Wall clock time and date at job start Tue Mar 31 2020 10:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00291 * 2 1 4 4 H 1.48494 * 109.47051 * 239.99903 * 3 2 1 5 5 H 1.48501 * 109.46677 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47226 * 119.99318 * 3 2 1 7 7 C 1.37878 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00179 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99714 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46807 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.46916 * 179.97438 * 10 9 7 12 12 C 1.46905 * 110.99870 * 180.02562 * 11 10 9 13 13 H 1.09002 * 109.52446 * 35.12803 * 12 11 10 14 14 C 1.53119 * 109.52355 * 275.00361 * 12 11 10 15 15 C 1.53037 * 109.27564 * 297.74955 * 14 12 11 16 16 N 1.46851 * 109.52474 * 300.81874 * 15 14 12 17 17 C 1.46896 * 111.00062 * 185.84024 * 16 15 14 18 18 C 1.53002 * 117.49948 * 124.67358 * 17 16 15 19 19 C 1.52996 * 117.49824 * 56.04817 * 17 16 15 20 20 C 1.46853 * 111.19547 * 61.74562 * 16 15 14 21 21 H 1.08995 * 109.46500 * 58.27351 * 20 16 15 22 22 C 1.50695 * 109.46209 * 178.24585 * 20 16 15 23 23 C 1.38233 * 120.00346 * 39.72006 * 22 20 16 24 24 C 1.38238 * 120.00270 * 179.78970 * 23 22 20 25 25 C 1.38240 * 119.99676 * 0.46961 * 24 23 22 26 26 C 1.38234 * 119.99881 * 359.76384 * 25 24 23 27 27 C 1.38236 * 120.00492 * 0.02562 * 26 25 24 28 28 C 1.53041 * 109.52038 * 298.25664 * 20 16 15 29 29 H 0.97007 * 120.00038 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.47327 * 60.00338 * 9 7 2 31 31 H 1.08996 * 109.47062 * 299.99195 * 9 7 2 32 32 H 1.09004 * 109.46889 * 60.00274 * 10 9 7 33 33 H 1.08995 * 109.47384 * 299.99914 * 10 9 7 34 34 H 1.00901 * 111.00067 * 303.95263 * 11 10 9 35 35 H 1.08998 * 109.50231 * 57.68665 * 14 12 11 36 36 H 1.08999 * 109.50294 * 177.77020 * 14 12 11 37 37 H 1.08999 * 109.46727 * 60.83775 * 15 14 12 38 38 H 1.09001 * 109.46283 * 180.81697 * 15 14 12 39 39 H 1.09003 * 115.55208 * 270.37564 * 17 16 15 40 40 H 1.08998 * 117.49507 * 359.97438 * 18 17 16 41 41 H 1.08996 * 117.49889 * 145.01822 * 18 17 16 42 42 H 1.09006 * 117.49610 * 214.97182 * 19 17 16 43 43 H 1.08991 * 117.50012 * 359.97438 * 19 17 16 44 44 H 1.07997 * 120.00091 * 0.02562 * 23 22 20 45 45 H 1.07993 * 120.00332 * 180.25455 * 24 23 22 46 46 H 1.07997 * 120.00005 * 179.79098 * 25 24 23 47 47 H 1.08004 * 119.99609 * 180.02562 * 26 25 24 48 48 H 1.07993 * 120.00417 * 179.97438 * 27 26 25 49 49 H 1.08998 * 109.50578 * 299.24040 * 28 20 16 50 50 H 1.08998 * 109.50178 * 179.11677 * 28 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5106 -4.9343 0.0012 12 6 2.4351 -6.0760 0.0018 13 1 3.3173 -5.8300 0.5928 14 6 2.8550 -6.3952 -1.4357 15 6 1.6201 -6.7971 -2.2453 16 7 0.9895 -7.9712 -1.6284 17 6 -0.1179 -8.4693 -2.4551 18 6 -0.0739 -9.9370 -2.8849 19 6 0.1931 -8.8317 -3.9086 20 6 0.5354 -7.6743 -0.2638 21 1 -0.1690 -6.8429 -0.2882 22 6 -0.1422 -8.8894 0.3154 23 6 0.3736 -10.1490 0.0746 24 6 -0.2455 -11.2633 0.6095 25 6 -1.3861 -11.1186 1.3771 26 6 -1.9047 -9.8592 1.6138 27 6 -1.2831 -8.7446 1.0826 28 6 1.7380 -7.2985 0.6050 29 1 -0.4850 0.8401 -0.0004 30 1 0.6246 -2.5571 -0.8897 31 1 0.6240 -2.5567 0.8903 32 1 2.8718 -3.6043 0.8906 33 1 2.8718 -3.6044 -0.8894 34 1 0.8744 -4.9841 0.7828 35 1 3.3137 -5.5144 -1.8849 36 1 3.5714 -7.2166 -1.4316 37 1 0.9106 -5.9698 -2.2605 38 1 1.9177 -7.0391 -3.2656 39 1 -1.0952 -8.0359 -2.2425 40 1 0.7769 -10.5328 -2.5546 41 1 -1.0224 -10.4695 -2.9550 42 1 -0.5798 -8.6371 -4.6522 43 1 1.2193 -8.7001 -4.2516 44 1 1.2625 -10.2625 -0.5282 45 1 0.1598 -12.2471 0.4248 46 1 -1.8717 -11.9893 1.7922 47 1 -2.7955 -9.7462 2.2139 48 1 -1.6884 -7.7608 1.2672 49 1 2.4363 -8.1346 0.6411 50 1 1.3987 -7.0631 1.6137 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602603571.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:32 Heat of formation + Delta-G solvation = 33.938946 kcal Electronic energy + Delta-G solvation = -26653.277349 eV Core-core repulsion = 23258.692567 eV Total energy + Delta-G solvation = -3394.584782 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.23201 -39.32716 -38.09667 -36.14034 -34.79175 -33.33167 -32.35639 -31.67618 -30.00570 -29.71063 -26.14991 -24.82593 -24.65006 -23.48603 -22.94287 -22.41786 -21.99267 -21.25601 -19.94149 -18.45596 -18.12223 -16.99238 -16.85636 -16.50274 -16.33636 -16.03374 -15.89339 -15.40885 -15.21543 -14.83489 -14.63491 -14.41682 -14.25157 -14.08783 -14.03134 -13.53593 -13.27213 -13.25409 -13.08523 -12.86904 -12.69508 -12.43343 -12.29713 -12.24041 -12.13711 -11.98002 -11.74497 -11.53641 -11.48463 -11.35236 -11.20995 -11.08203 -10.85866 -10.57542 -9.69217 -9.50521 -9.38999 -9.06006 -8.21853 -6.33548 0.53458 0.62943 1.38603 1.41931 1.49845 2.39002 2.76326 2.97232 3.03503 3.11509 3.36857 3.65034 3.93056 4.05764 4.08764 4.12122 4.15809 4.25462 4.27591 4.36295 4.38882 4.41919 4.51643 4.55219 4.59161 4.66433 4.75678 4.80655 4.81809 4.84492 4.88075 4.97462 5.01822 5.07926 5.13265 5.16146 5.18415 5.21120 5.29233 5.33635 5.37056 5.45238 5.66293 5.67032 5.73080 5.78305 5.80938 6.14086 6.17672 6.24902 6.27576 6.31883 6.53744 6.83890 7.35863 8.90054 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.017788 B = 0.002935 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.673878 B = 9536.160439 C =10163.888182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.060 0.940 9 C 0.036 3.964 10 C 0.088 3.912 11 N -0.686 5.686 12 C 0.082 3.918 13 H 0.043 0.957 14 C -0.098 4.098 15 C 0.071 3.929 16 N -0.492 5.492 17 C -0.003 4.003 18 C -0.142 4.142 19 C -0.173 4.173 20 C 0.140 3.860 21 H 0.034 0.966 22 C -0.083 4.083 23 C -0.088 4.088 24 C -0.128 4.128 25 C -0.127 4.127 26 C -0.131 4.131 27 C -0.134 4.134 28 C -0.096 4.096 29 H 0.264 0.736 30 H -0.009 1.009 31 H -0.012 1.012 32 H 0.016 0.984 33 H 0.057 0.943 34 H 0.334 0.666 35 H 0.056 0.944 36 H 0.083 0.917 37 H 0.021 0.979 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.103 0.897 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.100 0.900 44 H 0.129 0.871 45 H 0.140 0.860 46 H 0.139 0.861 47 H 0.132 0.868 48 H 0.111 0.889 49 H 0.086 0.914 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.624 -25.962 -1.462 26.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.078 0.922 9 C -0.001 4.001 10 C -0.041 4.041 11 N -0.318 5.318 12 C -0.028 4.028 13 H 0.061 0.939 14 C -0.136 4.136 15 C -0.056 4.056 16 N -0.216 5.216 17 C -0.112 4.112 18 C -0.180 4.180 19 C -0.210 4.210 20 C 0.031 3.969 21 H 0.052 0.948 22 C -0.083 4.083 23 C -0.106 4.106 24 C -0.146 4.146 25 C -0.145 4.145 26 C -0.149 4.149 27 C -0.152 4.152 28 C -0.134 4.134 29 H 0.072 0.928 30 H 0.009 0.991 31 H 0.006 0.994 32 H 0.034 0.966 33 H 0.075 0.925 34 H 0.152 0.848 35 H 0.074 0.926 36 H 0.102 0.898 37 H 0.040 0.960 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.122 0.878 41 H 0.114 0.886 42 H 0.117 0.883 43 H 0.118 0.882 44 H 0.147 0.853 45 H 0.158 0.842 46 H 0.157 0.843 47 H 0.150 0.850 48 H 0.129 0.871 49 H 0.105 0.895 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.763 -26.213 -2.120 26.309 hybrid contribution -0.390 2.180 0.928 2.401 sum 0.373 -24.033 -1.192 24.065 Atomic orbital electron populations 1.70105 1.07854 1.27848 1.51395 1.25978 0.95754 1.03385 0.94598 0.85486 0.78267 0.77982 0.79231 1.19124 1.20796 1.19090 1.21595 0.93515 0.92311 1.50980 0.92183 1.18870 0.94215 0.92370 0.94692 1.21765 0.95406 0.88429 0.98451 1.60579 1.20050 1.01557 1.49619 1.21647 0.94049 0.90145 0.96953 0.93942 1.21527 0.97180 1.00631 0.94257 1.21856 0.95617 0.90495 0.97681 1.61843 1.27082 1.31975 1.00688 1.22238 0.93223 0.99793 0.95930 1.23049 1.03230 0.90414 1.01304 1.23122 1.03108 1.03670 0.91130 1.20295 0.94955 0.93180 0.88420 0.94796 1.19763 0.95459 0.94901 0.98174 1.21068 0.99987 0.91322 0.98272 1.21424 0.96118 0.99237 0.97803 1.21412 0.96655 0.97541 0.98849 1.21292 1.00517 0.92683 1.00388 1.21174 0.95998 0.99183 0.98877 1.21711 0.96850 0.97242 0.97590 0.92759 0.99087 0.99377 0.96613 0.92470 0.84817 0.92556 0.89837 0.96014 0.90384 0.91620 0.87835 0.88636 0.88346 0.88198 0.85275 0.84233 0.84303 0.85047 0.87064 0.89507 0.91627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.72 13.29 21.45 0.28 -57.43 16 2 C 0.00 0.05 5.46 84.66 0.46 0.51 16 3 Si 0.97 44.72 29.54 68.60 2.03 46.75 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 7 C -0.55 -31.61 9.11 25.60 0.23 -31.37 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.29 16 9 C 0.04 1.95 5.23 29.85 0.16 2.11 16 10 C 0.09 3.75 5.42 86.30 0.47 4.22 16 11 N -0.69 -24.26 4.99 -491.13 -2.45 -26.71 16 12 C 0.08 2.29 2.84 44.99 0.13 2.42 16 13 H 0.04 1.21 7.80 -2.39 -0.02 1.19 16 14 C -0.10 -2.55 5.70 30.65 0.17 -2.37 16 15 C 0.07 1.89 5.19 86.33 0.45 2.33 16 16 N -0.49 -11.62 3.99 -850.38 -3.39 -15.01 16 17 C 0.00 -0.07 4.12 44.92 0.19 0.12 16 18 C -0.14 -2.49 8.86 30.60 0.27 -2.22 16 19 C -0.17 -3.20 9.70 30.60 0.30 -2.90 16 20 C 0.14 3.50 1.87 44.19 0.08 3.58 16 21 H 0.03 1.05 7.52 -2.39 -0.02 1.03 16 22 C -0.08 -1.86 4.03 -19.87 -0.08 -1.94 16 23 C -0.09 -1.71 7.31 22.27 0.16 -1.54 16 24 C -0.13 -2.09 10.05 22.27 0.22 -1.86 16 25 C -0.13 -2.06 10.05 22.27 0.22 -1.84 16 26 C -0.13 -2.48 10.05 22.27 0.22 -2.25 16 27 C -0.13 -3.02 9.67 22.27 0.22 -2.81 16 28 C -0.10 -2.32 4.74 30.65 0.15 -2.17 16 29 H 0.26 15.34 8.31 -92.70 -0.77 14.57 16 30 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 31 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 32 H 0.02 0.66 8.06 -2.39 -0.02 0.64 16 33 H 0.06 2.43 7.41 -2.39 -0.02 2.41 16 34 H 0.33 11.84 8.30 -89.69 -0.74 11.10 16 35 H 0.06 1.61 7.41 -2.39 -0.02 1.59 16 36 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.02 0.72 7.69 -2.39 -0.02 0.70 16 38 H 0.08 1.87 6.69 -2.39 -0.02 1.86 16 39 H 0.07 1.73 8.08 -2.39 -0.02 1.71 16 40 H 0.10 1.71 7.10 -2.39 -0.02 1.70 16 41 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 43 H 0.10 1.81 7.25 -2.39 -0.02 1.80 16 44 H 0.13 2.43 6.77 -2.91 -0.02 2.41 16 45 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 46 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 47 H 0.13 2.02 8.06 -2.91 -0.02 2.00 16 48 H 0.11 2.59 8.04 -2.91 -0.02 2.56 16 49 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 50 H 0.07 1.59 8.08 -2.39 -0.02 1.57 16 Total: -1.00 -64.46 387.81 0.64 -63.82 By element: Atomic # 1 Polarization: 26.44 SS G_CDS: 0.15 Total: 26.59 kcal Atomic # 6 Polarization: -42.02 SS G_CDS: 4.02 Total: -38.00 kcal Atomic # 7 Polarization: -93.60 SS G_CDS: -5.56 Total: -99.16 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -64.46 0.64 -63.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602603571.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.754 kcal (2) G-P(sol) polarization free energy of solvation -64.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds