Wall clock time and date at job start Tue Mar 31 2020 10:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00291 * 2 1 4 4 H 1.48494 * 109.47051 * 239.99903 * 3 2 1 5 5 H 1.48501 * 109.46677 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47226 * 119.99318 * 3 2 1 7 7 C 1.37878 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00179 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99714 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46807 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.46916 * 179.97438 * 10 9 7 12 12 C 1.46905 * 110.99870 * 180.02562 * 11 10 9 13 13 H 1.09002 * 109.52446 * 35.12803 * 12 11 10 14 14 C 1.53119 * 109.52355 * 275.00361 * 12 11 10 15 15 C 1.53037 * 109.27564 * 297.74955 * 14 12 11 16 16 N 1.46851 * 109.52474 * 300.81874 * 15 14 12 17 17 C 1.46896 * 111.00062 * 185.84024 * 16 15 14 18 18 C 1.53002 * 117.49948 * 124.67358 * 17 16 15 19 19 C 1.52996 * 117.49824 * 56.04817 * 17 16 15 20 20 C 1.46853 * 111.19547 * 61.74562 * 16 15 14 21 21 H 1.08995 * 109.46500 * 58.27351 * 20 16 15 22 22 C 1.50695 * 109.46209 * 178.24585 * 20 16 15 23 23 C 1.38233 * 120.00346 * 39.72006 * 22 20 16 24 24 C 1.38238 * 120.00270 * 179.78970 * 23 22 20 25 25 C 1.38240 * 119.99676 * 0.46961 * 24 23 22 26 26 C 1.38234 * 119.99881 * 359.76384 * 25 24 23 27 27 C 1.38236 * 120.00492 * 0.02562 * 26 25 24 28 28 C 1.53041 * 109.52038 * 298.25664 * 20 16 15 29 29 H 0.97007 * 120.00038 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.47327 * 60.00338 * 9 7 2 31 31 H 1.08996 * 109.47062 * 299.99195 * 9 7 2 32 32 H 1.09004 * 109.46889 * 60.00274 * 10 9 7 33 33 H 1.08995 * 109.47384 * 299.99914 * 10 9 7 34 34 H 1.00901 * 111.00067 * 303.95263 * 11 10 9 35 35 H 1.08998 * 109.50231 * 57.68665 * 14 12 11 36 36 H 1.08999 * 109.50294 * 177.77020 * 14 12 11 37 37 H 1.08999 * 109.46727 * 60.83775 * 15 14 12 38 38 H 1.09001 * 109.46283 * 180.81697 * 15 14 12 39 39 H 1.09003 * 115.55208 * 270.37564 * 17 16 15 40 40 H 1.08998 * 117.49507 * 359.97438 * 18 17 16 41 41 H 1.08996 * 117.49889 * 145.01822 * 18 17 16 42 42 H 1.09006 * 117.49610 * 214.97182 * 19 17 16 43 43 H 1.08991 * 117.50012 * 359.97438 * 19 17 16 44 44 H 1.07997 * 120.00091 * 0.02562 * 23 22 20 45 45 H 1.07993 * 120.00332 * 180.25455 * 24 23 22 46 46 H 1.07997 * 120.00005 * 179.79098 * 25 24 23 47 47 H 1.08004 * 119.99609 * 180.02562 * 26 25 24 48 48 H 1.07993 * 120.00417 * 179.97438 * 27 26 25 49 49 H 1.08998 * 109.50578 * 299.24040 * 28 20 16 50 50 H 1.08998 * 109.50178 * 179.11677 * 28 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5106 -4.9343 0.0012 12 6 2.4351 -6.0760 0.0018 13 1 3.3173 -5.8300 0.5928 14 6 2.8550 -6.3952 -1.4357 15 6 1.6201 -6.7971 -2.2453 16 7 0.9895 -7.9712 -1.6284 17 6 -0.1179 -8.4693 -2.4551 18 6 -0.0739 -9.9370 -2.8849 19 6 0.1931 -8.8317 -3.9086 20 6 0.5354 -7.6743 -0.2638 21 1 -0.1690 -6.8429 -0.2882 22 6 -0.1422 -8.8894 0.3154 23 6 0.3736 -10.1490 0.0746 24 6 -0.2455 -11.2633 0.6095 25 6 -1.3861 -11.1186 1.3771 26 6 -1.9047 -9.8592 1.6138 27 6 -1.2831 -8.7446 1.0826 28 6 1.7380 -7.2985 0.6050 29 1 -0.4850 0.8401 -0.0004 30 1 0.6246 -2.5571 -0.8897 31 1 0.6240 -2.5567 0.8903 32 1 2.8718 -3.6043 0.8906 33 1 2.8718 -3.6044 -0.8894 34 1 0.8744 -4.9841 0.7828 35 1 3.3137 -5.5144 -1.8849 36 1 3.5714 -7.2166 -1.4316 37 1 0.9106 -5.9698 -2.2605 38 1 1.9177 -7.0391 -3.2656 39 1 -1.0952 -8.0359 -2.2425 40 1 0.7769 -10.5328 -2.5546 41 1 -1.0224 -10.4695 -2.9550 42 1 -0.5798 -8.6371 -4.6522 43 1 1.2193 -8.7001 -4.2516 44 1 1.2625 -10.2625 -0.5282 45 1 0.1598 -12.2471 0.4248 46 1 -1.8717 -11.9893 1.7922 47 1 -2.7955 -9.7462 2.2139 48 1 -1.6884 -7.7608 1.2672 49 1 2.4363 -8.1346 0.6411 50 1 1.3987 -7.0631 1.6137 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602603571.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:33 Heat of formation + Delta-G solvation = 49.045911 kcal Electronic energy + Delta-G solvation = -26652.622262 eV Core-core repulsion = 23258.692567 eV Total energy + Delta-G solvation = -3393.929695 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.27667 -38.41993 -37.01262 -34.68054 -33.00384 -32.26506 -30.90617 -30.85919 -29.02975 -28.05108 -24.42076 -23.70396 -23.51463 -22.64582 -22.13899 -21.13361 -20.50231 -20.30677 -18.78071 -17.26975 -16.30095 -16.10890 -15.55149 -15.40699 -15.11963 -14.87138 -14.49962 -14.14652 -14.07226 -13.82313 -13.48742 -13.29485 -13.10687 -12.84864 -12.62755 -12.39296 -12.28684 -11.98894 -11.55587 -11.46210 -11.34319 -11.14160 -11.10958 -10.92043 -10.86539 -10.64820 -10.51732 -10.42213 -10.29940 -9.98347 -9.85316 -9.34736 -9.15334 -8.90605 -8.67561 -8.35967 -8.23986 -7.74166 -6.00183 -4.02740 1.32992 1.41482 3.32838 3.37236 3.39562 3.66504 3.83460 3.86939 4.43149 4.60594 4.74710 4.89256 4.93183 4.95739 4.97158 5.03207 5.10334 5.16847 5.25136 5.35789 5.38159 5.43208 5.48180 5.55708 5.60593 5.65387 5.67835 5.78946 5.87844 5.92359 5.98838 6.04071 6.09091 6.13093 6.15357 6.20971 6.29391 6.32000 6.43202 6.46012 6.48747 6.50089 6.65490 6.99339 6.99693 7.22297 7.26472 7.50264 7.73045 7.82658 7.96500 8.08434 8.43605 9.04458 9.61059 11.11164 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.017788 B = 0.002935 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.673878 B = 9536.160439 C =10163.888182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.027 3.973 10 C 0.067 3.933 11 N -0.685 5.685 12 C 0.082 3.918 13 H 0.041 0.959 14 C -0.101 4.101 15 C 0.066 3.934 16 N -0.504 5.504 17 C 0.017 3.983 18 C -0.161 4.161 19 C -0.179 4.179 20 C 0.135 3.865 21 H 0.063 0.937 22 C -0.073 4.073 23 C -0.086 4.086 24 C -0.129 4.129 25 C -0.126 4.126 26 C -0.125 4.125 27 C -0.115 4.115 28 C -0.105 4.105 29 H 0.261 0.739 30 H 0.023 0.977 31 H 0.012 0.988 32 H 0.014 0.986 33 H 0.057 0.943 34 H 0.334 0.666 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.056 0.944 38 H 0.066 0.934 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.097 0.903 44 H 0.127 0.873 45 H 0.116 0.884 46 H 0.115 0.885 47 H 0.117 0.883 48 H 0.120 0.880 49 H 0.072 0.928 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.687 -24.030 -1.450 24.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.071 0.929 9 C -0.010 4.010 10 C -0.061 4.061 11 N -0.317 5.317 12 C -0.029 4.029 13 H 0.059 0.941 14 C -0.140 4.140 15 C -0.061 4.061 16 N -0.228 5.228 17 C -0.091 4.091 18 C -0.199 4.199 19 C -0.216 4.216 20 C 0.026 3.974 21 H 0.081 0.919 22 C -0.073 4.073 23 C -0.104 4.104 24 C -0.147 4.147 25 C -0.144 4.144 26 C -0.143 4.143 27 C -0.134 4.134 28 C -0.143 4.143 29 H 0.070 0.930 30 H 0.042 0.958 31 H 0.030 0.970 32 H 0.032 0.968 33 H 0.076 0.924 34 H 0.152 0.848 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.103 0.897 40 H 0.115 0.885 41 H 0.106 0.894 42 H 0.109 0.891 43 H 0.115 0.885 44 H 0.145 0.855 45 H 0.134 0.866 46 H 0.133 0.867 47 H 0.135 0.865 48 H 0.138 0.862 49 H 0.091 0.909 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.555 -24.256 -2.107 24.354 hybrid contribution 0.100 1.646 0.924 1.890 sum -0.455 -22.611 -1.182 22.646 Atomic orbital electron populations 1.69960 1.06032 1.26681 1.50610 1.24995 0.94831 0.99186 0.95301 0.86659 0.79582 0.83160 0.78598 1.20224 1.21273 1.20294 1.21146 0.92929 0.91080 1.50941 0.92865 1.19038 0.93980 0.90466 0.97519 1.22178 0.96888 0.88528 0.98492 1.60661 1.19655 1.01946 1.49435 1.21557 0.94555 0.90731 0.96017 0.94090 1.21547 0.96883 1.00418 0.95141 1.21945 0.96339 0.91017 0.96807 1.61771 1.26964 1.33245 1.00869 1.22255 0.94192 0.98076 0.94624 1.23046 1.02649 0.91513 1.02701 1.23061 1.02713 1.04030 0.91823 1.20424 0.95554 0.93368 0.88013 0.91869 1.19858 0.95057 0.94921 0.97497 1.21035 0.99813 0.91503 0.98026 1.21132 0.96388 0.98565 0.98624 1.21088 0.96786 0.97132 0.99411 1.21060 1.00079 0.92673 1.00465 1.21094 0.95451 0.98858 0.97958 1.21781 0.96789 0.97893 0.97812 0.92953 0.95828 0.96974 0.96793 0.92410 0.84795 0.91349 0.91930 0.92592 0.91558 0.89697 0.88480 0.89423 0.89057 0.88484 0.85476 0.86602 0.86700 0.86455 0.86215 0.90922 0.91616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.98 13.29 55.43 0.74 -26.25 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.03 0.71 5.23 -27.88 -0.15 0.56 16 10 C 0.07 1.39 5.42 -3.82 -0.02 1.37 16 11 N -0.69 -11.63 4.99 -106.59 -0.53 -12.17 16 12 C 0.08 1.15 2.84 -67.59 -0.19 0.96 16 13 H 0.04 0.60 7.80 -51.93 -0.41 0.20 16 14 C -0.10 -1.35 5.70 -26.65 -0.15 -1.50 16 15 C 0.07 0.87 5.19 -3.83 -0.02 0.85 16 16 N -0.50 -6.01 3.99 -220.14 -0.88 -6.89 16 17 C 0.02 0.20 4.12 -67.72 -0.28 -0.08 16 18 C -0.16 -1.55 8.86 -26.73 -0.24 -1.79 16 19 C -0.18 -1.77 9.70 -26.73 -0.26 -2.03 16 20 C 0.13 1.65 1.87 -68.87 -0.13 1.52 16 21 H 0.06 0.90 7.52 -51.93 -0.39 0.51 16 22 C -0.07 -0.83 4.03 -104.62 -0.42 -1.26 16 23 C -0.09 -0.90 7.31 -39.58 -0.29 -1.19 16 24 C -0.13 -1.23 10.05 -39.58 -0.40 -1.63 16 25 C -0.13 -1.19 10.05 -39.58 -0.40 -1.58 16 26 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 27 C -0.12 -1.29 9.67 -39.58 -0.38 -1.67 16 28 C -0.10 -1.29 4.74 -26.65 -0.13 -1.41 16 29 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.01 0.29 8.06 -51.93 -0.42 -0.13 16 33 H 0.06 1.20 7.41 -51.93 -0.38 0.82 16 34 H 0.33 5.61 8.30 -39.29 -0.33 5.29 16 35 H 0.07 0.98 7.41 -51.93 -0.38 0.60 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.89 7.69 -51.93 -0.40 0.49 16 38 H 0.07 0.81 6.69 -51.93 -0.35 0.47 16 39 H 0.09 1.06 8.08 -51.93 -0.42 0.64 16 40 H 0.10 0.93 7.10 -51.93 -0.37 0.56 16 41 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.10 0.96 7.25 -51.93 -0.38 0.59 16 44 H 0.13 1.34 6.77 -52.49 -0.36 0.99 16 45 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 46 H 0.11 0.85 8.06 -52.49 -0.42 0.42 16 47 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 48 H 0.12 1.29 8.04 -52.49 -0.42 0.87 16 49 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 50 H 0.07 0.80 8.08 -51.93 -0.42 0.38 16 LS Contribution 387.81 15.07 5.84 5.84 Total: -1.00 -29.35 387.81 -12.87 -42.22 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -8.76 Total: 4.61 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: -4.26 Total: -24.09 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: -0.67 Total: -45.30 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -29.35 -12.87 -42.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602603571.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.268 kcal (2) G-P(sol) polarization free energy of solvation -29.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds