Wall clock time and date at job start Tue Mar 31 2020 11:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00018 * 2 1 4 4 H 1.48497 * 109.46617 * 275.44696 * 3 2 1 5 5 H 1.48495 * 109.47061 * 35.44304 * 3 2 1 6 6 H 1.48497 * 109.47269 * 155.44546 * 3 2 1 7 7 C 1.37877 * 120.00292 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00017 * 343.92040 * 7 2 1 9 9 C 1.50697 * 120.00379 * 163.92211 * 7 2 1 10 10 C 1.53004 * 115.54661 * 323.97676 * 9 7 2 11 11 N 1.46897 * 109.47344 * 291.02949 * 10 9 7 12 12 C 1.46848 * 110.99681 * 53.26863 * 11 10 9 13 13 C 1.53034 * 109.52664 * 185.83942 * 12 11 10 14 14 C 1.53126 * 109.27919 * 300.82686 * 13 12 11 15 15 N 1.46892 * 109.52440 * 177.55773 * 14 13 12 16 16 C 1.46892 * 111.00211 * 85.31418 * 15 14 13 17 17 C 1.50704 * 109.47230 * 179.97438 * 16 15 14 18 18 C 1.38231 * 120.00523 * 269.72743 * 17 16 15 19 19 C 1.38234 * 120.00507 * 179.76431 * 18 17 16 20 20 C 1.38233 * 119.99307 * 0.50920 * 19 18 17 21 21 C 1.38235 * 120.00668 * 359.74446 * 20 19 18 22 22 C 1.38231 * 119.99375 * 359.97438 * 21 20 19 23 23 C 1.53123 * 109.16060 * 57.64777 * 14 13 12 24 24 C 1.46840 * 111.00143 * 177.47813 * 11 10 9 25 25 C 1.52997 * 117.50078 * 109.64379 * 9 7 2 26 26 C 1.52999 * 117.50349 * 178.30497 * 9 7 2 27 27 H 0.96994 * 120.00198 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.47151 * 51.03540 * 10 9 7 29 29 H 1.09001 * 109.46569 * 171.03332 * 10 9 7 30 30 H 1.08998 * 109.46697 * 305.85605 * 12 11 10 31 31 H 1.09002 * 109.46428 * 65.82285 * 12 11 10 32 32 H 1.08990 * 109.51008 * 180.88122 * 13 12 11 33 33 H 1.09010 * 109.50134 * 60.75840 * 13 12 11 34 34 H 1.09001 * 109.51930 * 297.74856 * 14 13 12 35 35 H 1.00900 * 110.99937 * 209.26988 * 15 14 13 36 36 H 1.09000 * 109.47458 * 299.99575 * 16 15 14 37 37 H 1.08996 * 109.47429 * 59.99988 * 16 15 14 38 38 H 1.08008 * 119.99507 * 359.97438 * 18 17 16 39 39 H 1.08000 * 120.00323 * 180.22648 * 19 18 17 40 40 H 1.08007 * 119.99875 * 179.72111 * 20 19 18 41 41 H 1.08001 * 120.00284 * 179.97438 * 21 20 19 42 42 H 1.08002 * 119.99593 * 179.97438 * 22 21 20 43 43 H 1.08995 * 109.49904 * 182.41027 * 23 14 13 44 44 H 1.09002 * 109.50340 * 62.29088 * 23 14 13 45 45 H 1.08994 * 109.46562 * 294.17840 * 24 11 10 46 46 H 1.09004 * 109.46214 * 54.15084 * 24 11 10 47 47 H 1.09000 * 117.50103 * 215.00640 * 25 9 7 48 48 H 1.09000 * 117.49798 * 0.02673 * 25 9 7 49 49 H 1.09004 * 117.49468 * 359.97438 * 26 9 7 50 50 H 1.08993 * 117.50082 * 144.97032 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3815 2.1128 -1.3938 5 1 1.5089 2.6167 0.8119 6 1 3.5995 1.4098 0.5818 7 6 2.0046 -1.1940 0.0005 8 1 1.4963 -2.1110 0.2600 9 6 3.4674 -1.2197 -0.3609 10 6 3.8942 -0.2383 -1.4543 11 7 3.3246 -0.6604 -2.7408 12 6 1.8714 -0.8450 -2.6376 13 6 1.3347 -1.4222 -3.9493 14 6 1.6661 -0.4636 -5.0966 15 7 1.2048 -1.0399 -6.3666 16 6 -0.2097 -0.7240 -6.6051 17 6 -0.6459 -1.3298 -7.9143 18 6 -0.5311 -0.6031 -9.0845 19 6 -0.9267 -1.1606 -10.2860 20 6 -1.4469 -2.4410 -10.3157 21 6 -1.5667 -3.1658 -9.1448 22 6 -1.1656 -2.6104 -7.9442 23 6 3.1814 -0.2506 -5.1516 24 6 3.6645 0.2927 -3.8049 25 6 4.4674 -1.5060 0.7611 26 6 4.1858 -2.5693 -0.3033 27 1 -0.4850 0.8400 -0.0004 28 1 3.5336 0.7602 -1.2073 29 1 4.9818 -0.2244 -1.5256 30 1 1.6496 -1.5320 -1.8209 31 1 1.3961 0.1163 -2.4424 32 1 0.2540 -1.5445 -3.8780 33 1 1.7994 -2.3900 -4.1382 34 1 1.1698 0.4920 -4.9275 35 1 1.7796 -0.7281 -7.1350 36 1 -0.8148 -1.1326 -5.7958 37 1 -0.3388 0.3576 -6.6448 38 1 -0.1292 0.3991 -9.0606 39 1 -0.8336 -0.5941 -11.2009 40 1 -1.7602 -2.8749 -11.2538 41 1 -1.9735 -4.1660 -9.1680 42 1 -1.2596 -3.1765 -7.0292 43 1 3.4199 0.4643 -5.9391 44 1 3.6751 -1.1999 -5.3593 45 1 3.1808 1.2487 -3.6044 46 1 4.7451 0.4320 -3.8361 47 1 5.4294 -0.9951 0.7204 48 1 4.0672 -1.6761 1.7606 49 1 3.6004 -3.4386 -0.0036 50 1 4.9622 -2.7582 -1.0446 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602835179.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:55 Heat of formation + Delta-G solvation = 54.739449 kcal Electronic energy + Delta-G solvation = -26701.023721 eV Core-core repulsion = 23307.340916 eV Total energy + Delta-G solvation = -3393.682804 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.65829 -40.08476 -38.47559 -36.40621 -34.48626 -33.45502 -31.75762 -31.64164 -31.00760 -28.30258 -27.19028 -25.71892 -23.88961 -23.42105 -23.02997 -22.78238 -21.95595 -20.90262 -20.61048 -18.40356 -17.79327 -17.43286 -16.91308 -16.43560 -16.07952 -15.98008 -15.86457 -15.56099 -15.46729 -15.04381 -14.78922 -14.62032 -14.27198 -14.15427 -13.83860 -13.68402 -13.62867 -13.35715 -13.14273 -12.97765 -12.76162 -12.45415 -12.11701 -12.11118 -11.99382 -11.94194 -11.82054 -11.73555 -11.49384 -11.30325 -11.22127 -10.83875 -10.50368 -10.25412 -9.80332 -9.71195 -9.38441 -8.99669 -8.35009 -6.14943 0.43617 0.53066 1.17075 1.29468 1.38367 2.25949 2.80322 2.83059 3.07732 3.30979 3.65137 3.77332 3.87946 3.94173 4.03085 4.09638 4.18510 4.22296 4.28477 4.31069 4.37424 4.42757 4.50140 4.57633 4.62913 4.63180 4.68657 4.72507 4.77637 4.79117 4.83948 4.91243 4.99382 5.00751 5.09057 5.13062 5.16682 5.19043 5.24060 5.31972 5.48636 5.58287 5.58921 5.64458 5.69171 5.74020 5.77688 6.01318 6.15083 6.28082 6.37561 6.46334 6.50976 6.70999 7.30800 8.78839 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.020426 B = 0.003085 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.444832 B = 9074.453349 C = 9231.941118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.045 3.955 3 Si 0.931 3.069 4 H -0.287 1.287 5 H -0.308 1.308 6 H -0.248 1.248 7 C -0.474 4.474 8 H 0.041 0.959 9 C -0.020 4.020 10 C 0.087 3.913 11 N -0.520 5.520 12 C 0.053 3.947 13 C -0.091 4.091 14 C 0.094 3.906 15 N -0.673 5.673 16 C 0.100 3.900 17 C -0.090 4.090 18 C -0.123 4.123 19 C -0.125 4.125 20 C -0.126 4.126 21 C -0.129 4.129 22 C -0.116 4.116 23 C -0.100 4.100 24 C 0.047 3.953 25 C -0.199 4.199 26 C -0.157 4.157 27 H 0.263 0.737 28 H 0.003 0.997 29 H 0.083 0.917 30 H 0.113 0.887 31 H -0.008 1.008 32 H 0.042 0.958 33 H 0.068 0.932 34 H 0.021 0.979 35 H 0.348 0.652 36 H 0.064 0.936 37 H 0.038 0.962 38 H 0.129 0.871 39 H 0.144 0.856 40 H 0.144 0.856 41 H 0.137 0.863 42 H 0.116 0.884 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.005 0.995 46 H 0.092 0.908 47 H 0.092 0.908 48 H 0.075 0.925 49 H 0.071 0.929 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.969 -0.513 -19.977 20.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.155 4.155 3 Si 0.762 3.238 4 H -0.215 1.215 5 H -0.237 1.237 6 H -0.172 1.172 7 C -0.511 4.511 8 H 0.059 0.941 9 C -0.021 4.021 10 C -0.040 4.040 11 N -0.244 5.244 12 C -0.075 4.075 13 C -0.130 4.130 14 C -0.015 4.015 15 N -0.304 5.304 16 C -0.029 4.029 17 C -0.091 4.091 18 C -0.142 4.142 19 C -0.143 4.143 20 C -0.144 4.144 21 C -0.147 4.147 22 C -0.135 4.135 23 C -0.138 4.138 24 C -0.081 4.081 25 C -0.237 4.237 26 C -0.194 4.194 27 H 0.073 0.927 28 H 0.021 0.979 29 H 0.101 0.899 30 H 0.130 0.870 31 H 0.010 0.990 32 H 0.061 0.939 33 H 0.087 0.913 34 H 0.039 0.961 35 H 0.167 0.833 36 H 0.083 0.917 37 H 0.056 0.944 38 H 0.147 0.853 39 H 0.161 0.839 40 H 0.162 0.838 41 H 0.155 0.845 42 H 0.134 0.866 43 H 0.105 0.895 44 H 0.102 0.898 45 H 0.024 0.976 46 H 0.110 0.890 47 H 0.110 0.890 48 H 0.094 0.906 49 H 0.090 0.910 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.872 -1.473 -19.821 20.083 hybrid contribution -0.639 2.662 0.712 2.829 sum 2.233 1.189 -19.109 19.276 Atomic orbital electron populations 1.70051 1.07642 1.27573 1.50565 1.25371 0.94749 1.01098 0.94274 0.86218 0.80067 0.80776 0.76732 1.21470 1.23746 1.17233 1.20250 0.92281 0.93628 1.44936 0.94072 1.19275 0.91845 0.96165 0.94831 1.21884 0.98536 0.94470 0.89151 1.62005 1.12423 1.45697 1.04296 1.22727 0.86069 0.99624 0.99085 1.21498 0.98895 0.99392 0.93204 1.21488 0.95767 0.94460 0.89823 1.60471 1.02503 1.63446 1.04024 1.20863 0.90019 0.97376 0.94633 1.19804 0.99613 0.95104 0.94560 1.21247 1.00414 1.00269 0.92269 1.21428 0.98695 0.95999 0.98196 1.21494 0.99169 0.94854 0.98875 1.21429 0.99955 1.00823 0.92456 1.21206 0.98575 0.94959 0.98771 1.21629 0.93681 1.02618 0.95848 1.22202 1.01170 0.92478 0.92261 1.23150 1.00559 1.05060 0.94922 1.22656 1.02881 0.92368 1.01493 0.92748 0.97947 0.89885 0.86974 0.98956 0.93937 0.91348 0.96060 0.83285 0.91743 0.94380 0.85294 0.83860 0.83812 0.84474 0.86553 0.89514 0.89792 0.97625 0.89004 0.88972 0.90589 0.91031 0.88399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.66 13.96 21.45 0.30 -54.36 16 2 C 0.05 2.51 3.43 84.65 0.29 2.80 16 3 Si 0.93 45.41 23.29 68.60 1.60 47.01 16 4 H -0.29 -13.82 6.89 99.48 0.69 -13.13 16 5 H -0.31 -15.26 7.11 99.48 0.71 -14.55 16 6 H -0.25 -11.35 6.93 99.48 0.69 -10.66 16 7 C -0.47 -25.72 6.44 25.60 0.16 -25.55 16 8 H 0.04 2.50 8.06 -2.91 -0.02 2.48 16 9 C -0.02 -0.90 1.10 -52.93 -0.06 -0.96 16 10 C 0.09 3.60 4.39 86.31 0.38 3.98 16 11 N -0.52 -20.55 4.75 -896.39 -4.26 -24.81 16 12 C 0.05 2.36 3.80 86.32 0.33 2.69 16 13 C -0.09 -3.47 5.59 30.65 0.17 -3.30 16 14 C 0.09 2.90 2.56 45.00 0.12 3.02 16 15 N -0.67 -17.54 6.30 -495.18 -3.12 -20.66 16 16 C 0.10 2.55 5.61 85.56 0.48 3.03 16 17 C -0.09 -2.07 5.39 -19.86 -0.11 -2.18 16 18 C -0.12 -2.37 9.70 22.27 0.22 -2.16 16 19 C -0.13 -2.05 10.05 22.27 0.22 -1.82 16 20 C -0.13 -2.03 10.05 22.27 0.22 -1.81 16 21 C -0.13 -2.41 10.05 22.27 0.22 -2.19 16 22 C -0.12 -2.66 9.70 22.27 0.22 -2.45 16 23 C -0.10 -2.69 5.36 30.65 0.16 -2.53 16 24 C 0.05 1.55 5.46 86.33 0.47 2.02 16 25 C -0.20 -7.88 9.91 30.62 0.30 -7.57 16 26 C -0.16 -6.16 9.96 30.62 0.30 -5.85 16 27 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 28 H 0.00 0.14 2.25 -2.39 -0.01 0.14 16 29 H 0.08 2.98 8.06 -2.39 -0.02 2.96 16 30 H 0.11 5.90 4.32 -2.39 -0.01 5.89 16 31 H -0.01 -0.40 6.26 -2.39 -0.01 -0.41 16 32 H 0.04 1.69 7.54 -2.39 -0.02 1.67 16 33 H 0.07 2.60 8.14 -2.38 -0.02 2.58 16 34 H 0.02 0.72 7.80 -2.39 -0.02 0.71 16 35 H 0.35 7.68 8.35 -89.69 -0.75 6.93 16 36 H 0.06 1.88 7.46 -2.39 -0.02 1.86 16 37 H 0.04 0.94 8.00 -2.39 -0.02 0.92 16 38 H 0.13 2.08 8.06 -2.91 -0.02 2.06 16 39 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 40 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 41 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 42 H 0.12 2.73 8.06 -2.91 -0.02 2.71 16 43 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 45 H 0.01 0.20 8.14 -2.39 -0.02 0.18 16 46 H 0.09 2.54 8.12 -2.38 -0.02 2.52 16 47 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 48 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 49 H 0.07 2.90 8.14 -2.38 -0.02 2.88 16 50 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 Total: -1.00 -61.74 377.73 -1.25 -62.99 By element: Atomic # 1 Polarization: 30.54 SS G_CDS: 0.12 Total: 30.66 kcal Atomic # 6 Polarization: -44.94 SS G_CDS: 4.11 Total: -40.83 kcal Atomic # 7 Polarization: -92.75 SS G_CDS: -7.08 Total: -99.83 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.60 Total: 47.01 kcal Total: -61.74 -1.25 -62.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602835179.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.729 kcal (2) G-P(sol) polarization free energy of solvation -61.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds