Wall clock time and date at job start Tue Mar 31 2020 10:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48497 * 109.47441 * 274.98248 * 3 2 1 5 5 H 1.48506 * 109.47185 * 34.98099 * 3 2 1 6 6 H 1.48502 * 109.47497 * 154.97868 * 3 2 1 7 7 C 1.38807 * 120.00529 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00554 * 209.71292 * 7 2 1 9 9 N 1.36939 * 119.99933 * 29.70852 * 7 2 1 10 10 C 1.46925 * 120.63312 * 206.18725 * 9 7 2 11 11 C 1.53193 * 108.77322 * 233.62996 * 10 9 7 12 12 C 1.53037 * 109.31116 * 305.36159 * 11 10 9 13 13 N 1.46901 * 109.45874 * 181.38630 * 12 11 10 14 14 C 1.46900 * 111.00117 * 153.12269 * 13 12 11 15 15 H 1.08994 * 109.46853 * 32.67262 * 14 13 12 16 16 C 1.53009 * 109.47246 * 152.67128 * 14 13 12 17 17 C 1.52996 * 109.46732 * 295.85233 * 16 14 13 18 18 C 1.52995 * 117.49715 * 242.48128 * 17 16 14 19 19 C 1.52997 * 60.00392 * 252.51558 * 18 17 16 20 20 C 1.50700 * 109.47041 * 272.66970 * 14 13 12 21 21 C 1.38233 * 119.99680 * 139.99918 * 20 14 13 22 22 C 1.38241 * 120.00167 * 180.02562 * 21 20 14 23 23 C 1.38245 * 119.99340 * 359.95523 * 22 21 20 24 24 C 1.38229 * 120.00302 * 359.97438 * 23 22 21 25 25 C 1.38237 * 120.00281 * 0.06692 * 24 23 22 26 26 C 1.53044 * 109.52693 * 61.37764 * 12 11 10 27 27 C 1.46932 * 120.62745 * 26.20650 * 9 7 2 28 28 H 0.97000 * 120.00026 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.58603 * 113.84329 * 10 9 7 30 30 H 1.08995 * 109.70353 * 353.48535 * 10 9 7 31 31 H 1.09003 * 109.49605 * 185.41698 * 11 10 9 32 32 H 1.08997 * 109.50123 * 65.31489 * 11 10 9 33 33 H 1.08999 * 109.46446 * 301.35506 * 12 11 10 34 34 H 1.00903 * 111.00333 * 277.08046 * 13 12 11 35 35 H 1.08994 * 109.46828 * 55.85057 * 16 14 13 36 36 H 1.08993 * 109.46882 * 175.85253 * 16 14 13 37 37 H 1.09003 * 115.55288 * 28.20068 * 17 16 14 38 38 H 1.09002 * 117.50307 * 0.02562 * 18 17 16 39 39 H 1.09009 * 117.49872 * 145.02623 * 18 17 16 40 40 H 1.09003 * 117.49890 * 252.51498 * 19 18 17 41 41 H 1.08995 * 117.52168 * 107.47956 * 19 18 17 42 42 H 1.08000 * 120.00392 * 359.97438 * 21 20 14 43 43 H 1.07995 * 120.00790 * 179.97438 * 22 21 20 44 44 H 1.07999 * 119.99640 * 179.72570 * 23 22 21 45 45 H 1.07995 * 119.99963 * 179.97438 * 24 23 22 46 46 H 1.07995 * 120.00717 * 179.97438 * 25 24 23 47 47 H 1.09001 * 109.49895 * 58.57658 * 26 12 11 48 48 H 1.08997 * 109.49836 * 178.67311 * 26 12 11 49 49 H 1.08995 * 109.58804 * 246.15552 * 27 9 7 50 50 H 1.08997 * 109.58344 * 6.58240 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3924 2.1073 -1.3947 5 1 1.5042 2.6201 0.8027 6 1 3.5964 1.4122 0.5922 7 6 2.0103 -1.2020 0.0005 8 1 2.9838 -1.2633 0.4641 9 7 1.4607 -2.3103 -0.5867 10 6 1.8388 -3.6586 -0.1417 11 6 2.3002 -4.4678 -1.3579 12 6 1.2058 -4.4427 -2.4273 13 7 1.6312 -5.2454 -3.5818 14 6 0.4712 -5.7782 -4.3087 15 1 -0.3550 -5.0703 -4.2434 16 6 0.8440 -5.9929 -5.7771 17 6 1.1656 -4.6443 -6.4239 18 6 0.2739 -4.1843 -7.5790 19 6 1.7019 -4.6581 -7.8569 20 6 0.0562 -7.0922 -3.6985 21 6 -1.2849 -7.3927 -3.5508 22 6 -1.6656 -8.5978 -2.9906 23 6 -0.7050 -9.5027 -2.5789 24 6 0.6361 -9.2028 -2.7280 25 6 1.0168 -7.9974 -3.2874 26 6 0.9590 -2.9996 -2.8729 27 6 0.4820 -2.1737 -1.6741 28 1 -0.4850 0.8400 -0.0004 29 1 0.9788 -4.1465 0.3170 30 1 2.6506 -3.5924 0.5825 31 1 2.4920 -5.4981 -1.0578 32 1 3.2132 -4.0299 -1.7613 33 1 0.2860 -4.8580 -2.0155 34 1 2.2272 -4.7096 -4.1949 35 1 1.7167 -6.6429 -5.8390 36 1 0.0077 -6.4566 -6.3001 37 1 1.5510 -3.8794 -5.7497 38 1 -0.5421 -4.8423 -7.8778 39 1 0.0723 -3.1165 -7.6648 40 1 2.4397 -3.9021 -8.1254 41 1 1.8259 -5.6280 -8.3384 42 1 -2.0354 -6.6857 -3.8723 43 1 -2.7134 -8.8325 -2.8747 44 1 -1.0023 -10.4423 -2.1372 45 1 1.3865 -9.9095 -2.4060 46 1 2.0646 -7.7628 -3.4035 47 1 1.8848 -2.5755 -3.2619 48 1 0.1962 -2.9845 -3.6514 49 1 -0.4885 -2.5406 -1.3404 50 1 0.3996 -1.1257 -1.9619 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610812616.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:48 Heat of formation + Delta-G solvation = 62.377533 kcal Electronic energy + Delta-G solvation = -26790.427821 eV Core-core repulsion = 23397.076229 eV Total energy + Delta-G solvation = -3393.351592 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -39.72119 -38.14049 -37.44069 -35.27744 -32.92069 -31.16076 -30.78447 -29.83645 -29.54805 -28.00332 -24.65565 -23.85081 -22.55208 -22.44352 -22.10708 -21.48269 -20.83444 -19.95248 -19.16818 -16.85368 -16.73640 -15.92166 -15.60811 -15.25263 -14.86536 -14.51776 -14.29723 -14.14119 -13.59696 -13.52395 -13.33246 -13.23517 -13.09718 -12.77167 -12.64697 -12.51362 -12.02057 -11.77098 -11.63406 -11.55548 -11.31073 -11.10864 -10.97311 -10.87674 -10.70325 -10.60271 -10.40379 -10.35315 -10.14153 -10.02408 -9.98637 -9.64721 -9.49327 -8.81986 -8.61335 -8.40368 -8.05622 -6.71948 -5.81797 -3.12878 1.42981 1.51629 3.39150 3.47946 3.49371 3.64871 3.85738 4.33008 4.50513 4.53417 4.74973 4.84405 4.91652 4.99836 5.06908 5.15740 5.24033 5.29721 5.36173 5.43934 5.49395 5.51890 5.56977 5.62517 5.68450 5.69170 5.75369 5.78749 5.95121 5.97738 5.98887 6.07224 6.15178 6.15422 6.20492 6.35269 6.47233 6.52703 6.57226 6.58306 6.61062 6.71006 6.80237 6.87208 7.03972 7.09841 7.26013 7.40925 7.49385 7.69802 7.85722 8.42775 9.19841 9.87314 10.45167 11.26557 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.012388 B = 0.003827 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.711897 B = 7313.815974 C = 8735.021531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.008 3.992 3 Si 0.888 3.112 4 H -0.288 1.288 5 H -0.293 1.293 6 H -0.278 1.278 7 C -0.259 4.259 8 H 0.066 0.934 9 N -0.590 5.590 10 C 0.145 3.855 11 C -0.115 4.115 12 C 0.098 3.902 13 N -0.681 5.681 14 C 0.128 3.872 15 H 0.056 0.944 16 C -0.084 4.084 17 C -0.156 4.156 18 C -0.180 4.180 19 C -0.179 4.179 20 C -0.068 4.068 21 C -0.119 4.119 22 C -0.125 4.125 23 C -0.127 4.127 24 C -0.129 4.129 25 C -0.084 4.084 26 C -0.165 4.165 27 C 0.177 3.823 28 H 0.253 0.747 29 H 0.015 0.985 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.340 0.660 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.106 0.894 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.117 0.883 43 H 0.117 0.883 44 H 0.115 0.885 45 H 0.117 0.883 46 H 0.129 0.871 47 H 0.056 0.944 48 H 0.044 0.956 49 H 0.017 0.983 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.376 -16.316 -13.134 20.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.192 4.192 3 Si 0.717 3.283 4 H -0.216 1.216 5 H -0.220 1.220 6 H -0.203 1.203 7 C -0.389 4.389 8 H 0.084 0.916 9 N -0.313 5.313 10 C 0.018 3.982 11 C -0.155 4.155 12 C -0.011 4.011 13 N -0.312 5.312 14 C 0.018 3.982 15 H 0.073 0.927 16 C -0.121 4.121 17 C -0.174 4.174 18 C -0.217 4.217 19 C -0.216 4.216 20 C -0.069 4.069 21 C -0.137 4.137 22 C -0.144 4.144 23 C -0.145 4.145 24 C -0.147 4.147 25 C -0.102 4.102 26 C -0.206 4.206 27 C 0.050 3.950 28 H 0.062 0.938 29 H 0.033 0.967 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.161 0.839 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.124 0.876 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.135 0.865 43 H 0.135 0.865 44 H 0.133 0.867 45 H 0.135 0.865 46 H 0.147 0.853 47 H 0.075 0.925 48 H 0.063 0.937 49 H 0.035 0.965 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.384 -16.749 -12.740 21.047 hybrid contribution -0.076 1.797 -0.414 1.846 sum -0.460 -14.953 -13.154 19.920 Atomic orbital electron populations 1.70227 1.05496 1.25642 1.51776 1.24867 0.94818 0.98552 1.00949 0.86496 0.79826 0.84357 0.77613 1.21556 1.21954 1.20270 1.19138 0.98471 0.87431 1.33814 0.91595 1.44091 1.49700 1.00409 1.37067 1.20913 0.97238 0.86473 0.93551 1.21953 0.97804 0.99222 0.96509 1.21499 0.98045 0.90990 0.90537 1.60706 1.17711 1.41735 1.11078 1.20349 0.93596 0.92822 0.91461 0.92653 1.21337 1.01841 0.95143 0.93826 1.22400 1.04578 0.99340 0.91107 1.23027 0.93870 1.01671 1.03165 1.22934 0.97065 1.02794 0.98828 1.19860 0.92798 0.95670 0.98542 1.21049 0.95596 0.97096 0.99966 1.21041 0.99182 0.94397 0.99735 1.21090 0.93354 0.99408 1.00671 1.21173 0.95894 0.97369 1.00232 1.21030 1.00127 0.92409 0.96678 1.22820 1.00521 0.97095 1.00123 1.20575 0.90527 0.98615 0.85245 0.93753 0.96715 0.92744 0.92672 0.92554 0.91426 0.83940 0.90657 0.91332 0.87578 0.88933 0.88910 0.88895 0.88949 0.86544 0.86527 0.86675 0.86513 0.85303 0.92532 0.93716 0.96501 0.90857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.13 11.95 55.49 0.66 -25.47 16 2 C 0.01 0.22 4.55 -17.43 -0.08 0.14 16 3 Si 0.89 21.73 29.64 -169.99 -5.04 16.69 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.26 -7.21 9.50 -15.06 -0.14 -7.36 16 8 H 0.07 1.82 7.98 -52.49 -0.42 1.40 16 9 N -0.59 -14.87 2.99 -172.32 -0.52 -15.38 16 10 C 0.15 3.11 6.51 -3.71 -0.02 3.09 16 11 C -0.12 -2.05 5.69 -26.61 -0.15 -2.20 16 12 C 0.10 1.64 2.23 -67.67 -0.15 1.49 16 13 N -0.68 -9.16 5.30 -100.91 -0.53 -9.69 16 14 C 0.13 1.56 2.03 -68.86 -0.14 1.42 16 15 H 0.06 0.75 7.11 -51.93 -0.37 0.38 16 16 C -0.08 -0.86 5.06 -26.73 -0.14 -0.99 16 17 C -0.16 -1.59 5.32 -90.62 -0.48 -2.07 16 18 C -0.18 -1.71 10.18 -26.74 -0.27 -1.98 16 19 C -0.18 -1.62 10.25 -26.73 -0.27 -1.89 16 20 C -0.07 -0.85 4.74 -104.62 -0.50 -1.35 16 21 C -0.12 -1.44 9.67 -39.58 -0.38 -1.82 16 22 C -0.13 -1.40 10.05 -39.58 -0.40 -1.80 16 23 C -0.13 -1.38 10.05 -39.58 -0.40 -1.78 16 24 C -0.13 -1.45 10.05 -39.59 -0.40 -1.84 16 25 C -0.08 -1.03 9.33 -39.58 -0.37 -1.40 16 26 C -0.16 -3.05 5.31 -26.61 -0.14 -3.19 16 27 C 0.18 4.20 5.44 -3.71 -0.02 4.18 16 28 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 1.15 7.93 -51.93 -0.41 0.74 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.07 1.24 7.70 -51.93 -0.40 0.84 16 34 H 0.34 4.44 6.30 -39.29 -0.25 4.19 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.68 7.87 -51.93 -0.41 0.27 16 37 H 0.11 1.22 6.74 -51.93 -0.35 0.86 16 38 H 0.09 0.81 8.03 -51.93 -0.42 0.40 16 39 H 0.09 0.88 8.14 -51.92 -0.42 0.46 16 40 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.12 1.29 8.04 -52.49 -0.42 0.87 16 43 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 44 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 45 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 46 H 0.13 1.57 7.72 -52.49 -0.41 1.16 16 47 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 48 H 0.04 0.76 7.59 -51.93 -0.39 0.37 16 49 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 50 H 0.07 1.94 6.33 -51.93 -0.33 1.61 16 LS Contribution 392.26 15.07 5.91 5.91 Total: -1.00 -29.32 392.26 -12.75 -42.07 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -8.78 Total: 5.23 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: -4.45 Total: -19.36 kcal Atomic # 7 Polarization: -50.16 SS G_CDS: -0.39 Total: -50.54 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.04 Total: 16.69 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -29.32 -12.75 -42.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610812616.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.451 kcal (2) G-P(sol) polarization free energy of solvation -29.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds