Wall clock time and date at job start Tue Mar 31 2020 11:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38308 * 119.96175 * 2 1 4 4 C 1.38260 * 120.15165 * 180.27584 * 3 2 1 5 5 C 1.38131 * 120.06966 * 359.44622 * 4 3 2 6 6 C 1.38882 * 119.92773 * 0.27730 * 5 4 3 7 7 N 1.39674 * 120.07482 * 179.97438 * 6 5 4 8 8 C 1.46499 * 120.00175 * 359.97438 * 7 6 5 9 9 C 1.53109 * 109.52382 * 274.87420 * 8 7 6 10 10 C 1.53043 * 109.27254 * 182.50221 * 9 8 7 11 11 N 1.46844 * 109.57943 * 59.08624 * 10 9 8 12 12 C 1.46895 * 111.00352 * 174.19035 * 11 10 9 13 13 C 1.52997 * 109.47189 * 306.58683 * 12 11 10 14 14 C 1.50702 * 115.54920 * 305.98052 * 13 12 11 15 15 H 1.08001 * 119.99624 * 144.28675 * 14 13 12 16 16 C 1.37875 * 120.00002 * 324.27702 * 14 13 12 17 17 N 1.31516 * 119.99899 * 351.51628 * 16 14 13 18 18 Si 1.86795 * 119.99875 * 171.50910 * 16 14 13 19 19 H 1.48502 * 109.47313 * 65.00428 * 18 16 14 20 20 H 1.48499 * 109.47104 * 185.00480 * 18 16 14 21 21 H 1.48507 * 109.47548 * 305.00447 * 18 16 14 22 22 C 1.53005 * 117.49842 * 160.31039 * 13 12 11 23 23 C 1.53001 * 117.49921 * 91.65493 * 13 12 11 24 24 C 1.46843 * 111.19367 * 298.29062 * 11 10 9 25 25 C 1.53036 * 109.52720 * 61.74308 * 24 11 10 26 26 C 1.38084 * 119.96384 * 179.72202 * 2 1 3 27 27 H 1.09008 * 109.47240 * 270.27178 * 1 2 3 28 28 H 1.08992 * 109.47329 * 30.27694 * 1 2 3 29 29 H 1.09001 * 109.47007 * 150.28119 * 1 2 3 30 30 H 1.08003 * 119.92633 * 0.02562 * 3 2 1 31 31 H 1.08001 * 119.96611 * 179.72203 * 4 3 2 32 32 H 1.07997 * 120.03504 * 180.25110 * 5 4 3 33 33 H 0.97002 * 119.99972 * 180.02562 * 7 6 5 34 34 H 1.08997 * 109.51831 * 35.00307 * 8 7 6 35 35 H 1.08998 * 109.50908 * 302.37929 * 9 8 7 36 36 H 1.09003 * 109.50650 * 62.49924 * 9 8 7 37 37 H 1.09000 * 109.41327 * 299.06637 * 10 9 8 38 38 H 1.09013 * 109.45509 * 179.12982 * 10 9 8 39 39 H 1.09004 * 109.46852 * 66.58770 * 12 11 10 40 40 H 1.09003 * 109.46959 * 186.58362 * 12 11 10 41 41 H 0.96999 * 119.99664 * 185.00181 * 17 16 14 42 42 H 1.08999 * 117.50182 * 0.02562 * 22 13 12 43 43 H 1.09004 * 117.49773 * 145.02008 * 22 13 12 44 44 H 1.09007 * 117.49575 * 214.98309 * 23 13 12 45 45 H 1.08995 * 117.50004 * 359.97083 * 23 13 12 46 46 H 1.08997 * 109.46637 * 301.72229 * 24 11 10 47 47 H 1.09007 * 109.45445 * 181.75333 * 24 11 10 48 48 H 1.09001 * 109.50485 * 180.88040 * 25 24 11 49 49 H 1.08997 * 109.50530 * 60.75803 * 25 24 11 50 50 H 1.08000 * 120.03863 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5804 1.2028 -0.0058 5 6 4.2765 0.0098 0.0000 6 6 3.5860 -1.1953 0.0058 7 7 4.2868 -2.4035 0.0111 8 6 5.7518 -2.4006 0.0100 9 6 6.2622 -2.2839 -1.4288 10 6 7.7914 -2.3443 -1.4287 11 7 8.2338 -3.6116 -0.8334 12 6 9.6908 -3.7640 -0.9419 13 6 10.1153 -3.5829 -2.4006 14 6 9.4080 -4.4642 -3.3976 15 1 9.1736 -4.0861 -4.3818 16 6 9.0602 -5.7532 -3.0535 17 7 9.4891 -6.2704 -1.9229 18 14 7.9796 -6.7649 -4.1928 19 1 8.7016 -7.0163 -5.4659 20 1 7.6533 -8.0605 -3.5446 21 1 6.7247 -6.0222 -4.4739 22 6 11.5825 -3.2446 -2.6727 23 6 10.5036 -2.1740 -2.8536 24 6 7.7956 -3.7235 0.5636 25 6 6.2665 -3.7060 0.6230 26 6 2.1967 -1.1963 0.0058 27 1 -0.3634 0.0049 1.0277 28 1 -0.3633 0.8874 -0.5181 29 1 -0.3633 -0.8925 -0.5095 30 1 1.6559 2.1325 0.0004 31 1 4.1167 2.1402 -0.0103 32 1 5.3564 0.0140 -0.0004 33 1 3.8035 -3.2445 0.0148 34 1 6.1147 -1.5555 0.5950 35 1 5.8664 -3.1073 -2.0233 36 1 5.9345 -1.3359 -1.8555 37 1 8.1868 -1.5120 -0.8465 38 1 8.1575 -2.2770 -2.4533 39 1 10.1818 -3.0118 -0.3245 40 1 9.9785 -4.7585 -0.6006 41 1 9.3056 -7.1998 -1.7143 42 1 12.2454 -3.1516 -1.8125 43 1 12.0360 -3.6593 -3.5730 44 1 10.2477 -1.8847 -3.8730 45 1 10.4562 -1.3761 -2.1126 46 1 8.1909 -2.8848 1.1366 47 1 8.1648 -4.6580 0.9862 48 1 5.9418 -3.7733 1.6614 49 1 5.8708 -4.5524 0.0618 50 1 1.6567 -2.1316 0.0099 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602792889.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:18 Heat of formation + Delta-G solvation = 41.581453 kcal Electronic energy + Delta-G solvation = -26755.478367 eV Core-core repulsion = 23361.224989 eV Total energy + Delta-G solvation = -3394.253378 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.79692 -39.85524 -38.19763 -36.18140 -34.01216 -33.29256 -32.70562 -31.69662 -29.63673 -27.66791 -27.56123 -26.59710 -24.19201 -23.63149 -23.21524 -22.76851 -21.38754 -20.73389 -20.62134 -18.07764 -17.94989 -17.27766 -16.67742 -16.58543 -16.09363 -15.79706 -15.35745 -15.29735 -15.22066 -14.95162 -14.61067 -14.45646 -14.25774 -14.02475 -13.64858 -13.45579 -13.28182 -13.13319 -12.93549 -12.83727 -12.80245 -12.58129 -12.31036 -12.26242 -12.11527 -12.02303 -11.90320 -11.77380 -11.62558 -11.39941 -11.08655 -10.87008 -10.77299 -10.38358 -9.87877 -9.55556 -8.73123 -8.26174 -7.86945 -5.96854 0.57217 0.78647 1.44648 1.47840 1.53277 2.48612 2.51432 3.02004 3.10479 3.38218 3.73915 3.80367 3.99128 4.01852 4.10975 4.18869 4.28599 4.35122 4.38089 4.49561 4.51869 4.55452 4.60099 4.62415 4.66618 4.74701 4.80844 4.87203 4.88131 4.89220 4.95932 4.98120 5.01151 5.06900 5.11504 5.16993 5.19963 5.24285 5.30843 5.42439 5.48506 5.50613 5.56899 5.70612 5.71358 5.84491 6.06339 6.11177 6.45170 6.49385 6.66681 6.73371 6.89213 7.01447 7.64525 9.10866 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.016902 B = 0.003376 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.205182 B = 8291.902303 C = 8889.101195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.049 4.049 3 C -0.194 4.194 4 C -0.076 4.076 5 C -0.223 4.223 6 C 0.213 3.787 7 N -0.738 5.738 8 C 0.166 3.834 9 C -0.116 4.116 10 C 0.068 3.932 11 N -0.516 5.516 12 C 0.116 3.884 13 C 0.041 3.959 14 C -0.495 4.495 15 H 0.038 0.962 16 C 0.059 3.941 17 N -0.885 5.885 18 Si 0.935 3.065 19 H -0.282 1.282 20 H -0.286 1.286 21 H -0.280 1.280 22 C -0.209 4.209 23 C -0.196 4.196 24 C 0.063 3.937 25 C -0.108 4.108 26 C -0.214 4.214 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.133 0.867 31 H 0.134 0.866 32 H 0.116 0.884 33 H 0.402 0.598 34 H 0.076 0.924 35 H 0.049 0.951 36 H 0.064 0.936 37 H 0.018 0.982 38 H 0.070 0.930 39 H -0.012 1.012 40 H 0.090 0.910 41 H 0.256 0.744 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.072 0.928 45 H 0.080 0.920 46 H 0.028 0.972 47 H 0.065 0.935 48 H 0.086 0.914 49 H 0.062 0.938 50 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.026 11.078 7.790 19.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.050 4.050 3 C -0.214 4.214 4 C -0.094 4.094 5 C -0.246 4.246 6 C 0.110 3.890 7 N -0.366 5.366 8 C 0.060 3.940 9 C -0.155 4.155 10 C -0.061 4.061 11 N -0.240 5.240 12 C -0.011 4.011 13 C 0.041 3.959 14 C -0.533 4.533 15 H 0.056 0.944 16 C -0.143 4.143 17 N -0.522 5.522 18 Si 0.763 3.237 19 H -0.208 1.208 20 H -0.211 1.211 21 H -0.206 1.206 22 C -0.248 4.248 23 C -0.234 4.234 24 C -0.066 4.066 25 C -0.146 4.146 26 C -0.237 4.237 27 H 0.098 0.902 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.151 0.849 31 H 0.152 0.848 32 H 0.134 0.866 33 H 0.237 0.763 34 H 0.094 0.906 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.036 0.964 38 H 0.088 0.912 39 H 0.006 0.994 40 H 0.108 0.892 41 H 0.065 0.935 42 H 0.092 0.908 43 H 0.086 0.914 44 H 0.091 0.909 45 H 0.098 0.902 46 H 0.046 0.954 47 H 0.083 0.917 48 H 0.104 0.896 49 H 0.080 0.920 50 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -14.115 10.540 7.686 19.220 hybrid contribution 0.299 -0.483 -0.494 0.753 sum -13.815 10.056 7.192 18.540 Atomic orbital electron populations 1.20831 0.89623 1.03383 1.03015 1.19981 0.97030 0.92388 0.95588 1.21027 0.94116 0.97998 1.08290 1.21132 0.94626 0.97539 0.96125 1.20815 0.99766 0.91871 1.12111 1.18018 0.91454 0.86564 0.92999 1.44780 1.04833 1.05373 1.81621 1.20796 0.79728 0.98289 0.95171 1.21932 0.94992 1.01120 0.97493 1.21955 0.94517 0.89391 1.00236 1.61595 1.13344 1.33335 1.15688 1.21477 0.85721 0.99835 0.94064 1.19017 0.91781 0.91494 0.93630 1.20382 1.37653 0.97679 0.97549 0.94408 1.25175 0.95460 0.98142 0.95519 1.69876 1.45810 1.12954 1.23575 0.86004 0.80129 0.78197 0.79364 1.20776 1.21146 1.20609 1.22996 0.94620 1.05841 1.01310 1.22925 1.06490 0.93271 1.00681 1.21941 0.95080 1.00177 0.89352 1.21702 0.94826 0.96848 1.01230 1.20643 0.91734 0.98896 1.12383 0.90238 0.90500 0.91249 0.84862 0.84774 0.86621 0.76275 0.90612 0.93168 0.91735 0.96414 0.91169 0.99373 0.89226 0.93472 0.90759 0.91352 0.90911 0.90150 0.95439 0.91686 0.89590 0.91963 0.85609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.57 10.01 71.24 0.71 -0.86 16 2 C -0.05 -1.00 5.88 -19.88 -0.12 -1.12 16 3 C -0.19 -3.93 9.70 22.29 0.22 -3.71 16 4 C -0.08 -1.65 10.04 22.25 0.22 -1.43 16 5 C -0.22 -5.60 8.88 22.40 0.20 -5.40 16 6 C 0.21 5.39 6.64 38.21 0.25 5.64 16 7 N -0.74 -18.33 5.25 -318.60 -1.67 -20.00 16 8 C 0.17 4.55 2.21 45.07 0.10 4.65 16 9 C -0.12 -3.80 5.63 30.65 0.17 -3.63 16 10 C 0.07 2.54 4.80 86.33 0.41 2.96 16 11 N -0.52 -21.21 4.34 -896.36 -3.89 -25.10 16 12 C 0.12 5.31 4.17 86.30 0.36 5.67 16 13 C 0.04 1.98 1.08 -52.93 -0.06 1.93 16 14 C -0.50 -26.53 8.31 25.60 0.21 -26.32 16 15 H 0.04 2.08 7.83 -2.91 -0.02 2.06 16 16 C 0.06 3.14 5.19 84.65 0.44 3.58 16 17 N -0.88 -47.78 10.69 21.45 0.23 -47.56 16 18 Si 0.94 43.54 29.55 68.60 2.03 45.57 16 19 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 20 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 21 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 22 C -0.21 -9.33 9.96 30.62 0.30 -9.03 16 23 C -0.20 -8.25 8.16 30.62 0.25 -8.00 16 24 C 0.06 2.15 5.46 86.33 0.47 2.62 16 25 C -0.11 -3.05 5.57 30.65 0.17 -2.88 16 26 C -0.21 -4.86 9.55 22.40 0.21 -4.65 16 27 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 28 H 0.08 0.90 8.09 -2.39 -0.02 0.88 16 29 H 0.07 0.90 8.08 -2.39 -0.02 0.89 16 30 H 0.13 2.08 8.06 -2.91 -0.02 2.05 16 31 H 0.13 2.34 8.06 -2.91 -0.02 2.32 16 32 H 0.12 2.93 6.10 -2.91 -0.02 2.91 16 33 H 0.40 9.05 8.62 -92.71 -0.80 8.25 16 34 H 0.08 2.05 6.49 -2.39 -0.02 2.03 16 35 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.06 2.01 7.72 -2.39 -0.02 1.99 16 37 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.07 3.00 5.36 -2.38 -0.01 2.99 16 39 H -0.01 -0.50 8.09 -2.39 -0.02 -0.52 16 40 H 0.09 4.60 5.99 -2.39 -0.01 4.58 16 41 H 0.26 13.42 8.32 -92.71 -0.77 12.65 16 42 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 43 H 0.07 3.12 8.14 -2.38 -0.02 3.10 16 44 H 0.07 3.04 8.14 -2.38 -0.02 3.02 16 45 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 46 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.06 2.33 8.12 -2.38 -0.02 2.31 16 48 H 0.09 2.03 8.14 -2.39 -0.02 2.02 16 49 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 50 H 0.13 2.50 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -57.16 386.77 1.34 -55.82 By element: Atomic # 1 Polarization: 31.14 SS G_CDS: 0.11 Total: 31.25 kcal Atomic # 6 Polarization: -44.52 SS G_CDS: 4.54 Total: -39.98 kcal Atomic # 7 Polarization: -87.32 SS G_CDS: -5.34 Total: -92.66 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -57.16 1.34 -55.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602792889.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.405 kcal (2) G-P(sol) polarization free energy of solvation -57.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds