Wall clock time and date at job start Tue Mar 31 2020 11:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00018 * 2 1 4 4 H 1.48497 * 109.46617 * 275.44696 * 3 2 1 5 5 H 1.48495 * 109.47061 * 35.44304 * 3 2 1 6 6 H 1.48497 * 109.47269 * 155.44546 * 3 2 1 7 7 C 1.37877 * 120.00292 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00017 * 343.92040 * 7 2 1 9 9 C 1.50697 * 120.00379 * 163.92211 * 7 2 1 10 10 C 1.53004 * 115.54661 * 323.97676 * 9 7 2 11 11 N 1.46897 * 109.47344 * 291.02949 * 10 9 7 12 12 C 1.46848 * 110.99681 * 53.26863 * 11 10 9 13 13 C 1.53034 * 109.52664 * 185.83942 * 12 11 10 14 14 C 1.53126 * 109.27919 * 300.82686 * 13 12 11 15 15 N 1.46892 * 109.52440 * 177.55773 * 14 13 12 16 16 C 1.46892 * 111.00211 * 85.31418 * 15 14 13 17 17 C 1.50704 * 109.47230 * 179.97438 * 16 15 14 18 18 C 1.38231 * 120.00523 * 269.72743 * 17 16 15 19 19 C 1.38234 * 120.00507 * 179.76431 * 18 17 16 20 20 C 1.38233 * 119.99307 * 0.50920 * 19 18 17 21 21 C 1.38235 * 120.00668 * 359.74446 * 20 19 18 22 22 C 1.38231 * 119.99375 * 359.97438 * 21 20 19 23 23 C 1.53123 * 109.16060 * 57.64777 * 14 13 12 24 24 C 1.46840 * 111.00143 * 177.47813 * 11 10 9 25 25 C 1.52997 * 117.50078 * 109.64379 * 9 7 2 26 26 C 1.52999 * 117.50349 * 178.30497 * 9 7 2 27 27 H 0.96994 * 120.00198 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.47151 * 51.03540 * 10 9 7 29 29 H 1.09001 * 109.46569 * 171.03332 * 10 9 7 30 30 H 1.08998 * 109.46697 * 305.85605 * 12 11 10 31 31 H 1.09002 * 109.46428 * 65.82285 * 12 11 10 32 32 H 1.08990 * 109.51008 * 180.88122 * 13 12 11 33 33 H 1.09010 * 109.50134 * 60.75840 * 13 12 11 34 34 H 1.09001 * 109.51930 * 297.74856 * 14 13 12 35 35 H 1.00900 * 110.99937 * 209.26988 * 15 14 13 36 36 H 1.09000 * 109.47458 * 299.99575 * 16 15 14 37 37 H 1.08996 * 109.47429 * 59.99988 * 16 15 14 38 38 H 1.08008 * 119.99507 * 359.97438 * 18 17 16 39 39 H 1.08000 * 120.00323 * 180.22648 * 19 18 17 40 40 H 1.08007 * 119.99875 * 179.72111 * 20 19 18 41 41 H 1.08001 * 120.00284 * 179.97438 * 21 20 19 42 42 H 1.08002 * 119.99593 * 179.97438 * 22 21 20 43 43 H 1.08995 * 109.49904 * 182.41027 * 23 14 13 44 44 H 1.09002 * 109.50340 * 62.29088 * 23 14 13 45 45 H 1.08994 * 109.46562 * 294.17840 * 24 11 10 46 46 H 1.09004 * 109.46214 * 54.15084 * 24 11 10 47 47 H 1.09000 * 117.50103 * 215.00640 * 25 9 7 48 48 H 1.09000 * 117.49798 * 0.02673 * 25 9 7 49 49 H 1.09004 * 117.49468 * 359.97438 * 26 9 7 50 50 H 1.08993 * 117.50082 * 144.97032 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3815 2.1128 -1.3938 5 1 1.5089 2.6167 0.8119 6 1 3.5995 1.4098 0.5818 7 6 2.0046 -1.1940 0.0005 8 1 1.4963 -2.1110 0.2600 9 6 3.4674 -1.2197 -0.3609 10 6 3.8942 -0.2383 -1.4543 11 7 3.3246 -0.6604 -2.7408 12 6 1.8714 -0.8450 -2.6376 13 6 1.3347 -1.4222 -3.9493 14 6 1.6661 -0.4636 -5.0966 15 7 