Wall clock time and date at job start Tue Mar 31 2020 11:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38308 * 119.96175 * 2 1 4 4 C 1.38260 * 120.15165 * 180.27584 * 3 2 1 5 5 C 1.38131 * 120.06966 * 359.44622 * 4 3 2 6 6 C 1.38882 * 119.92773 * 0.27730 * 5 4 3 7 7 N 1.39674 * 120.07482 * 179.97438 * 6 5 4 8 8 C 1.46499 * 120.00175 * 359.97438 * 7 6 5 9 9 C 1.53109 * 109.52382 * 274.87420 * 8 7 6 10 10 C 1.53043 * 109.27254 * 182.50221 * 9 8 7 11 11 N 1.46844 * 109.57943 * 59.08624 * 10 9 8 12 12 C 1.46895 * 111.00352 * 174.19035 * 11 10 9 13 13 C 1.52997 * 109.47189 * 306.58683 * 12 11 10 14 14 C 1.50702 * 115.54920 * 305.98052 * 13 12 11 15 15 H 1.08001 * 119.99624 * 144.28675 * 14 13 12 16 16 C 1.37875 * 120.00002 * 324.27702 * 14 13 12 17 17 N 1.31516 * 119.99899 * 351.51628 * 16 14 13 18 18 Si 1.86795 * 119.99875 * 171.50910 * 16 14 13 19 19 H 1.48502 * 109.47313 * 65.00428 * 18 16 14 20 20 H 1.48499 * 109.47104 * 185.00480 * 18 16 14 21 21 H 1.48507 * 109.47548 * 305.00447 * 18 16 14 22 22 C 1.53005 * 117.49842 * 160.31039 * 13 12 11 23 23 C 1.53001 * 117.49921 * 91.65493 * 13 12 11 24 24 C 1.46843 * 111.19367 * 298.29062 * 11 10 9 25 25 C 1.53036 * 109.52720 * 61.74308 * 24 11 10 26 26 C 1.38084 * 119.96384 * 179.72202 * 2 1 3 27 27 H 1.09008 * 109.47240 * 270.27178 * 1 2 3 28 28 H 1.08992 * 109.47329 * 30.27694 * 1 2 3 29 29 H 1.09001 * 109.47007 * 150.28119 * 1 2 3 30 30 H 1.08003 * 119.92633 * 0.02562 * 3 2 1 31 31 H 1.08001 * 119.96611 * 179.72203 * 4 3 2 32 32 H 1.07997 * 120.03504 * 180.25110 * 5 4 3 33 33 H 0.97002 * 119.99972 * 180.02562 * 7 6 5 34 34 H 1.08997 * 109.51831 * 35.00307 * 8 7 6 35 35 H 1.08998 * 109.50908 * 302.37929 * 9 8 7 36 36 H 1.09003 * 109.50650 * 62.49924 * 9 8 7 37 37 H 1.09000 * 109.41327 * 299.06637 * 10 9 8 38 38 H 1.09013 * 109.45509 * 179.12982 * 10 9 8 39 39 H 1.09004 * 109.46852 * 66.58770 * 12 11 10 40 40 H 1.09003 * 109.46959 * 186.58362 * 12 11 10 41 41 H 0.96999 * 119.99664 * 185.00181 * 17 16 14 42 42 H 1.08999 * 117.50182 * 0.02562 * 22 13 12 43 43 H 1.09004 * 117.49773 * 145.02008 * 22 13 12 44 44 H 1.09007 * 117.49575 * 214.98309 * 23 13 12 45 45 H 1.08995 * 117.50004 * 359.97083 * 23 13 12 46 46 H 1.08997 * 109.46637 * 301.72229 * 24 11 10 47 47 H 1.09007 * 109.45445 * 181.75333 * 24 11 10 48 48 H 1.09001 * 109.50485 * 180.88040 * 25 24 11 49 49 H 1.08997 * 109.50530 * 60.75803 * 25 24 11 50 50 H 1.08000 * 120.03863 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5804 1.2028 -0.0058 5 6 4.2765 0.0098 0.0000 6 6 3.5860 -1.1953 0.0058 7 7 4.2868 -2.4035 0.0111 8 6 5.7518 -2.4006 0.0100 9 6 6.2622 -2.2839 -1.4288 10 6 7.7914 -2.3443 -1.4287 11 7 8.2338 -3.6116 -0.8334 12 6 9.6908 -3.7640 -0.9419 13 6 10.1153 -3.5829 -2.4006 14 6 9.4080 -4.4642 -3.3976 15 1 9.1736 -4.0861 -4.3818 16 6 9.0602 -5.7532 -3.0535 17 7 9.4891 -6.2704 -1.9229 18 14 7.9796 -6.7649 -4.1928 19 1 8.7016 -7.0163 -5.4659 20 1 7.6533 -8.0605 -3.5446 21 1 6.7247 -6.0222 -4.4739 22 6 11.5825 -3.2446 -2.6727 23 6 10.5036 -2.1740 -2.8536 24 6 7.7956 -3.7235 0.5636 25 6 6.2665 -3.7060 0.6230 26 6 2.1967 -1.1963 0.0058 27 1 -0.3634 0.0049 1.0277 28 1 -0.3633 0.8874 -0.5181 29 1 -0.3633 -0.8925 -0.5095 30 1 1.6559 2.1325 0.0004 31 1 4.1167 2.1402 -0.0103 32 1 5.3564 0.0140 -0.0004 33 1 3.8035 -3.2445 0.0148 34 1 6.1147 -1.5555 0.5950 35 1 5.8664 -3.1073 -2.0233 36 1 5.9345 -1.3359 -1.8555 37 1 8.1868 -1.5120 -0.8465 38 1 8.1575 -2.2770 -2.4533 39 1 10.1818 -3.0118 -0.3245 40 1 9.9785 -4.7585 -0.6006 41 1 9.3056 -7.1998 -1.7143 42 1 12.2454 -3.1516 -1.8125 43 1 12.0360 -3.6593 -3.5730 44 1 10.2477 -1.8847 -3.8730 45 1 10.4562 -1.3761 -2.1126 46 1 8.1909 -2.8848 1.1366 47 1 8.1648 -4.6580 0.9862 48 1 5.9418 -3.7733 1.6614 49 1 5.8708 -4.5524 0.0618 50 1 1.6567 -2.1316 0.0099 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602792889.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:19 Heat of formation + Delta-G solvation = 53.654117 kcal Electronic energy + Delta-G solvation = -26754.954857 eV Core-core repulsion = 23361.224989 eV Total energy + Delta-G solvation = -3393.729868 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.72343 -38.52874 -36.68441 -34.90116 -32.38751 -32.01768 -31.50197 -30.31750 -28.54257 -26.87329 -25.69624 -24.95974 -22.85618 -22.30662 -22.18037 -21.06591 -20.34492 -19.36060 -18.83858 -16.97953 -16.31572 -16.13487 -15.60490 -14.77726 -14.62518 -14.31450 -14.21252 -13.98167 -13.85041 -13.65457 -13.48705 -13.38505 -13.01944 -12.64119 -12.39608 -12.29885 -12.22054 -11.85228 -11.54939 -11.31813 -11.25148 -10.98361 -10.88332 -10.83017 -10.69430 -10.52015 -10.42132 -10.39667 -10.10683 -9.95772 -9.63084 -9.24807 -8.94281 -8.67523 -8.57126 -7.97263 -7.28208 -7.14916 -5.87446 -3.91753 1.46934 1.70074 3.35957 3.40517 3.45149 3.52233 3.92713 4.47842 4.74270 4.82265 4.90831 5.02959 5.17721 5.19990 5.27175 5.30543 5.42217 5.47186 5.50830 5.56920 5.64635 5.70206 5.74549 5.81848 5.84621 6.00860 6.04629 6.07902 6.13358 6.18007 6.27406 6.36524 6.39036 6.42547 6.47970 6.58098 6.60153 6.69574 6.71733 6.73124 6.77613 6.87834 6.96381 6.97806 7.22850 7.35880 7.49305 7.64652 7.85054 8.06201 8.20756 8.26235 8.56789 9.01615 9.68734 11.13614 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.016902 B = 0.003376 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.205182 B = 8291.902303 C = 8889.101195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.043 4.043 3 C -0.189 4.189 4 C -0.069 4.069 5 C -0.205 4.205 6 C 0.230 3.770 7 N -0.740 5.740 8 C 0.152 3.848 9 C -0.127 4.127 10 C 0.061 3.939 11 N -0.497 5.497 12 C 0.105 3.895 13 C 0.066 3.934 14 C -0.481 4.481 15 H 0.053 0.947 16 C 0.092 3.908 17 N -0.872 5.872 18 Si 0.889 3.111 19 H -0.283 1.283 20 H -0.289 1.289 21 H -0.277 1.277 22 C -0.207 4.207 23 C -0.220 4.220 24 C 0.063 3.937 25 C -0.118 4.118 26 C -0.204 4.204 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.113 0.887 31 H 0.117 0.883 32 H 0.121 0.879 33 H 0.397 0.603 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.058 0.942 37 H 0.008 0.992 38 H 0.096 0.904 39 H -0.017 1.017 40 H 0.117 0.883 41 H 0.257 0.743 42 H 0.061 0.939 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.062 0.938 46 H 0.016 0.984 47 H 0.075 0.925 48 H 0.061 0.939 49 H 0.075 0.925 50 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.316 9.741 6.988 17.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.043 4.043 3 C -0.210 4.210 4 C -0.088 4.088 5 C -0.227 4.227 6 C 0.125 3.875 7 N -0.366 5.366 8 C 0.047 3.953 9 C -0.166 4.166 10 C -0.068 4.068 11 N -0.220 5.220 12 C -0.022 4.022 13 C 0.066 3.934 14 C -0.518 4.518 15 H 0.071 0.929 16 C -0.111 4.111 17 N -0.508 5.508 18 Si 0.718 3.282 19 H -0.209 1.209 20 H -0.215 1.215 21 H -0.202 1.202 22 C -0.245 4.245 23 C -0.257 4.257 24 C -0.066 4.066 25 C -0.156 4.156 26 C -0.227 4.227 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.131 0.869 31 H 0.135 0.865 32 H 0.139 0.861 33 H 0.231 0.769 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.076 0.924 37 H 0.026 0.974 38 H 0.115 0.885 39 H 0.000 1.000 40 H 0.135 0.865 41 H 0.068 0.932 42 H 0.080 0.920 43 H 0.095 0.905 44 H 0.091 0.909 45 H 0.081 0.919 46 H 0.034 0.966 47 H 0.093 0.907 48 H 0.079 0.921 49 H 0.093 0.907 50 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -12.390 9.193 6.885 16.894 hybrid contribution -0.214 -0.139 -0.222 0.338 sum -12.604 9.054 6.662 16.888 Atomic orbital electron populations 1.20784 0.91696 1.02497 1.02040 1.19581 0.95372 0.92709 0.96672 1.20691 0.94116 0.97002 1.09159 1.20853 0.94054 0.97209 0.96645 1.20706 0.99793 0.91220 1.11007 1.17841 0.90864 0.86636 0.92159 1.44943 1.05588 1.04962 1.81133 1.21067 0.78797 0.98473 0.96963 1.22054 0.96687 1.01837 0.95999 1.22082 0.93098 0.89768 1.01810 1.61684 1.14592 1.32212 1.13529 1.21772 0.84167 1.01314 0.94938 1.18949 0.91118 0.90071 0.93303 1.20232 1.37061 0.96948 0.97546 0.92908 1.24706 0.94614 0.97397 0.94415 1.69753 1.45220 1.13018 1.22836 0.86731 0.81600 0.79277 0.80641 1.20881 1.21498 1.20227 1.22991 0.94914 1.05434 1.01195 1.22991 1.08462 0.93935 1.00362 1.21907 0.93368 1.00272 0.91028 1.21801 0.96823 0.97129 0.99881 1.20413 0.91989 0.97885 1.12377 0.91368 0.91695 0.91765 0.86923 0.86515 0.86131 0.76869 0.91153 0.90828 0.92355 0.97365 0.88536 0.99952 0.86490 0.93243 0.92026 0.90483 0.90850 0.91927 0.96632 0.90660 0.92071 0.90657 0.86626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.01 36.01 0.36 -0.59 16 2 C -0.04 -0.48 5.88 -104.65 -0.62 -1.10 16 3 C -0.19 -2.14 9.70 -39.55 -0.38 -2.53 16 4 C -0.07 -0.82 10.04 -39.61 -0.40 -1.21 16 5 C -0.20 -2.70 8.88 -39.38 -0.35 -3.05 16 6 C 0.23 3.05 6.64 -83.79 -0.56 2.49 16 7 N -0.74 -9.62 5.25 -52.05 -0.27 -9.89 16 8 C 0.15 2.17 2.21 -67.81 -0.15 2.02 16 9 C -0.13 -2.09 5.63 -26.65 -0.15 -2.24 16 10 C 0.06 1.16 4.80 -3.83 -0.02 1.14 16 11 N -0.50 -10.20 4.34 -234.67 -1.02 -11.22 16 12 C 0.10 2.38 4.17 -3.83 -0.02 2.36 16 13 C 0.07 1.58 1.08 -155.66 -0.17 1.41 16 14 C -0.48 -12.67 8.31 -34.44 -0.29 -12.95 16 15 H 0.05 1.42 7.83 -52.49 -0.41 1.01 16 16 C 0.09 2.43 5.19 -17.82 -0.09 2.34 16 17 N -0.87 -23.20 10.69 55.43 0.59 -22.61 16 18 Si 0.89 21.00 29.55 -169.99 -5.02 15.97 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 C -0.21 -4.65 9.96 -26.69 -0.27 -4.91 16 23 C -0.22 -4.70 8.16 -26.70 -0.22 -4.92 16 24 C 0.06 1.10 5.46 -3.84 -0.02 1.08 16 25 C -0.12 -1.74 5.57 -26.65 -0.15 -1.89 16 26 C -0.20 -2.49 9.55 -39.38 -0.38 -2.86 16 27 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 28 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 29 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 30 H 0.11 1.05 8.06 -52.48 -0.42 0.63 16 31 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 32 H 0.12 1.59 6.10 -52.49 -0.32 1.27 16 33 H 0.40 4.70 8.62 -40.82 -0.35 4.35 16 34 H 0.07 1.01 6.49 -51.93 -0.34 0.67 16 35 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.06 0.92 7.72 -51.93 -0.40 0.52 16 37 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 38 H 0.10 2.05 5.36 -51.92 -0.28 1.77 16 39 H -0.02 -0.38 8.09 -51.93 -0.42 -0.80 16 40 H 0.12 2.94 5.99 -51.93 -0.31 2.63 16 41 H 0.26 6.67 8.32 -40.82 -0.34 6.33 16 42 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 44 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 45 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 46 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 47 H 0.07 1.35 8.12 -51.93 -0.42 0.93 16 48 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 49 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 50 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 LS Contribution 386.77 15.07 5.83 5.83 Total: -1.00 -26.84 386.77 -12.47 -39.31 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -8.72 Total: 8.02 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: -3.85 Total: -25.41 kcal Atomic # 7 Polarization: -43.02 SS G_CDS: -0.70 Total: -43.72 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -26.84 -12.47 -39.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602792889.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.965 kcal (2) G-P(sol) polarization free energy of solvation -26.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds