Wall clock time and date at job start Tue Mar 31 2020 10:51:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31619 * 1
3 3 Si 1.86803 * 119.99930 * 2 1
4 4 H 1.48497 * 109.47441 * 274.98248 * 3 2 1
5 5 H 1.48506 * 109.47185 * 34.98099 * 3 2 1
6 6 H 1.48502 * 109.47497 * 154.97868 * 3 2 1
7 7 C 1.38807 * 120.00529 * 179.97438 * 2 1 3
8 8 H 1.07999 * 120.00554 * 209.71292 * 7 2 1
9 9 N 1.36939 * 119.99933 * 29.70852 * 7 2 1
10 10 C 1.46925 * 120.63312 * 206.18725 * 9 7 2
11 11 C 1.53193 * 108.77322 * 233.62996 * 10 9 7
12 12 C 1.53037 * 109.31116 * 305.36159 * 11 10 9
13 13 N 1.46901 * 109.45874 * 181.38630 * 12 11 10
14 14 C 1.46900 * 111.00117 * 153.12269 * 13 12 11
15 15 H 1.08994 * 109.46853 * 32.67262 * 14 13 12
16 16 C 1.53009 * 109.47246 * 152.67128 * 14 13 12
17 17 C 1.52996 * 109.46732 * 295.85233 * 16 14 13
18 18 C 1.52995 * 117.49715 * 242.48128 * 17 16 14
19 19 C 1.52997 * 60.00392 * 252.51558 * 18 17 16
20 20 C 1.50700 * 109.47041 * 272.66970 * 14 13 12
21 21 C 1.38233 * 119.99680 * 139.99918 * 20 14 13
22 22 C 1.38241 * 120.00167 * 180.02562 * 21 20 14
23 23 C 1.38245 * 119.99340 * 359.95523 * 22 21 20
24 24 C 1.38229 * 120.00302 * 359.97438 * 23 22 21
25 25 C 1.38237 * 120.00281 * 0.06692 * 24 23 22
26 26 C 1.53044 * 109.52693 * 61.37764 * 12 11 10
27 27 C 1.46932 * 120.62745 * 26.20650 * 9 7 2
28 28 H 0.97000 * 120.00026 * 0.02562 * 1 2 3
29 29 H 1.08999 * 109.58603 * 113.84329 * 10 9 7
30 30 H 1.08995 * 109.70353 * 353.48535 * 10 9 7
31 31 H 1.09003 * 109.49605 * 185.41698 * 11 10 9
32 32 H 1.08997 * 109.50123 * 65.31489 * 11 10 9
33 33 H 1.08999 * 109.46446 * 301.35506 * 12 11 10
34 34 H 1.00903 * 111.00333 * 277.08046 * 13 12 11
35 35 H 1.08994 * 109.46828 * 55.85057 * 16 14 13
36 36 H 1.08993 * 109.46882 * 175.85253 * 16 14 13
37 37 H 1.09003 * 115.55288 * 28.20068 * 17 16 14
38 38 H 1.09002 * 117.50307 * 0.02562 * 18 17 16
39 39 H 1.09009 * 117.49872 * 145.02623 * 18 17 16
40 40 H 1.09003 * 117.49890 * 252.51498 * 19 18 17
41 41 H 1.08995 * 117.52168 * 107.47956 * 19 18 17
42 42 H 1.08000 * 120.00392 * 359.97438 * 21 20 14
43 43 H 1.07995 * 120.00790 * 179.97438 * 22 21 20
44 44 H 1.07999 * 119.99640 * 179.72570 * 23 22 21
45 45 H 1.07995 * 119.99963 * 179.97438 * 24 23 22
46 46 H 1.07995 * 120.00717 * 179.97438 * 25 24 23
47 47 H 1.09001 * 109.49895 * 58.57658 * 26 12 11
48 48 H 1.08997 * 109.49836 * 178.67311 * 26 12 11
49 49 H 1.08995 * 109.58804 * 246.15552 * 27 9 7
50 50 H 1.08997 * 109.58344 * 6.58240 * 27 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 2.3924 2.1073 -1.3947
5 1 1.5042 2.6201 0.8027
6 1 3.5964 1.4122 0.5922
7 6 2.0103 -1.2020 0.0005
8 1 2.9838 -1.2633 0.4641
9 7 1.4607 -2.3103 -0.5867
10 6 1.8388 -3.6586 -0.1417
11 6 2.3002 -4.4678 -1.3579
12 6 1.2058 -4.4427 -2.4273
13 7 1.6312 -5.2454 -3.5818
14 6 0.4712 -5.7782 -4.3087
15 1 -0.3550 -5.0703 -4.2434
16 6 0.8440 -5.9929 -5.7771
17 6 1.1656 -4.6443 -6.4239
18 6 0.2739 -4.1843 -7.5790
19 6 1.7019 -4.6581 -7.8569
20 6 0.0562 -7.0922 -3.6985
21 6 -1.2849 -7.3927 -3.5508
22 6 -1.6656 -8.5978 -2.9906
23 6 -0.7050 -9.5027 -2.5789
24 6 0.6361 -9.2028 -2.7280
25 6 1.0168 -7.9974 -3.2874
26 6 0.9590 -2.9996 -2.8729
27 6 0.4820 -2.1737 -1.6741
28 1 -0.4850 0.8400 -0.0004
29 1 0.9788 -4.1465 0.3170
30 1 2.6506 -3.5924 0.5825
31 1 2.4920 -5.4981 -1.0578
32 1 3.2132 -4.0299 -1.7613
33 1 0.2860 -4.8580 -2.0155
34 1 2.2272 -4.7096 -4.1949
35 1 1.7167 -6.6429 -5.8390
36 1 0.0077 -6.4566 -6.3001
37 1 1.5510 -3.8794 -5.7497
38 1 -0.5421 -4.8423 -7.8778
39 1 0.0723 -3.1165 -7.6648
40 1 2.4397 -3.9021 -8.1254
41 1 1.8259 -5.6280 -8.3384
42 1 -2.0354 -6.6857 -3.8723
43 1 -2.7134 -8.8325 -2.8747
44 1 -1.0023 -10.4423 -2.1372
45 1 1.3865 -9.9095 -2.4060
46 1 2.0646 -7.7628 -3.4035
47 1 1.8848 -2.5755 -3.2619
48 1 0.1962 -2.9845 -3.6514
49 1 -0.4885 -2.5406 -1.3404
50 1 0.3996 -1.1257 -1.9619
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000610812616.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:51:48
Heat of formation + Delta-G solvation = 62.377533 kcal
Electronic energy + Delta-G solvation = -26790.427821 eV
Core-core repulsion = 23397.076229 eV
Total energy + Delta-G solvation = -3393.351592 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 314.205 amu
Computer time = 1.03 seconds
Orbital eigenvalues (eV)
-39.72119 -38.14049 -37.44069 -35.27744 -32.92069 -31.16076 -30.78447 -29.83645
-29.54805 -28.00332 -24.65565 -23.85081 -22.55208 -22.44352 -22.10708 -21.48269
-20.83444 -19.95248 -19.16818 -16.85368 -16.73640 -15.92166 -15.60811 -15.25263
-14.86536 -14.51776 -14.29723 -14.14119 -13.59696 -13.52395 -13.33246 -13.23517
-13.09718 -12.77167 -12.64697 -12.51362 -12.02057 -11.77098 -11.63406 -11.55548
-11.31073 -11.10864 -10.97311 -10.87674 -10.70325 -10.60271 -10.40379 -10.35315
-10.14153 -10.02408 -9.98637 -9.64721 -9.49327 -8.81986 -8.61335 -8.40368
-8.05622 -6.71948 -5.81797 -3.12878 1.42981 1.51629 3.39150 3.47946
3.49371 3.64871 3.85738 4.33008 4.50513 4.53417 4.74973 4.84405
4.91652 4.99836 5.06908 5.15740 5.24033 5.29721 5.36173 5.43934
5.49395 5.51890 5.56977 5.62517 5.68450 5.69170 5.75369 5.78749
5.95121 5.97738 5.98887 6.07224 6.15178 6.15422 6.20492 6.35269
6.47233 6.52703 6.57226 6.58306 6.61062 6.71006 6.80237 6.87208
7.03972 7.09841 7.26013 7.40925 7.49385 7.69802 7.85722 8.42775
9.19841 9.87314 10.45167 11.26557
Molecular weight = 314.21amu
Principal moments of inertia in cm(-1)
A = 0.012388 B = 0.003827 C = 0.003205
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2259.711897 B = 7313.815974 C = 8735.021531
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.888 5.888
2 C 0.008 3.992
3 Si 0.888 3.112
4 H -0.288 1.288
5 H -0.293 1.293
6 H -0.278 1.278
7 C -0.259 4.259
8 H 0.066 0.934
9 N -0.590 5.590
10 C 0.145 3.855
11 C -0.115 4.115
12 C 0.098 3.902
13 N -0.681 5.681
14 C 0.128 3.872
15 H 0.056 0.944
16 C -0.084 4.084
17 C -0.156 4.156
18 C -0.180 4.180
19 C -0.179 4.179
20 C -0.068 4.068
21 C -0.119 4.119
22 C -0.125 4.125
23 C -0.127 4.127
24 C -0.129 4.129
25 C -0.084 4.084
26 C -0.165 4.165
27 C 0.177 3.823
28 H 0.253 0.747
29 H 0.015 0.985
30 H 0.054 0.946
31 H 0.055 0.945
32 H 0.056 0.944
33 H 0.067 0.933
34 H 0.340 0.660
35 H 0.075 0.925
36 H 0.068 0.932
37 H 0.106 0.894
38 H 0.092 0.908
39 H 0.092 0.908
40 H 0.093 0.907
41 H 0.092 0.908
42 H 0.117 0.883
43 H 0.117 0.883
44 H 0.115 0.885
45 H 0.117 0.883
46 H 0.129 0.871
47 H 0.056 0.944
48 H 0.044 0.956
49 H 0.017 0.983
50 H 0.073 0.927
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.376 -16.316 -13.134 20.949
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.531 5.531
2 C -0.192 4.192
3 Si 0.717 3.283
4 H -0.216 1.216
5 H -0.220 1.220
6 H -0.203 1.203
7 C -0.389 4.389
8 H 0.084 0.916
9 N -0.313 5.313
10 C 0.018 3.982
11 C -0.155 4.155
12 C -0.011 4.011
13 N -0.312 5.312
14 C 0.018 3.982
15 H 0.073 0.927
16 C -0.121 4.121
17 C -0.174 4.174
18 C -0.217 4.217
19 C -0.216 4.216
20 C -0.069 4.069
21 C -0.137 4.137
22 C -0.144 4.144
23 C -0.145 4.145
24 C -0.147 4.147
25 C -0.102 4.102
26 C -0.206 4.206
27 C 0.050 3.950
28 H 0.062 0.938
29 H 0.033 0.967
30 H 0.073 0.927
31 H 0.073 0.927
32 H 0.074 0.926
33 H 0.086 0.914
34 H 0.161 0.839
35 H 0.093 0.907
36 H 0.087 0.913
37 H 0.124 0.876
38 H 0.111 0.889
39 H 0.111 0.889
40 H 0.111 0.889
41 H 0.111 0.889
42 H 0.135 0.865
43 H 0.135 0.865
44 H 0.133 0.867
45 H 0.135 0.865
46 H 0.147 0.853
47 H 0.075 0.925
48 H 0.063 0.937
49 H 0.035 0.965
50 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges -0.384 -16.749 -12.740 21.047
hybrid contribution -0.076 1.797 -0.414 1.846
sum -0.460 -14.953 -13.154 19.920
Atomic orbital electron populations
1.70227 1.05496 1.25642 1.51776 1.24867 0.94818 0.98552 1.00949
0.86496 0.79826 0.84357 0.77613 1.21556 1.21954 1.20270 1.19138
0.98471 0.87431 1.33814 0.91595 1.44091 1.49700 1.00409 1.37067
1.20913 0.97238 0.86473 0.93551 1.21953 0.97804 0.99222 0.96509
1.21499 0.98045 0.90990 0.90537 1.60706 1.17711 1.41735 1.11078
1.20349 0.93596 0.92822 0.91461 0.92653 1.21337 1.01841 0.95143
0.93826 1.22400 1.04578 0.99340 0.91107 1.23027 0.93870 1.01671
1.03165 1.22934 0.97065 1.02794 0.98828 1.19860 0.92798 0.95670
0.98542 1.21049 0.95596 0.97096 0.99966 1.21041 0.99182 0.94397
0.99735 1.21090 0.93354 0.99408 1.00671 1.21173 0.95894 0.97369
1.00232 1.21030 1.00127 0.92409 0.96678 1.22820 1.00521 0.97095
1.00123 1.20575 0.90527 0.98615 0.85245 0.93753 0.96715 0.92744
0.92672 0.92554 0.91426 0.83940 0.90657 0.91332 0.87578 0.88933
0.88910 0.88895 0.88949 0.86544 0.86527 0.86675 0.86513 0.85303
0.92532 0.93716 0.96501 0.90857
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 20.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.13 11.95 55.49 0.66 -25.47 16
2 C 0.01 0.22 4.55 -17.43 -0.08 0.14 16
3 Si 0.89 21.73 29.64 -169.99 -5.04 16.69 16
4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16
5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16
6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16
7 C -0.26 -7.21 9.50 -15.06 -0.14 -7.36 16
8 H 0.07 1.82 7.98 -52.49 -0.42 1.40 16
9 N -0.59 -14.87 2.99 -172.32 -0.52 -15.38 16
10 C 0.15 3.11 6.51 -3.71 -0.02 3.09 16
11 C -0.12 -2.05 5.69 -26.61 -0.15 -2.20 16
12 C 0.10 1.64 2.23 -67.67 -0.15 1.49 16
13 N -0.68 -9.16 5.30 -100.91 -0.53 -9.69 16
14 C 0.13 1.56 2.03 -68.86 -0.14 1.42 16
15 H 0.06 0.75 7.11 -51.93 -0.37 0.38 16
16 C -0.08 -0.86 5.06 -26.73 -0.14 -0.99 16
17 C -0.16 -1.59 5.32 -90.62 -0.48 -2.07 16
18 C -0.18 -1.71 10.18 -26.74 -0.27 -1.98 16
19 C -0.18 -1.62 10.25 -26.73 -0.27 -1.89 16
20 C -0.07 -0.85 4.74 -104.62 -0.50 -1.35 16
21 C -0.12 -1.44 9.67 -39.58 -0.38 -1.82 16
22 C -0.13 -1.40 10.05 -39.58 -0.40 -1.80 16
23 C -0.13 -1.38 10.05 -39.58 -0.40 -1.78 16
24 C -0.13 -1.45 10.05 -39.59 -0.40 -1.84 16
25 C -0.08 -1.03 9.33 -39.58 -0.37 -1.40 16
26 C -0.16 -3.05 5.31 -26.61 -0.14 -3.19 16
27 C 0.18 4.20 5.44 -3.71 -0.02 4.18 16
28 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16
29 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16
30 H 0.05 1.15 7.93 -51.93 -0.41 0.74 16
31 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16
32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16
33 H 0.07 1.24 7.70 -51.93 -0.40 0.84 16
34 H 0.34 4.44 6.30 -39.29 -0.25 4.19 16
35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16
36 H 0.07 0.68 7.87 -51.93 -0.41 0.27 16
37 H 0.11 1.22 6.74 -51.93 -0.35 0.86 16
38 H 0.09 0.81 8.03 -51.93 -0.42 0.40 16
39 H 0.09 0.88 8.14 -51.92 -0.42 0.46 16
40 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16
41 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16
42 H 0.12 1.29 8.04 -52.49 -0.42 0.87 16
43 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16
44 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16
45 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16
46 H 0.13 1.57 7.72 -52.49 -0.41 1.16 16
47 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16
48 H 0.04 0.76 7.59 -51.93 -0.39 0.37 16
49 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16
50 H 0.07 1.94 6.33 -51.93 -0.33 1.61 16
LS Contribution 392.26 15.07 5.91 5.91
Total: -1.00 -29.32 392.26 -12.75 -42.07
By element:
Atomic # 1 Polarization: 14.01 SS G_CDS: -8.78 Total: 5.23 kcal
Atomic # 6 Polarization: -14.91 SS G_CDS: -4.45 Total: -19.36 kcal
Atomic # 7 Polarization: -50.16 SS G_CDS: -0.39 Total: -50.54 kcal
Atomic # 14 Polarization: 21.73 SS G_CDS: -5.04 Total: 16.69 kcal
Total LS contribution 5.91 Total: 5.91 kcal
Total: -29.32 -12.75 -42.07 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000610812616.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 104.451 kcal
(2) G-P(sol) polarization free energy of solvation -29.322 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.129 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.751 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.073 kcal
(6) G-S(sol) free energy of system = (1) + (5) 62.378 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.03 seconds