1.2048 -1.0399 -6.3666 16 6 -0.2097 -0.7240 -6.6051 17 6 -0.6459 -1.3298 -7.9143 18 6 -0.5311 -0.6031 -9.0845 19 6 -0.9267 -1.1606 -10.2860 20 6 -1.4469 -2.4410 -10.3157 21 6 -1.5667 -3.1658 -9.1448 22 6 -1.1656 -2.6104 -7.9442 23 6 3.1814 -0.2506 -5.1516 24 6 3.6645 0.2927 -3.8049 25 6 4.4674 -1.5060 0.7611 26 6 4.1858 -2.5693 -0.3033 27 1 -0.4850 0.8400 -0.0004 28 1 3.5336 0.7602 -1.2073 29 1 4.9818 -0.2244 -1.5256 30 1 1.6496 -1.5320 -1.8209 31 1 1.3961 0.1163 -2.4424 32 1 0.2540 -1.5445 -3.8780 33 1 1.7994 -2.3900 -4.1382 34 1 1.1698 0.4920 -4.9275 35 1 1.7796 -0.7281 -7.1350 36 1 -0.8148 -1.1326 -5.7958 37 1 -0.3388 0.3576 -6.6448 38 1 -0.1292 0.3991 -9.0606 39 1 -0.8336 -0.5941 -11.2009 40 1 -1.7602 -2.8749 -11.2538 41 1 -1.9735 -4.1660 -9.1680 42 1 -1.2596 -3.1765 -7.0292 43 1 3.4199 0.4643 -5.9391 44 1 3.6751 -1.1999 -5.3593 45 1 3.1808 1.2487 -3.6044 46 1 4.7451 0.4320 -3.8361 47 1 5.4294 -0.9951 0.7204 48 1 4.0672 -1.6761 1.7606 49 1 3.6004 -3.4386 -0.0036 50 1 4.9622 -2.7582 -1.0446 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602835179.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:56 Heat of formation + Delta-G solvation = 71.052948 kcal Electronic energy + Delta-G solvation = -26700.316314 eV Core-core repulsion = 23307.340916 eV Total energy + Delta-G solvation = -3392.975398 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.49203 -38.87401 -36.98471 -35.06467 -32.50227 -32.25410 -30.98875 -30.14098 -29.83750 -26.57013 -25.63658 -24.41462 -22.67969 -22.42455 -21.49009 -21.25793 -21.00412 -19.15213 -19.01348 -16.95961 -16.51089 -15.83782 -15.62617 -15.28776 -14.99234 -14.70504 -14.59432 -14.24724 -13.80750 -13.51425 -13.44222 -13.21328 -13.05673 -12.75889 -12.55084 -12.52186 -12.23435 -11.99142 -11.78393 -11.52125 -11.17048 -11.00022 -10.93644 -10.76596 -10.53537 -10.41265 -10.30212 -10.01764 -9.90548 -9.76931 -9.38201 -9.06310 -9.02265 -8.87371 -8.74508 -8.30862 -8.21861 -7.30865 -6.26162 -4.06313 1.23165 1.30908 3.14238 3.31074 3.35370 3.64226 4.28730 4.36991 4.56472 4.73239 4.77171 4.88940 4.91449 5.00726 5.11543 5.26418 5.37198 5.40910 5.43528 5.53924 5.59203 5.67124 5.73143 5.82880 5.92532 5.93372 5.96439 5.99079 6.08526 6.18665 6.20439 6.32713 6.35329 6.39316 6.40419 6.47933 6.53911 6.56810 6.59900 6.64333 6.65194 6.82479 6.89750 7.02353 7.11272 7.23827 7.24055 7.47848 7.59458 7.69896 7.99987 8.13344 8.45739 8.80814 9.39181 10.83963 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.020426 B = 0.003085 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.444832 B = 9074.453349 C = 9231.941118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.083 3.917 3 Si 0.883 3.117 4 H -0.287 1.287 5 H -0.300 1.300 6 H -0.264 1.264 7 C -0.482 4.482 8 H 0.082 0.918 9 C 0.009 3.991 10 C 0.087 3.913 11 N -0.522 5.522 12 C 0.037 3.963 13 C -0.099 4.099 14 C 0.085 3.915 15 N -0.677 5.677 16 C 0.095 3.905 17 C -0.076 4.076 18 C -0.117 4.117 19 C -0.124 4.124 20 C -0.125 4.125 21 C -0.122 4.122 22 C -0.096 4.096 23 C -0.109 4.109 24 C 0.052 3.948 25 C -0.211 4.211 26 C -0.173 4.173 27 H 0.265 0.735 28 H 0.020 0.980 29 H 0.055 0.945 30 H 0.150 0.850 31 H 0.025 0.975 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.036 0.964 35 H 0.335 0.665 36 H 0.084 0.916 37 H 0.035 0.965 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.121 0.879 42 H 0.125 0.875 43 H 0.053 0.947 44 H 0.078 0.922 45 H 0.022 0.978 46 H 0.065 0.935 47 H 0.065 0.935 48 H 0.083 0.917 49 H 0.079 0.921 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.476 -0.890 -17.156 17.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.121 4.121 3 Si 0.715 3.285 4 H -0.215 1.215 5 H -0.229 1.229 6 H -0.189 1.189 7 C -0.519 4.519 8 H 0.100 0.900 9 C 0.008 3.992 10 C -0.040 4.040 11 N -0.246 5.246 12 C -0.090 4.090 13 C -0.137 4.137 14 C -0.024 4.024 15 N -0.307 5.307 16 C -0.033 4.033 17 C -0.076 4.076 18 C -0.136 4.136 19 C -0.142 4.142 20 C -0.143 4.143 21 C -0.140 4.140 22 C -0.115 4.115 23 C -0.148 4.148 24 C -0.077 4.077 25 C -0.249 4.249 26 C -0.210 4.210 27 H 0.075 0.925 28 H 0.037 0.963 29 H 0.073 0.927 30 H 0.167 0.833 31 H 0.043 0.957 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.054 0.946 35 H 0.152 0.848 36 H 0.102 0.898 37 H 0.053 0.947 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.136 0.864 41 H 0.139 0.861 42 H 0.143 0.857 43 H 0.072 0.928 44 H 0.097 0.903 45 H 0.040 0.960 46 H 0.084 0.916 47 H 0.083 0.917 48 H 0.102 0.898 49 H 0.097 0.903 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.350 -1.838 -16.991 17.093 hybrid contribution 0.185 2.906 -0.133 2.915 sum 0.535 1.069 -17.124 17.166 Atomic orbital electron populations 1.69943 1.06183 1.27212 1.47947 1.24904 0.94448 0.98676 0.94109 0.86995 0.80583 0.83949 0.76930 1.21524 1.22870 1.18865 1.20203 0.90209 0.95357 1.46126 0.90035 1.19287 0.93484 0.93575 0.92826 1.21868 0.97053 0.95965 0.89082 1.61966 1.14037 1.44642 1.03947 1.23181 0.84784 1.02359 0.98687 1.21650 0.99980 0.98906 0.93210 1.21727 0.94689 0.96180 0.89839 1.60608 1.01882 1.63663 1.04559 1.20953 0.90786 0.97239 0.94350 1.19871 0.98332 0.94685 0.94727 1.21058 1.00374 0.99757 0.92368 1.21081 0.99665 0.95745 0.97667 1.21128 1.00127 0.94912 0.98162 1.21176 1.00239 0.99896 0.92710 1.21116 0.97450 0.94671 0.98228 1.21672 0.95125 1.01580 0.96390 1.22027 0.99645 0.93864 0.92213 1.23132 1.00459 1.05515 0.95801 1.22646 1.03369 0.93637 1.01397 0.92461 0.96316 0.92688 0.83266 0.95710 0.92508 0.91209 0.94641 0.84766 0.89754 0.94707 0.86520 0.86357 0.86387 0.86130 0.85681 0.92812 0.90309 0.95998 0.91628 0.91682 0.89844 0.90259 0.90719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.67 13.96 55.43 0.77 -23.90 16 2 C 0.08 2.22 3.43 -17.82 -0.06 2.15 16 3 Si 0.88 21.67 23.29 -169.99 -3.96 17.71 16 4 H -0.29 -6.98 6.89 56.52 0.39 -6.59 16 5 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 6 H -0.26 -6.33 6.93 56.52 0.39 -5.93 16 7 C -0.48 -12.61 6.44 -34.44 -0.22 -12.83 16 8 H 0.08 2.32 8.06 -52.48 -0.42 1.90 16 9 C 0.01 0.22 1.10 -155.66 -0.17 0.04 16 10 C 0.09 1.90 4.39 -3.82 -0.02 1.88 16 11 N -0.52 -10.61 4.75 -234.68 -1.12 -11.72 16 12 C 0.04 0.80 3.80 -3.84 -0.01 0.78 16 13 C -0.10 -1.83 5.59 -26.65 -0.15 -1.98 16 14 C 0.08 1.33 2.56 -67.59 -0.17 1.16 16 15 N -0.68 -9.14 6.30 -107.87 -0.68 -9.82 16 16 C 0.10 1.21 5.61 -4.98 -0.03 1.18 16 17 C -0.08 -0.89 5.39 -104.62 -0.56 -1.45 16 18 C -0.12 -1.23 9.70 -39.59 -0.38 -1.61 16 19 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 20 C -0.13 -1.17 10.05 -39.58 -0.40 -1.57 16 21 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 22 C -0.10 -1.10 9.70 -39.58 -0.38 -1.49 16 23 C -0.11 -1.63 5.36 -26.65 -0.14 -1.77 16 24 C 0.05 0.90 5.46 -3.84 -0.02 0.88 16 25 C -0.21 -4.41 9.91 -26.70 -0.26 -4.68 16 26 C -0.17 -3.55 9.96 -26.70 -0.27 -3.82 16 27 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.02 0.45 2.25 -51.93 -0.12 0.33 16 29 H 0.05 1.10 8.06 -51.93 -0.42 0.68 16 30 H 0.15 3.72 4.32 -51.93 -0.22 3.50 16 31 H 0.02 0.60 6.26 -51.93 -0.33 0.28 16 32 H 0.06 1.06 7.54 -51.93 -0.39 0.67 16 33 H 0.07 1.31 8.14 -51.92 -0.42 0.89 16 34 H 0.04 0.60 7.80 -51.93 -0.41 0.20 16 35 H 0.33 4.08 8.35 -39.29 -0.33 3.75 16 36 H 0.08 1.16 7.46 -51.93 -0.39 0.77 16 37 H 0.03 0.43 8.00 -51.93 -0.42 0.02 16 38 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 39 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 41 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 42 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 43 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 1.04 8.12 -51.93 -0.42 0.62 16 47 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 48 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 49 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 50 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 LS Contribution 377.73 15.07 5.69 5.69 Total: -1.00 -27.27 377.73 -11.85 -39.13 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -8.51 Total: 9.22 kcal Atomic # 6 Polarization: -22.26 SS G_CDS: -4.06 Total: -26.31 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: -1.02 Total: -45.44 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -3.96 Total: 17.71 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -27.27 -11.85 -39.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602835179.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.181 kcal (2) G-P(sol) polarization free energy of solvation -27.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds