Wall clock time and date at job start Tue Mar 31 2020 10:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 N 1.46896 * 109.47029 * 180.02562 * 10 9 7 12 12 C 1.46901 * 110.99830 * 180.02562 * 11 10 9 13 13 H 1.09000 * 109.52178 * 325.11849 * 12 11 10 14 14 C 1.53117 * 109.52674 * 85.31417 * 12 11 10 15 15 C 1.53036 * 109.27848 * 177.55801 * 14 12 11 16 16 N 1.46854 * 109.52289 * 300.81978 * 15 14 12 17 17 C 1.46899 * 110.99883 * 185.83560 * 16 15 14 18 18 C 1.53002 * 117.49680 * 124.53851 * 17 16 15 19 19 C 1.53004 * 117.49747 * 55.87961 * 17 16 15 20 20 C 1.46850 * 111.19729 * 61.74689 * 16 15 14 21 21 H 1.08999 * 109.46186 * 58.26659 * 20 16 15 22 22 C 1.50698 * 109.45312 * 178.24701 * 20 16 15 23 23 C 1.38233 * 120.00371 * 39.77206 * 22 20 16 24 24 C 1.38227 * 119.99888 * 179.76929 * 23 22 20 25 25 C 1.38236 * 120.00323 * 0.49940 * 24 23 22 26 26 C 1.38236 * 119.99556 * 359.75498 * 25 24 23 27 27 C 1.38232 * 120.00286 * 359.97438 * 26 25 24 28 28 C 1.53042 * 109.51826 * 298.25638 * 20 16 15 29 29 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 31 31 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 32 32 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 33 33 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 34 34 H 1.00897 * 111.00046 * 56.04666 * 11 10 9 35 35 H 1.08992 * 109.50507 * 297.50192 * 14 12 11 36 36 H 1.09007 * 109.50185 * 57.62163 * 14 12 11 37 37 H 1.09000 * 109.46573 * 180.80769 * 15 14 12 38 38 H 1.09001 * 109.46351 * 60.83770 * 15 14 12 39 39 H 1.08997 * 115.55701 * 270.21315 * 17 16 15 40 40 H 1.09000 * 117.50065 * 0.02562 * 18 17 16 41 41 H 1.09002 * 117.49889 * 145.02386 * 18 17 16 42 42 H 1.08992 * 117.50504 * 214.97730 * 19 17 16 43 43 H 1.09000 * 117.49801 * 0.02562 * 19 17 16 44 44 H 1.07998 * 119.99573 * 359.97438 * 23 22 20 45 45 H 1.08001 * 119.99816 * 180.22833 * 24 23 22 46 46 H 1.07998 * 119.99863 * 179.72203 * 25 24 23 47 47 H 1.08005 * 119.99442 * 179.97438 * 26 25 24 48 48 H 1.08002 * 119.99841 * 179.97438 * 27 26 25 49 49 H 1.09003 * 109.50429 * 299.23608 * 28 20 16 50 50 H 1.09003 * 109.53037 * 179.14450 * 28 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5109 -4.9342 -0.0001 12 6 2.4354 -6.0758 0.0005 13 1 3.3200 -5.8285 -0.5863 14 6 2.8480 -6.3995 1.4391 15 6 3.7623 -7.6267 1.4385 16 7 3.0524 -8.7673 0.8456 17 6 3.8487 -9.9970 0.9538 18 6 3.1998 -11.2007 1.6401 19 6 4.3086 -10.4201 2.3504 20 6 2.6877 -8.4979 -0.5512 21 1 3.5878 -8.2796 -1.1259 22 6 2.0013 -9.7068 -1.1328 23 6 1.1035 -10.4270 -0.3673 24 6 0.4704 -11.5331 -0.9025 25 6 0.7427 -11.9251 -2.1998 26 6 1.6445 -11.2079 -2.9636 27 6 2.2735 -10.0985 -2.4303 28 6 1.7414 -7.2966 -0.6100 29 1 -0.4850 -0.8401 -0.0004 30 1 0.6241 -2.5566 0.8903 31 1 0.6247 -2.5571 -0.8897 32 1 2.8720 -3.6043 -0.8894 33 1 2.8720 -3.6043 0.8906 34 1 0.8747 -4.9841 -0.7817 35 1 3.3805 -5.5492 1.8650 36 1 1.9591 -6.6082 2.0344 37 1 4.0464 -7.8685 2.4627 38 1 4.6574 -7.4125 0.8544 39 1 4.5225 -10.1957 0.1204 40 1 2.1819 -11.0803 2.0109 41 1 3.4470 -12.1913 1.2584 42 1 5.2847 -10.8975 2.4358 43 1 4.0199 -9.7863 3.1889 44 1 0.8943 -10.1235 0.6478 45 1 -0.2338 -12.0936 -0.3056 46 1 0.2514 -12.7919 -2.6164 47 1 1.8576 -11.5145 -3.9771 48 1 2.9783 -9.5385 -3.0270 49 1 0.8350 -7.5193 -0.0469 50 1 1.4826 -7.0870 -1.6479 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602603570.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:29 Heat of formation + Delta-G solvation = 26.890964 kcal Electronic energy + Delta-G solvation = -26228.441261 eV Core-core repulsion = 22833.550856 eV Total energy + Delta-G solvation = -3394.890405 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.28234 -39.36260 -38.22485 -36.48469 -35.12617 -33.45359 -32.31333 -31.72506 -30.05497 -29.57443 -26.04254 -24.78291 -24.44563 -23.52868 -22.94732 -22.80401 -22.01923 -21.31085 -20.55765 -18.93738 -18.14358 -17.09010 -16.76557 -16.40536 -16.30037 -16.05345 -15.73273 -15.63970 -15.29716 -14.96812 -14.89286 -14.65864 -14.41281 -14.16806 -13.89492 -13.73909 -13.56060 -13.28296 -13.12773 -12.85772 -12.56550 -12.40069 -12.36825 -12.24703 -12.05819 -11.94350 -11.82050 -11.78109 -11.51842 -11.44434 -11.25243 -10.98137 -10.73188 -10.56371 -9.73772 -9.56537 -9.40943 -9.30999 -8.71545 -6.42082 0.47663 0.58700 1.51592 1.60543 1.80043 2.55303 2.64775 2.87738 2.96355 3.14212 3.21176 3.53575 3.82394 3.96657 4.02864 4.03606 4.08534 4.21132 4.22158 4.25071 4.30321 4.33246 4.35337 4.37299 4.44522 4.47523 4.54620 4.68833 4.74543 4.77496 4.79807 4.84060 4.85196 4.91223 5.03843 5.08310 5.12734 5.14878 5.23235 5.24952 5.33206 5.34293 5.41943 5.61599 5.69472 5.72552 5.89444 6.06726 6.13003 6.16951 6.19014 6.19752 6.39564 6.57081 7.40755 8.69774 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.019267 B = 0.002603 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.942638 B =10753.597880 C =11678.019638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.039 4.039 3 Si 1.120 2.880 4 H -0.282 1.282 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.622 4.622 8 H 0.051 0.949 9 C 0.017 3.983 10 C 0.094 3.906 11 N -0.690 5.690 12 C 0.089 3.911 13 H 0.031 0.969 14 C -0.099 4.099 15 C 0.067 3.933 16 N -0.504 5.504 17 C 0.001 3.999 18 C -0.151 4.151 19 C -0.170 4.170 20 C 0.141 3.859 21 H 0.043 0.957 22 C -0.084 4.084 23 C -0.090 4.090 24 C -0.131 4.131 25 C -0.125 4.125 26 C -0.129 4.129 27 C -0.128 4.128 28 C -0.097 4.097 29 H 0.255 0.745 30 H -0.009 1.009 31 H -0.013 1.013 32 H 0.015 0.985 33 H 0.057 0.943 34 H 0.338 0.662 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.091 0.909 38 H 0.031 0.969 39 H 0.082 0.918 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.106 0.894 43 H 0.096 0.904 44 H 0.122 0.878 45 H 0.135 0.865 46 H 0.139 0.861 47 H 0.136 0.864 48 H 0.122 0.878 49 H 0.073 0.927 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.735 -28.891 -1.247 29.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.236 4.236 3 Si 0.940 3.060 4 H -0.208 1.208 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.660 4.660 8 H 0.069 0.931 9 C -0.020 4.020 10 C -0.035 4.035 11 N -0.321 5.321 12 C -0.021 4.021 13 H 0.049 0.951 14 C -0.138 4.138 15 C -0.060 4.060 16 N -0.228 5.228 17 C -0.108 4.108 18 C -0.188 4.188 19 C -0.207 4.207 20 C 0.032 3.968 21 H 0.061 0.939 22 C -0.084 4.084 23 C -0.108 4.108 24 C -0.149 4.149 25 C -0.143 4.143 26 C -0.147 4.147 27 C -0.147 4.147 28 C -0.135 4.135 29 H 0.065 0.935 30 H 0.010 0.990 31 H 0.006 0.994 32 H 0.033 0.967 33 H 0.075 0.925 34 H 0.156 0.844 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.109 0.891 38 H 0.050 0.950 39 H 0.099 0.901 40 H 0.113 0.887 41 H 0.117 0.883 42 H 0.124 0.876 43 H 0.115 0.885 44 H 0.140 0.860 45 H 0.153 0.847 46 H 0.157 0.843 47 H 0.154 0.846 48 H 0.140 0.860 49 H 0.091 0.909 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.037 -27.322 -0.296 28.215 hybrid contribution 0.919 -1.187 -1.423 2.068 sum 7.956 -28.509 -1.719 29.648 Atomic orbital electron populations 1.70909 1.07976 1.29909 1.48545 1.27502 0.96606 1.06940 0.92577 0.82920 0.74120 0.70880 0.78093 1.20763 1.19289 1.19312 1.22433 0.94683 0.93378 1.55511 0.93093 1.19083 0.94965 0.93709 0.94277 1.21644 0.95207 0.88144 0.98493 1.60540 1.20166 1.01495 1.49917 1.21593 0.93664 0.90041 0.96804 0.95073 1.21524 0.99809 0.96528 0.95919 1.22018 0.94256 0.89379 1.00393 1.61711 1.42411 1.02231 1.16464 1.22279 0.99978 0.92046 0.96458 1.23065 0.98145 0.94983 1.02650 1.23160 0.99806 1.03492 0.94282 1.20343 0.96010 0.92257 0.88172 0.93889 1.19652 0.98224 0.96204 0.94363 1.21045 0.95189 0.94837 0.99718 1.21402 1.00105 0.97246 0.96107 1.21429 0.98084 1.00341 0.94476 1.21322 0.97285 0.95462 1.00654 1.21178 1.00756 0.97750 0.94977 1.21690 0.98883 0.92385 1.00559 0.93517 0.99032 0.99445 0.96719 0.92451 0.84390 0.92497 0.91438 0.89113 0.95046 0.90053 0.88676 0.88340 0.87571 0.88536 0.85973 0.84706 0.84343 0.84576 0.86027 0.90852 0.91461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.64 13.65 21.45 0.29 -59.35 16 2 C -0.04 -2.31 5.46 84.65 0.46 -1.85 16 3 Si 1.12 51.03 29.90 68.60 2.05 53.08 16 4 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 5 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 6 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 7 C -0.62 -36.63 9.11 25.60 0.23 -36.39 16 8 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 9 C 0.02 0.93 4.54 29.85 0.14 1.06 16 10 C 0.09 4.11 5.42 86.30 0.47 4.57 16 11 N -0.69 -25.13 6.31 -491.17 -3.10 -28.23 16 12 C 0.09 2.59 2.56 44.99 0.12 2.71 16 13 H 0.03 0.95 7.80 -2.39 -0.02 0.93 16 14 C -0.10 -2.70 5.59 30.65 0.17 -2.53 16 15 C 0.07 1.46 5.34 86.32 0.46 1.92 16 16 N -0.50 -10.33 3.99 -850.36 -3.39 -13.72 16 17 C 0.00 0.02 4.12 44.92 0.18 0.20 16 18 C -0.15 -2.27 8.87 30.62 0.27 -2.00 16 19 C -0.17 -2.46 9.70 30.62 0.30 -2.16 16 20 C 0.14 3.04 2.01 44.19 0.09 3.13 16 21 H 0.04 0.96 8.00 -2.39 -0.02 0.94 16 22 C -0.08 -1.69 4.03 -19.87 -0.08 -1.77 16 23 C -0.09 -1.71 7.32 22.27 0.16 -1.55 16 24 C -0.13 -2.12 10.05 22.27 0.22 -1.90 16 25 C -0.13 -1.88 10.05 22.27 0.22 -1.66 16 26 C -0.13 -2.06 10.05 22.27 0.22 -1.84 16 27 C -0.13 -2.37 9.67 22.27 0.22 -2.15 16 28 C -0.10 -2.42 4.62 30.65 0.14 -2.28 16 29 H 0.26 16.54 7.22 -92.71 -0.67 15.87 16 30 H -0.01 -0.51 8.01 -2.39 -0.02 -0.53 16 31 H -0.01 -0.73 8.01 -2.38 -0.02 -0.75 16 32 H 0.01 0.64 8.06 -2.39 -0.02 0.62 16 33 H 0.06 2.52 7.51 -2.39 -0.02 2.50 16 34 H 0.34 12.00 8.36 -89.70 -0.75 11.25 16 35 H 0.06 1.67 7.54 -2.39 -0.02 1.65 16 36 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 37 H 0.09 1.76 6.68 -2.39 -0.02 1.74 16 38 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.08 1.50 8.08 -2.39 -0.02 1.48 16 40 H 0.09 1.55 7.11 -2.39 -0.02 1.53 16 41 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.10 1.47 7.24 -2.39 -0.02 1.45 16 44 H 0.12 2.47 6.78 -2.91 -0.02 2.45 16 45 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 46 H 0.14 1.43 8.06 -2.91 -0.02 1.41 16 47 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 48 H 0.12 2.03 8.04 -2.91 -0.02 2.01 16 49 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 50 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -66.63 388.90 0.10 -66.53 By element: Atomic # 1 Polarization: 25.93 SS G_CDS: 0.25 Total: 26.17 kcal Atomic # 6 Polarization: -48.48 SS G_CDS: 4.00 Total: -44.48 kcal Atomic # 7 Polarization: -95.10 SS G_CDS: -6.20 Total: -101.30 kcal Atomic # 14 Polarization: 51.03 SS G_CDS: 2.05 Total: 53.08 kcal Total: -66.63 0.10 -66.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602603570.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.419 kcal (2) G-P(sol) polarization free energy of solvation -66.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds