3.65834 3.70222 4.40840 4.48523 4.62473 4.72270
4.73074 4.77969 4.84808 4.87863 4.95749 5.00618 5.06370 5.18800
5.25848 5.34548 5.42119 5.44004 5.44196 5.46628 5.49072 5.53679
5.67039 5.73007 5.80393 5.84280 5.92521 5.95299 5.99428 6.07840
6.20140 6.24693 6.29917 6.31689 6.38711 6.47310 6.51493 6.85333
6.85783 6.96366 7.01172 7.30055 7.52499 7.71407 7.88674 8.26855
8.48737 8.91291 9.69855 11.07341
Molecular weight = 314.21amu
Principal moments of inertia in cm(-1)
A = 0.019267 B = 0.002603 C = 0.002397
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1452.942638 B =10753.597880 C =11678.019638
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.912 5.912
2 C 0.015 3.985
3 Si 1.069 2.931
4 H -0.282 1.282
5 H -0.288 1.288
6 H -0.289 1.289
7 C -0.603 4.603
8 H 0.047 0.953
9 C 0.013 3.987
10 C 0.074 3.926
11 N -0.687 5.687
12 C 0.087 3.913
13 H 0.034 0.966
14 C -0.104 4.104
15 C 0.060 3.940
16 N -0.502 5.502
17 C 0.012 3.988
18 C -0.158 4.158
19 C -0.179 4.179
20 C 0.134 3.866
21 H 0.047 0.953
22 C -0.074 4.074
23 C -0.082 4.082
24 C -0.126 4.126
25 C -0.123 4.123
26 C -0.125 4.125
27 C -0.117 4.117
28 C -0.107 4.107
29 H 0.270 0.730
30 H 0.016 0.984
31 H 0.004 0.996
32 H 0.015 0.985
33 H 0.059 0.941
34 H 0.336 0.664
35 H 0.068 0.932
36 H 0.078 0.922
37 H 0.078 0.922
38 H 0.031 0.969
39 H 0.085 0.915
40 H 0.100 0.900
41 H 0.089 0.911
42 H 0.092 0.908
43 H 0.099 0.901
44 H 0.130 0.870
45 H 0.119 0.881
46 H 0.117 0.883
47 H 0.118 0.882
48 H 0.116 0.884
49 H 0.082 0.918
50 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.438 -27.376 -0.968 28.140
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.549 5.549
2 C -0.189 4.189
3 Si 0.897 3.103
4 H -0.207 1.207
5 H -0.214 1.214
6 H -0.215 1.215
7 C -0.642 4.642
8 H 0.065 0.935
9 C -0.025 4.025
10 C -0.054 4.054
11 N -0.318 5.318
12 C -0.023 4.023
13 H 0.052 0.948
14 C -0.143 4.143
15 C -0.068 4.068
16 N -0.226 5.226
17 C -0.097 4.097
18 C -0.196 4.196
19 C -0.216 4.216
20 C 0.026 3.974
21 H 0.065 0.935
22 C -0.074 4.074
23 C -0.101 4.101
24 C -0.144 4.144
25 C -0.141 4.141
26 C -0.143 4.143
27 C -0.135 4.135
28 C -0.145 4.145
29 H 0.080 0.920
30 H 0.035 0.965
31 H 0.022 0.978
32 H 0.033 0.967
33 H 0.078 0.922
34 H 0.153 0.847
35 H 0.087 0.913
36 H 0.096 0.904
37 H 0.097 0.903
38 H 0.049 0.951
39 H 0.102 0.898
40 H 0.118 0.882
41 H 0.108 0.892
42 H 0.110 0.890
43 H 0.117 0.883
44 H 0.148 0.852
45 H 0.137 0.863
46 H 0.135 0.865
47 H 0.136 0.864
48 H 0.135 0.865
49 H 0.101 0.899
50 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges 5.733 -25.761 -0.019 26.391
hybrid contribution 1.371 -1.563 -1.500 2.563
sum 7.104 -27.323 -1.519 28.272
Atomic orbital electron populations
1.70768 1.06863 1.30715 1.46515 1.25836 0.96568 1.02667 0.93818
0.83547 0.74882 0.75380 0.76459 1.20735 1.21432 1.21538 1.21995
0.94187 0.92057 1.55954 0.93491 1.19193 0.94670 0.92235 0.96379
1.22033 0.96587 0.88074 0.98681 1.60606 1.19684 1.01862 1.49620
1.21520 0.94338 0.90601 0.95866 0.94760 1.21595 0.99915 0.95692
0.97062 1.22117 0.95025 0.90120 0.99521 1.61732 1.42113 1.01991
1.16789 1.22286 0.99443 0.92288 0.95702 1.23076 0.98302 0.95020
1.03194 1.23104 0.99183 1.03978 0.95337 1.20471 0.96588 0.92560
0.87828 0.93540 1.19703 0.97616 0.96201 0.93884 1.21056 0.94806
0.94238 0.99960 1.21165 1.00099 0.97559 0.95605 1.21118 0.98445
0.99872 0.94703 1.21043 0.97606 0.95907 0.99708 1.21014 1.00289
0.97128 0.95092 1.21807 0.99098 0.92645 1.00962 0.91979 0.96526
0.97812 0.96690 0.92219 0.84654 0.91332 0.90362 0.90343 0.95060
0.89757 0.88178 0.89245 0.88972 0.88272 0.85244 0.86342 0.86517
0.86411 0.86547 0.89942 0.91585
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -28.52 13.65 55.43 0.76 -27.77 16
2 C 0.01 0.44 5.46 -17.82 -0.10 0.34 16
3 Si 1.07 25.68 29.90 -169.99 -5.08 20.60 16
4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16
5 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16
6 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16
7 C -0.60 -17.57 9.11 -34.44 -0.31 -17.89 16
8 H 0.05 1.34 7.74 -52.48 -0.41 0.93 16
9 C 0.01 0.33 4.54 -27.88 -0.13 0.21 16
10 C 0.07 1.60 5.42 -3.83 -0.02 1.58 16
11 N -0.69 -12.27 6.31 -106.60 -0.67 -12.94 16
12 C 0.09 1.27 2.56 -67.59 -0.17 1.09 16
13 H 0.03 0.53 7.80 -51.93 -0.41 0.12 16
14 C -0.10 -1.41 5.59 -26.65 -0.15 -1.56 16
15 C 0.06 0.67 5.34 -3.83 -0.02 0.65 16
16 N -0.50 -5.33 3.99 -220.13 -0.88 -6.21 16
17 C 0.01 0.11 4.12 -67.71 -0.28 -0.17 16
18 C -0.16 -1.32 8.87 -26.69 -0.24 -1.56 16
19 C -0.18 -1.46 9.70 -26.69 -0.26 -1.72 16
20 C 0.13 1.48 2.01 -68.87 -0.14 1.34 16
21 H 0.05 0.53 8.00 -51.93 -0.42 0.12 16
22 C -0.07 -0.77 4.03 -104.63 -0.42 -1.19 16
23 C -0.08 -0.83 7.32 -39.59 -0.29 -1.12 16
24 C -0.13 -1.14 10.05 -39.59 -0.40 -1.53 16
25 C -0.12 -1.07 10.05 -39.58 -0.40 -1.46 16
26 C -0.12 -1.12 10.05 -39.58 -0.40 -1.51 16
27 C -0.12 -1.15 9.67 -39.58 -0.38 -1.53 16
28 C -0.11 -1.34 4.62 -26.65 -0.12 -1.46 16
29 H 0.27 8.42 7.22 -40.82 -0.29 8.13 16
30 H 0.02 0.46 8.01 -51.93 -0.42 0.05 16
31 H 0.00 0.10 8.01 -51.93 -0.42 -0.32 16
32 H 0.01 0.32 8.06 -51.93 -0.42 -0.10 16
33 H 0.06 1.30 7.51 -51.93 -0.39 0.91 16
34 H 0.34 5.83 8.36 -39.29 -0.33 5.50 16
35 H 0.07 1.00 7.54 -51.93 -0.39 0.61 16
36 H 0.08 1.14 8.14 -51.92 -0.42 0.71 16
37 H 0.08 0.81 6.68 -51.93 -0.35 0.46 16
38 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16
39 H 0.08 0.83 8.08 -51.93 -0.42 0.41 16
40 H 0.10 0.88 7.11 -51.93 -0.37 0.51 16
41 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16
42 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16
43 H 0.10 0.84 7.24 -51.93 -0.38 0.47 16
44 H 0.13 1.34 6.78 -52.49 -0.36 0.99 16
45 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16
46 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16
47 H 0.12 0.84 8.06 -52.48 -0.42 0.41 16
48 H 0.12 1.03 8.04 -52.49 -0.42 0.61 16
49 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16
50 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16
LS Contribution 388.90 15.07 5.86 5.86
Total: -1.00 -30.87 388.90 -13.01 -43.88
By element:
Atomic # 1 Polarization: 12.85 SS G_CDS: -8.77 Total: 4.07 kcal
Atomic # 6 Polarization: -23.27 SS G_CDS: -4.22 Total: -27.49 kcal
Atomic # 7 Polarization: -46.13 SS G_CDS: -0.79 Total: -46.92 kcal
Atomic # 14 Polarization: 25.68 SS G_CDS: -5.08 Total: 20.60 kcal
Total LS contribution 5.86 Total: 5.86 kcal
Total: -30.87 -13.01 -43.88 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000602603570.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 87.614 kcal
(2) G-P(sol) polarization free energy of solvation -30.869 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.745 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.014 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.883 kcal
(6) G-S(sol) free energy of system = (1) + (5) 43.731 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds