Wall clock time and date at job start Tue Mar 31 2020 10:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86793 * 120.00395 * 2 1 4 4 H 1.48499 * 109.47710 * 265.00282 * 3 2 1 5 5 H 1.48510 * 109.46950 * 25.00207 * 3 2 1 6 6 H 1.48500 * 109.47245 * 144.99515 * 3 2 1 7 7 C 1.38812 * 119.99504 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99902 * 156.87400 * 7 2 1 9 9 N 1.36941 * 120.00166 * 336.86652 * 7 2 1 10 10 C 1.46920 * 120.62838 * 151.75682 * 9 7 2 11 11 C 1.53199 * 108.77629 * 126.41658 * 10 9 7 12 12 C 1.53039 * 109.30877 * 54.63386 * 11 10 9 13 13 N 1.46899 * 109.45659 * 178.61901 * 12 11 10 14 14 C 1.46905 * 110.99880 * 276.04798 * 13 12 11 15 15 H 1.09001 * 109.46809 * 33.87346 * 14 13 12 16 16 C 1.50698 * 109.46873 * 153.86807 * 14 13 12 17 17 C 1.38236 * 120.00198 * 39.73121 * 16 14 13 18 18 C 1.38238 * 119.99982 * 179.80678 * 17 16 14 19 19 C 1.38237 * 119.99688 * 0.39448 * 18 17 16 20 20 C 1.38229 * 120.00413 * 359.86242 * 19 18 17 21 21 C 1.38237 * 120.00092 * 359.94724 * 20 19 18 22 22 C 1.52992 * 109.47308 * 273.87067 * 14 13 12 23 23 C 1.53786 * 113.61489 * 271.95456 * 22 14 13 24 24 C 1.53959 * 87.01833 * 220.04741 * 23 22 14 25 25 C 1.53776 * 87.11113 * 25.36200 * 24 23 22 26 26 C 1.53044 * 109.53944 * 298.63390 * 12 11 10 27 27 C 1.46924 * 120.62946 * 331.78163 * 9 7 2 28 28 H 0.96997 * 119.99184 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.59215 * 6.62582 * 10 9 7 30 30 H 1.08998 * 109.70373 * 246.27113 * 10 9 7 31 31 H 1.09002 * 109.49579 * 294.68512 * 11 10 9 32 32 H 1.08994 * 109.52551 * 174.59783 * 11 10 9 33 33 H 1.08996 * 109.46197 * 58.65634 * 12 11 10 34 34 H 1.00902 * 111.00652 * 40.00456 * 13 12 11 35 35 H 1.07998 * 119.99771 * 359.97438 * 17 16 14 36 36 H 1.07995 * 119.99928 * 180.23218 * 18 17 16 37 37 H 1.08000 * 119.99277 * 179.83067 * 19 18 17 38 38 H 1.08002 * 120.00316 * 179.97438 * 20 19 18 39 39 H 1.07994 * 120.00598 * 180.02562 * 21 20 19 40 40 H 1.09002 * 112.85385 * 43.15199 * 22 14 13 41 41 H 1.08997 * 113.61318 * 334.57231 * 23 22 14 42 42 H 1.08996 * 113.61027 * 105.47272 * 23 22 14 43 43 H 1.08999 * 113.53941 * 270.80831 * 24 23 22 44 44 H 1.09000 * 113.73811 * 139.94415 * 24 23 22 45 45 H 1.09000 * 113.61741 * 220.08386 * 25 24 23 46 46 H 1.09007 * 113.61212 * 89.18764 * 25 24 23 47 47 H 1.08993 * 109.50102 * 181.31974 * 26 12 11 48 48 H 1.09003 * 109.49780 * 301.41707 * 26 12 11 49 49 H 1.09000 * 109.58951 * 353.37126 * 27 9 7 50 50 H 1.09003 * 109.58866 * 113.65312 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.6035 1.9854 -1.3947 5 1 1.3989 2.6808 0.5918 6 1 3.4910 1.4728 0.8031 7 6 2.0102 -1.2022 -0.0005 8 1 3.0252 -1.2397 -0.3679 9 7 1.4080 -2.3407 0.4649 10 6 1.8010 -3.6594 -0.0500 11 6 2.1655 -4.5620 1.1330 12 6 0.9982 -4.5957 2.1222 13 7 1.3313 -5.4866 3.2418 14 6 1.0364 -6.8861 2.9066 15 1 1.2209 -7.0521 1.8452 16 6 1.9230 -7.7946 3.7187 17 6 2.1889 -7.4984 5.0425 18 6 2.9990 -8.3339 5.7885 19 6 3.5498 -9.4613 5.2084 20 6 3.2883 -9.7547 3.8831 21 6 2.4750 -8.9213 3.1382 22 6 -0.4297 -7.1883 3.2228 23 6 -0.6647 -7.6533 4.6697 24 6 -1.6716 -8.6665 4.0954 25 6 -0.8791 -8.5907 2.7798 26 6 0.7369 -3.1846 2.6539 27 6 0.3563 -2.2664 1.4881 28 1 -0.4849 0.8401 0.0004 29 1 2.6637 -3.5527 -0.7076 30 1 0.9718 -4.0997 -0.6037 31 1 3.0526 -4.1696 1.6302 32 1 2.3665 -5.5709 0.7730 33 1 0.1053 -4.9649 1.6178 34 1 2.2956 -5.3762 3.5173 35 1 1.7615 -6.6156 5.4946 36 1 3.2037 -8.1045 6.8238 37 1 4.1849 -10.1126 5.7905 38 1 3.7189 -10.6353 3.4298 39 1 2.2702 -9.1507 2.1029 40 1 -1.1040 -6.3930 2.9048 41 1 0.2094 -8.1173 5.1266 42 1 -1.1218 -6.8936 5.3036 43 1 -2.6861 -8.2756 4.0173 44 1 -1.6308 -9.6450 4.5740 45 1 -1.5090 -8.5866 1.8902 46 1 -0.0637 -9.3116 2.7190 47 1 -0.0791 -3.2131 3.3759 48 1 1.6375 -2.8052 3.1368 49 1 0.2658 -1.2407 1.8455 50 1 -0.5929 -2.5895 1.0607 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603428174.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:41 Heat of formation + Delta-G solvation = 50.862996 kcal Electronic energy + Delta-G solvation = -26948.554550 eV Core-core repulsion = 23554.703650 eV Total energy + Delta-G solvation = -3393.850900 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.36525 -39.43496 -38.76753 -36.48216 -34.21631 -32.54790 -31.79676 -31.58789 -30.35462 -27.98400 -26.53897 -26.23733 -24.35802 -23.72202 -23.45106 -22.76957 -21.70294 -20.84745 -19.88987 -18.78158 -17.54788 -16.91329 -16.74156 -16.49830 -16.39149 -15.77885 -15.54660 -15.36557 -15.15347 -14.94810 -14.76723 -14.43519 -14.17676 -14.02603 -13.86177 -13.57542 -13.23326 -13.09715 -13.00950 -12.89718 -12.57416 -12.53082 -12.47871 -12.07447 -11.96902 -11.91030 -11.85890 -11.74884 -11.57105 -11.24709 -11.19514 -11.04434 -10.99115 -10.53325 -9.70563 -9.50530 -9.23054 -8.71411 -7.90915 -5.32320 0.49813 0.57100 1.44943 1.47580 1.57226 2.50812 2.92331 3.12905 3.25002 3.66860 3.68957 3.89414 3.92107 3.97508 4.06352 4.07347 4.15824 4.17681 4.24667 4.37448 4.39497 4.50671 4.55202 4.66704 4.70692 4.71510 4.82055 4.85075 4.89753 4.95950 4.97658 4.98697 5.04869 5.09811 5.13293 5.18156 5.21512 5.25762 5.27003 5.31782 5.45952 5.47808 5.63220 5.64857 5.67301 5.69766 5.71429 5.75841 6.16481 6.22259 6.36969 6.53163 7.12737 7.84646 8.37786 9.15878 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.020016 B = 0.003151 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.556529 B = 8884.720587 C = 9477.373039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.046 4.046 3 Si 0.962 3.038 4 H -0.282 1.282 5 H -0.291 1.291 6 H -0.273 1.273 7 C -0.271 4.271 8 H 0.063 0.937 9 N -0.608 5.608 10 C 0.145 3.855 11 C -0.143 4.143 12 C 0.111 3.889 13 N -0.671 5.671 14 C 0.139 3.861 15 H 0.046 0.954 16 C -0.085 4.085 17 C -0.106 4.106 18 C -0.131 4.131 19 C -0.126 4.126 20 C -0.126 4.126 21 C -0.124 4.124 22 C -0.095 4.095 23 C -0.134 4.134 24 C -0.138 4.138 25 C -0.134 4.134 26 C -0.108 4.108 27 C 0.181 3.819 28 H 0.251 0.749 29 H 0.050 0.950 30 H 0.011 0.989 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.341 0.659 35 H 0.125 0.875 36 H 0.136 0.864 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.125 0.875 40 H 0.075 0.925 41 H 0.093 0.907 42 H 0.056 0.944 43 H 0.077 0.923 44 H 0.071 0.929 45 H 0.064 0.936 46 H 0.085 0.915 47 H 0.064 0.936 48 H 0.048 0.952 49 H 0.044 0.956 50 H -0.005 1.005 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.361 -22.402 11.404 25.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.242 4.242 3 Si 0.790 3.210 4 H -0.208 1.208 5 H -0.217 1.217 6 H -0.198 1.198 7 C -0.401 4.401 8 H 0.081 0.919 9 N -0.332 5.332 10 C 0.019 3.981 11 C -0.184 4.184 12 C 0.001 3.999 13 N -0.301 5.301 14 C 0.030 3.970 15 H 0.063 0.937 16 C -0.085 4.085 17 C -0.125 4.125 18 C -0.149 4.149 19 C -0.144 4.144 20 C -0.144 4.144 21 C -0.143 4.143 22 C -0.114 4.114 23 C -0.171 4.171 24 C -0.176 4.176 25 C -0.172 4.172 26 C -0.147 4.147 27 C 0.055 3.945 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.029 0.971 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.160 0.840 35 H 0.143 0.857 36 H 0.153 0.847 37 H 0.157 0.843 38 H 0.156 0.844 39 H 0.143 0.857 40 H 0.093 0.907 41 H 0.111 0.889 42 H 0.074 0.926 43 H 0.096 0.904 44 H 0.090 0.910 45 H 0.083 0.917 46 H 0.103 0.897 47 H 0.083 0.917 48 H 0.067 0.933 49 H 0.063 0.937 50 H 0.013 0.987 Dipole moment (debyes) X Y Z Total from point charges 2.653 -22.171 11.724 25.220 hybrid contribution 0.723 1.198 -1.038 1.742 sum 3.376 -20.973 10.686 23.779 Atomic orbital electron populations 1.70249 1.06810 1.26069 1.54301 1.25749 0.95817 1.01570 1.01038 0.85391 0.78141 0.79640 0.77864 1.20832 1.21732 1.19767 1.19427 0.95070 0.87274 1.38309 0.91933 1.44318 1.43916 1.01587 1.43379 1.20945 0.97002 0.85798 0.94324 1.22509 0.98841 0.99054 0.97979 1.21237 0.96575 0.92440 0.89624 1.60720 1.28114 1.04316 1.36938 1.20345 0.93973 0.86519 0.96154 0.93654 1.19813 0.97728 0.96178 0.94801 1.21109 0.97839 0.99860 0.93665 1.21413 0.97537 0.95182 1.00738 1.21437 0.99974 0.97577 0.95455 1.21360 0.98392 1.00019 0.94665 1.21201 0.97906 0.94832 1.00348 1.22460 0.94457 0.96642 0.97845 1.23177 0.99718 0.98427 0.95801 1.22796 0.98180 0.99713 0.96886 1.22955 1.00014 0.96491 0.97767 1.21890 1.00696 0.94584 0.97571 1.20517 0.88825 0.97474 0.87705 0.94034 0.93176 0.97128 0.92647 0.91158 0.91916 0.83974 0.85678 0.84660 0.84295 0.84400 0.85729 0.90662 0.88902 0.92552 0.90439 0.91040 0.91712 0.89667 0.91688 0.93316 0.93704 0.98657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.10 11.63 21.65 0.25 -55.85 16 2 C -0.05 -2.60 4.74 84.86 0.40 -2.19 16 3 Si 0.96 45.48 29.61 68.60 2.03 47.52 16 4 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 6 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 7 C -0.27 -15.30 9.53 84.03 0.80 -14.50 16 8 H 0.06 3.46 7.93 -2.91 -0.02 3.44 16 9 N -0.61 -31.33 2.99 -699.09 -2.09 -33.42 16 10 C 0.15 6.19 6.52 86.37 0.56 6.75 16 11 C -0.14 -4.82 5.31 30.67 0.16 -4.66 16 12 C 0.11 3.62 2.23 44.94 0.10 3.72 16 13 N -0.67 -17.75 5.45 -473.18 -2.58 -20.32 16 14 C 0.14 3.21 2.17 44.16 0.10 3.30 16 15 H 0.05 1.12 6.89 -2.39 -0.02 1.10 16 16 C -0.08 -1.72 3.46 -19.86 -0.07 -1.78 16 17 C -0.11 -2.08 6.31 22.27 0.14 -1.94 16 18 C -0.13 -2.17 10.05 22.27 0.22 -1.95 16 19 C -0.13 -1.90 10.05 22.27 0.22 -1.68 16 20 C -0.13 -1.98 10.05 22.27 0.22 -1.76 16 21 C -0.12 -2.27 8.58 22.27 0.19 -2.08 16 22 C -0.09 -2.14 3.72 -10.27 -0.04 -2.18 16 23 C -0.13 -2.76 6.92 31.18 0.22 -2.55 16 24 C -0.14 -2.52 8.09 31.18 0.25 -2.27 16 25 C -0.13 -2.58 7.48 31.12 0.23 -2.34 16 26 C -0.11 -4.16 5.69 30.67 0.17 -3.98 16 27 C 0.18 8.93 5.35 86.36 0.46 9.39 16 28 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 29 H 0.05 2.11 7.93 -2.39 -0.02 2.09 16 30 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.07 2.03 7.35 -2.39 -0.02 2.01 16 33 H 0.06 2.17 7.36 -2.39 -0.02 2.15 16 34 H 0.34 8.91 7.70 -89.69 -0.69 8.22 16 35 H 0.13 2.59 7.60 -2.91 -0.02 2.56 16 36 H 0.14 1.75 8.06 -2.91 -0.02 1.72 16 37 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 38 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 39 H 0.12 2.05 8.04 -2.91 -0.02 2.03 16 40 H 0.08 2.00 7.71 -2.39 -0.02 1.98 16 41 H 0.09 1.89 4.60 -2.39 -0.01 1.88 16 42 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.08 1.38 8.14 -2.39 -0.02 1.37 16 44 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.08 1.54 6.68 -2.38 -0.02 1.53 16 47 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 48 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 49 H 0.04 2.49 6.28 -2.39 -0.01 2.48 16 50 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 Total: -1.00 -62.81 379.06 2.19 -60.62 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: 0.21 Total: 24.14 kcal Atomic # 6 Polarization: -27.04 SS G_CDS: 4.36 Total: -22.68 kcal Atomic # 7 Polarization: -105.18 SS G_CDS: -4.41 Total: -109.59 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.52 kcal Total: -62.81 2.19 -60.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603428174.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.482 kcal (2) G-P(sol) polarization free energy of solvation -62.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds