Wall clock time and date at job start Tue Mar 31 2020 10:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 N 1.46896 * 109.47029 * 180.02562 * 10 9 7 12 12 C 1.46901 * 110.99830 * 180.02562 * 11 10 9 13 13 H 1.09000 * 109.52178 * 325.11849 * 12 11 10 14 14 C 1.53117 * 109.52674 * 85.31417 * 12 11 10 15 15 C 1.53036 * 109.27848 * 177.55801 * 14 12 11 16 16 N 1.46854 * 109.52289 * 300.81978 * 15 14 12 17 17 C 1.46899 * 110.99883 * 185.83560 * 16 15 14 18 18 C 1.53002 * 117.49680 * 124.53851 * 17 16 15 19 19 C 1.53004 * 117.49747 * 55.87961 * 17 16 15 20 20 C 1.46850 * 111.19729 * 61.74689 * 16 15 14 21 21 H 1.08999 * 109.46186 * 58.26659 * 20 16 15 22 22 C 1.50698 * 109.45312 * 178.24701 * 20 16 15 23 23 C 1.38233 * 120.00371 * 39.77206 * 22 20 16 24 24 C 1.38227 * 119.99888 * 179.76929 * 23 22 20 25 25 C 1.38236 * 120.00323 * 0.49940 * 24 23 22 26 26 C 1.38236 * 119.99556 * 359.75498 * 25 24 23 27 27 C 1.38232 * 120.00286 * 359.97438 * 26 25 24 28 28 C 1.53042 * 109.51826 * 298.25638 * 20 16 15 29 29 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 31 31 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 32 32 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 33 33 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 34 34 H 1.00897 * 111.00046 * 56.04666 * 11 10 9 35 35 H 1.08992 * 109.50507 * 297.50192 * 14 12 11 36 36 H 1.09007 * 109.50185 * 57.62163 * 14 12 11 37 37 H 1.09000 * 109.46573 * 180.80769 * 15 14 12 38 38 H 1.09001 * 109.46351 * 60.83770 * 15 14 12 39 39 H 1.08997 * 115.55701 * 270.21315 * 17 16 15 40 40 H 1.09000 * 117.50065 * 0.02562 * 18 17 16 41 41 H 1.09002 * 117.49889 * 145.02386 * 18 17 16 42 42 H 1.08992 * 117.50504 * 214.97730 * 19 17 16 43 43 H 1.09000 * 117.49801 * 0.02562 * 19 17 16 44 44 H 1.07998 * 119.99573 * 359.97438 * 23 22 20 45 45 H 1.08001 * 119.99816 * 180.22833 * 24 23 22 46 46 H 1.07998 * 119.99863 * 179.72203 * 25 24 23 47 47 H 1.08005 * 119.99442 * 179.97438 * 26 25 24 48 48 H 1.08002 * 119.99841 * 179.97438 * 27 26 25 49 49 H 1.09003 * 109.50429 * 299.23608 * 28 20 16 50 50 H 1.09003 * 109.53037 * 179.14450 * 28 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5109 -4.9342 -0.0001 12 6 2.4354 -6.0758 0.0005 13 1 3.3200 -5.8285 -0.5863 14 6 2.8480 -6.3995 1.4391 15 6 3.7623 -7.6267 1.4385 16 7 3.0524 -8.7673 0.8456 17 6 3.8487 -9.9970 0.9538 18 6 3.1998 -11.2007 1.6401 19 6 4.3086 -10.4201 2.3504 20 6 2.6877 -8.4979 -0.5512 21 1 3.5878 -8.2796 -1.1259 22 6 2.0013 -9.7068 -1.1328 23 6 1.1035 -10.4270 -0.3673 24 6 0.4704 -11.5331 -0.9025 25 6 0.7427 -11.9251 -2.1998 26 6 1.6445 -11.2079 -2.9636 27 6 2.2735 -10.0985 -2.4303 28 6 1.7414 -7.2966 -0.6100 29 1 -0.4850 -0.8401 -0.0004 30 1 0.6241 -2.5566 0.8903 31 1 0.6247 -2.5571 -0.8897 32 1 2.8720 -3.6043 -0.8894 33 1 2.8720 -3.6043 0.8906 34 1 0.8747 -4.9841 -0.7817 35 1 3.3805 -5.5492 1.8650 36 1 1.9591 -6.6082 2.0344 37 1 4.0464 -7.8685 2.4627 38 1 4.6574 -7.4125 0.8544 39 1 4.5225 -10.1957 0.1204 40 1 2.1819 -11.0803 2.0109 41 1 3.4470 -12.1913 1.2584 42 1 5.2847 -10.8975 2.4358 43 1 4.0199 -9.7863 3.1889 44 1 0.8943 -10.1235 0.6478 45 1 -0.2338 -12.0936 -0.3056 46 1 0.2514 -12.7919 -2.6164 47 1 1.8576 -11.5145 -3.9771 48 1 2.9783 -9.5385 -3.0270 49 1 0.8350 -7.5193 -0.0469 50 1 1.4826 -7.0870 -1.6479 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602603570.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:30 Heat of formation + Delta-G solvation = 43.731228 kcal Electronic energy + Delta-G solvation = -26227.711013 eV Core-core repulsion = 22833.550856 eV Total energy + Delta-G solvation = -3394.160157 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.42432 -38.53342 -37.14062 -35.08278 -33.31103 -32.50448 -31.03281 -30.82239 -29.17071 -27.90345 -24.33556 -23.80779 -23.19237 -22.68717 -22.24585 -21.40318 -20.79033 -20.33573 -19.55503 -17.42650 -16.68085 -16.33765 -15.58053 -15.40029 -15.35182 -15.02760 -14.52985 -14.23435 -14.02480 -13.71170 -13.67465 -13.42591 -13.36204 -13.10909 -12.85475 -12.56762 -12.41639 -11.96167 -11.78764 -11.59963 -11.42656 -11.31164 -11.22871 -11.04646 -10.88263 -10.68392 -10.59656 -10.47158 -10.15384 -10.11575 -10.03908 -9.68910 -9.03176 -8.82903 -8.55700 -8.46416 -8.30479 -7.89891 -6.33889 -4.02667 1.19450 1.29406 3.44782 3.45190 3.47084 3.60692 3.65834 3.70222 4.40840 4.48523 4.62473 4.72270 4.73074 4.77969 4.84808 4.87863 4.95749 5.00618 5.06370 5.18800 5.25848 5.34548 5.42119 5.44004 5.44196 5.46628 5.49072 5.53679 5.67039 5.73007 5.80393 5.84280 5.92521 5.95299 5.99428 6.07840 6.20140 6.24693 6.29917 6.31689 6.38711 6.47310 6.51493 6.85333 6.85783 6.96366 7.01172 7.30055 7.52499 7.71407 7.88674 8.26855 8.48737 8.91291 9.69855 11.07341 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.019267 B = 0.002603 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.942638 B =10753.597880 C =11678.019638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.015 3.985 3 Si 1.069 2.931 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.603 4.603 8 H 0.047 0.953 9 C 0.013 3.987 10 C 0.074 3.926 11 N -0.687 5.687 12 C 0.087 3.913 13 H 0.034 0.966 14 C -0.104 4.104 15 C 0.060 3.940 16 N -0.502 5.502 17 C 0.012 3.988 18 C -0.158 4.158 19 C -0.179 4.179 20 C 0.134 3.866 21 H 0.047 0.953 22 C -0.074 4.074 23 C -0.082 4.082 24 C -0.126 4.126 25 C -0.123 4.123 26 C -0.125 4.125 27 C -0.117 4.117 28 C -0.107 4.107 29 H 0.270 0.730 30 H 0.016 0.984 31 H 0.004 0.996 32 H 0.015 0.985 33 H 0.059 0.941 34 H 0.336 0.664 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.031 0.969 39 H 0.085 0.915 40 H 0.100 0.900 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.099 0.901 44 H 0.130 0.870 45 H 0.119 0.881 46 H 0.117 0.883 47 H 0.118 0.882 48 H 0.116 0.884 49 H 0.082 0.918 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.438 -27.376 -0.968 28.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.189 4.189 3 Si 0.897 3.103 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.215 1.215 7 C -0.642 4.642 8 H 0.065 0.935 9 C -0.025 4.025 10 C -0.054 4.054 11 N -0.318 5.318 12 C -0.023 4.023 13 H 0.052 0.948 14 C -0.143 4.143 15 C -0.068 4.068 16 N -0.226 5.226 17 C -0.097 4.097 18 C -0.196 4.196 19 C -0.216 4.216 20 C 0.026 3.974 21 H 0.065 0.935 22 C -0.074 4.074 23 C -0.101 4.101 24 C -0.144 4.144 25 C -0.141 4.141 26 C -0.143 4.143 27 C -0.135 4.135 28 C -0.145 4.145 29 H 0.080 0.920 30 H 0.035 0.965 31 H 0.022 0.978 32 H 0.033 0.967 33 H 0.078 0.922 34 H 0.153 0.847 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.049 0.951 39 H 0.102 0.898 40 H 0.118 0.882 41 H 0.108 0.892 42 H 0.110 0.890 43 H 0.117 0.883 44 H 0.148 0.852 45 H 0.137 0.863 46 H 0.135 0.865 47 H 0.136 0.864 48 H 0.135 0.865 49 H 0.101 0.899 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.733 -25.761 -0.019 26.391 hybrid contribution 1.371 -1.563 -1.500 2.563 sum 7.104 -27.323 -1.519 28.272 Atomic orbital electron populations 1.70768 1.06863 1.30715 1.46515 1.25836 0.96568 1.02667 0.93818 0.83547 0.74882 0.75380 0.76459 1.20735 1.21432 1.21538 1.21995 0.94187 0.92057 1.55954 0.93491 1.19193 0.94670 0.92235 0.96379 1.22033 0.96587 0.88074 0.98681 1.60606 1.19684 1.01862 1.49620 1.21520 0.94338 0.90601 0.95866 0.94760 1.21595 0.99915 0.95692 0.97062 1.22117 0.95025 0.90120 0.99521 1.61732 1.42113 1.01991 1.16789 1.22286 0.99443 0.92288 0.95702 1.23076 0.98302 0.95020 1.03194 1.23104 0.99183 1.03978 0.95337 1.20471 0.96588 0.92560 0.87828 0.93540 1.19703 0.97616 0.96201 0.93884 1.21056 0.94806 0.94238 0.99960 1.21165 1.00099 0.97559 0.95605 1.21118 0.98445 0.99872 0.94703 1.21043 0.97606 0.95907 0.99708 1.21014 1.00289 0.97128 0.95092 1.21807 0.99098 0.92645 1.00962 0.91979 0.96526 0.97812 0.96690 0.92219 0.84654 0.91332 0.90362 0.90343 0.95060 0.89757 0.88178 0.89245 0.88972 0.88272 0.85244 0.86342 0.86517 0.86411 0.86547 0.89942 0.91585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.52 13.65 55.43 0.76 -27.77 16 2 C 0.01 0.44 5.46 -17.82 -0.10 0.34 16 3 Si 1.07 25.68 29.90 -169.99 -5.08 20.60 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 6 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.60 -17.57 9.11 -34.44 -0.31 -17.89 16 8 H 0.05 1.34 7.74 -52.48 -0.41 0.93 16 9 C 0.01 0.33 4.54 -27.88 -0.13 0.21 16 10 C 0.07 1.60 5.42 -3.83 -0.02 1.58 16 11 N -0.69 -12.27 6.31 -106.60 -0.67 -12.94 16 12 C 0.09 1.27 2.56 -67.59 -0.17 1.09 16 13 H 0.03 0.53 7.80 -51.93 -0.41 0.12 16 14 C -0.10 -1.41 5.59 -26.65 -0.15 -1.56 16 15 C 0.06 0.67 5.34 -3.83 -0.02 0.65 16 16 N -0.50 -5.33 3.99 -220.13 -0.88 -6.21 16 17 C 0.01 0.11 4.12 -67.71 -0.28 -0.17 16 18 C -0.16 -1.32 8.87 -26.69 -0.24 -1.56 16 19 C -0.18 -1.46 9.70 -26.69 -0.26 -1.72 16 20 C 0.13 1.48 2.01 -68.87 -0.14 1.34 16 21 H 0.05 0.53 8.00 -51.93 -0.42 0.12 16 22 C -0.07 -0.77 4.03 -104.63 -0.42 -1.19 16 23 C -0.08 -0.83 7.32 -39.59 -0.29 -1.12 16 24 C -0.13 -1.14 10.05 -39.59 -0.40 -1.53 16 25 C -0.12 -1.07 10.05 -39.58 -0.40 -1.46 16 26 C -0.12 -1.12 10.05 -39.58 -0.40 -1.51 16 27 C -0.12 -1.15 9.67 -39.58 -0.38 -1.53 16 28 C -0.11 -1.34 4.62 -26.65 -0.12 -1.46 16 29 H 0.27 8.42 7.22 -40.82 -0.29 8.13 16 30 H 0.02 0.46 8.01 -51.93 -0.42 0.05 16 31 H 0.00 0.10 8.01 -51.93 -0.42 -0.32 16 32 H 0.01 0.32 8.06 -51.93 -0.42 -0.10 16 33 H 0.06 1.30 7.51 -51.93 -0.39 0.91 16 34 H 0.34 5.83 8.36 -39.29 -0.33 5.50 16 35 H 0.07 1.00 7.54 -51.93 -0.39 0.61 16 36 H 0.08 1.14 8.14 -51.92 -0.42 0.71 16 37 H 0.08 0.81 6.68 -51.93 -0.35 0.46 16 38 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.08 0.83 8.08 -51.93 -0.42 0.41 16 40 H 0.10 0.88 7.11 -51.93 -0.37 0.51 16 41 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.10 0.84 7.24 -51.93 -0.38 0.47 16 44 H 0.13 1.34 6.78 -52.49 -0.36 0.99 16 45 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 46 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 47 H 0.12 0.84 8.06 -52.48 -0.42 0.41 16 48 H 0.12 1.03 8.04 -52.49 -0.42 0.61 16 49 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 50 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 388.90 15.07 5.86 5.86 Total: -1.00 -30.87 388.90 -13.01 -43.88 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -8.77 Total: 4.07 kcal Atomic # 6 Polarization: -23.27 SS G_CDS: -4.22 Total: -27.49 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: -0.79 Total: -46.92 kcal Atomic # 14 Polarization: 25.68 SS G_CDS: -5.08 Total: 20.60 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.87 -13.01 -43.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602603570.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.614 kcal (2) G-P(sol) polarization free energy of solvation -30.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds