Wall clock time and date at job start Tue Mar 31 2020 10:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48497 * 109.47441 * 274.98248 * 3 2 1 5 5 H 1.48506 * 109.47185 * 34.98099 * 3 2 1 6 6 H 1.48502 * 109.47497 * 154.97868 * 3 2 1 7 7 C 1.38807 * 120.00529 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00554 * 209.71292 * 7 2 1 9 9 N 1.36939 * 119.99933 * 29.70852 * 7 2 1 10 10 C 1.46925 * 120.63312 * 206.18725 * 9 7 2 11 11 C 1.53193 * 108.77322 * 233.62996 * 10 9 7 12 12 C 1.53037 * 109.31116 * 305.36159 * 11 10 9 13 13 N 1.46901 * 109.45874 * 181.38630 * 12 11 10 14 14 C 1.46900 * 111.00117 * 153.12269 * 13 12 11 15 15 H 1.08994 * 109.46853 * 32.67262 * 14 13 12 16 16 C 1.53009 * 109.47246 * 152.67128 * 14 13 12 17 17 C 1.52996 * 109.46732 * 295.85233 * 16 14 13 18 18 C 1.52995 * 117.49715 * 242.48128 * 17 16 14 19 19 C 1.52997 * 60.00392 * 252.51558 * 18 17 16 20 20 C 1.50700 * 109.47041 * 272.66970 * 14 13 12 21 21 C 1.38233 * 119.99680 * 139.99918 * 20 14 13 22 22 C 1.38241 * 120.00167 * 180.02562 * 21 20 14 23 23 C 1.38245 * 119.99340 * 359.95523 * 22 21 20 24 24 C 1.38229 * 120.00302 * 359.97438 * 23 22 21 25 25 C 1.38237 * 120.00281 * 0.06692 * 24 23 22 26 26 C 1.53044 * 109.52693 * 61.37764 * 12 11 10 27 27 C 1.46932 * 120.62745 * 26.20650 * 9 7 2 28 28 H 0.97000 * 120.00026 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.58603 * 113.84329 * 10 9 7 30 30 H 1.08995 * 109.70353 * 353.48535 * 10 9 7 31 31 H 1.09003 * 109.49605 * 185.41698 * 11 10 9 32 32 H 1.08997 * 109.50123 * 65.31489 * 11 10 9 33 33 H 1.08999 * 109.46446 * 301.35506 * 12 11 10 34 34 H 1.00903 * 111.00333 * 277.08046 * 13 12 11 35 35 H 1.08994 * 109.46828 * 55.85057 * 16 14 13 36 36 H 1.08993 * 109.46882 * 175.85253 * 16 14 13 37 37 H 1.09003 * 115.55288 * 28.20068 * 17 16 14 38 38 H 1.09002 * 117.50307 * 0.02562 * 18 17 16 39 39 H 1.09009 * 117.49872 * 145.02623 * 18 17 16 40 40 H 1.09003 * 117.49890 * 252.51498 * 19 18 17 41 41 H 1.08995 * 117.52168 * 107.47956 * 19 18 17 42 42 H 1.08000 * 120.00392 * 359.97438 * 21 20 14 43 43 H 1.07995 * 120.00790 * 179.97438 * 22 21 20 44 44 H 1.07999 * 119.99640 * 179.72570 * 23 22 21 45 45 H 1.07995 * 119.99963 * 179.97438 * 24 23 22 46 46 H 1.07995 * 120.00717 * 179.97438 * 25 24 23 47 47 H 1.09001 * 109.49895 * 58.57658 * 26 12 11 48 48 H 1.08997 * 109.49836 * 178.67311 * 26 12 11 49 49 H 1.08995 * 109.58804 * 246.15552 * 27 9 7 50 50 H 1.08997 * 109.58344 * 6.58240 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3924 2.1073 -1.3947 5 1 1.5042 2.6201 0.8027 6 1 3.5964 1.4122 0.5922 7 6 2.0103 -1.2020 0.0005 8 1 2.9838 -1.2633 0.4641 9 7 1.4607 -2.3103 -0.5867 10 6 1.8388 -3.6586 -0.1417 11 6 2.3002 -4.4678 -1.3579 12 6 1.2058 -4.4427 -2.4273 13 7 1.6312 -5.2454 -3.5818 14 6 0.4712 -5.7782 -4.3087 15 1 -0.3550 -5.0703 -4.2434 16 6 0.8440 -5.9929 -5.7771 17 6 1.1656 -4.6443 -6.4239 18 6 0.2739 -4.1843 -7.5790 19 6 1.7019 -4.6581 -7.8569 20 6 0.0562 -7.0922 -3.6985 21 6 -1.2849 -7.3927 -3.5508 22 6 -1.6656 -8.5978 -2.9906 23 6 -0.7050 -9.5027 -2.5789 24 6 0.6361 -9.2028 -2.7280 25 6 1.0168 -7.9974 -3.2874 26 6 0.9590 -2.9996 -2.8729 27 6 0.4820 -2.1737 -1.6741 28 1 -0.4850 0.8400 -0.0004 29 1 0.9788 -4.1465 0.3170 30 1 2.6506 -3.5924 0.5825 31 1 2.4920 -5.4981 -1.0578 32 1 3.2132 -4.0299 -1.7613 33 1 0.2860 -4.8580 -2.0155 34 1 2.2272 -4.7096 -4.1949 35 1 1.7167 -6.6429 -5.8390 36 1 0.0077 -6.4566 -6.3001 37 1 1.5510 -3.8794 -5.7497 38 1 -0.5421 -4.8423 -7.8778 39 1 0.0723 -3.1165 -7.6648 40 1 2.4397 -3.9021 -8.1254 41 1 1.8259 -5.6280 -8.3384 42 1 -2.0354 -6.6857 -3.8723 43 1 -2.7134 -8.8325 -2.8747 44 1 -1.0023 -10.4423 -2.1372 45 1 1.3865 -9.9095 -2.4060 46 1 2.0646 -7.7628 -3.4035 47 1 1.8848 -2.5755 -3.2619 48 1 0.1962 -2.9845 -3.6514 49 1 -0.4885 -2.5406 -1.3404 50 1 0.3996 -1.1257 -1.9619 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610812616.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:47 Heat of formation + Delta-G solvation = 49.099144 kcal Electronic energy + Delta-G solvation = -26791.003615 eV Core-core repulsion = 23397.076229 eV Total energy + Delta-G solvation = -3393.927386 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.71964 -39.37425 -38.51155 -36.60222 -34.54704 -32.74705 -31.69047 -31.53746 -30.67977 -29.30179 -26.45495 -24.87127 -23.86281 -23.43301 -23.20162 -23.05323 -21.67992 -20.95714 -20.73765 -18.78801 -17.60074 -17.02237 -16.75770 -16.58415 -16.16578 -15.94358 -15.41788 -15.25398 -15.12347 -14.97466 -14.78310 -14.54231 -14.18779 -14.09328 -13.76789 -13.61965 -13.41511 -13.12614 -12.97415 -12.69700 -12.61474 -12.38986 -12.33602 -12.26717 -12.18040 -11.99005 -11.90134 -11.75339 -11.65651 -11.39847 -11.19756 -11.06021 -10.77853 -10.52341 -9.69585 -9.50268 -9.29913 -8.77521 -7.94249 -5.28900 0.55233 0.63880 1.43936 1.46866 1.56132 2.50317 2.88535 2.96352 3.15117 3.25618 3.65992 3.66768 3.89524 4.00269 4.06718 4.10133 4.13109 4.17949 4.28168 4.32863 4.39927 4.41244 4.48082 4.54673 4.67284 4.68720 4.74521 4.79469 4.81178 4.82648 4.84477 4.96198 5.02086 5.06144 5.14087 5.20992 5.22962 5.25796 5.27915 5.31526 5.32385 5.39220 5.40678 5.60256 5.67258 5.68399 5.74181 5.81061 6.20668 6.24511 6.32995 6.55716 7.09711 7.83327 8.36944 9.12271 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.012388 B = 0.003827 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.711897 B = 7313.815974 C = 8735.021531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.041 4.041 3 Si 0.954 3.046 4 H -0.286 1.286 5 H -0.296 1.296 6 H -0.267 1.267 7 C -0.271 4.271 8 H 0.065 0.935 9 N -0.606 5.606 10 C 0.141 3.859 11 C -0.101 4.101 12 C 0.114 3.886 13 N -0.668 5.668 14 C 0.132 3.868 15 H 0.041 0.959 16 C -0.072 4.072 17 C -0.167 4.167 18 C -0.184 4.184 19 C -0.169 4.169 20 C -0.081 4.081 21 C -0.135 4.135 22 C -0.132 4.132 23 C -0.132 4.132 24 C -0.134 4.134 25 C -0.096 4.096 26 C -0.147 4.147 27 C 0.184 3.816 28 H 0.250 0.750 29 H 0.006 0.994 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.346 0.654 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.103 0.897 42 H 0.119 0.881 43 H 0.134 0.866 44 H 0.138 0.862 45 H 0.136 0.864 46 H 0.129 0.871 47 H 0.056 0.944 48 H 0.059 0.941 49 H -0.008 1.008 50 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.654 -17.859 -14.331 22.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.238 4.238 3 Si 0.782 3.218 4 H -0.213 1.213 5 H -0.222 1.222 6 H -0.191 1.191 7 C -0.401 4.401 8 H 0.083 0.917 9 N -0.330 5.330 10 C 0.015 3.985 11 C -0.140 4.140 12 C 0.004 3.996 13 N -0.300 5.300 14 C 0.022 3.978 15 H 0.059 0.941 16 C -0.109 4.109 17 C -0.185 4.185 18 C -0.221 4.221 19 C -0.206 4.206 20 C -0.082 4.082 21 C -0.153 4.153 22 C -0.150 4.150 23 C -0.150 4.150 24 C -0.152 4.152 25 C -0.115 4.115 26 C -0.187 4.187 27 C 0.057 3.943 28 H 0.059 0.941 29 H 0.024 0.976 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.167 0.833 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.111 0.889 38 H 0.118 0.882 39 H 0.108 0.892 40 H 0.115 0.885 41 H 0.122 0.878 42 H 0.137 0.863 43 H 0.152 0.848 44 H 0.156 0.844 45 H 0.154 0.846 46 H 0.147 0.853 47 H 0.075 0.925 48 H 0.077 0.923 49 H 0.010 0.990 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 0.669 -18.321 -13.951 23.037 hybrid contribution -0.448 2.205 0.002 2.250 sum 0.221 -16.116 -13.949 21.315 Atomic orbital electron populations 1.70336 1.06982 1.26117 1.53519 1.25612 0.95498 1.01510 1.01212 0.85454 0.78806 0.80104 0.77415 1.21330 1.22245 1.19106 1.19450 0.98460 0.88638 1.33574 0.91681 1.44356 1.49760 1.01282 1.37579 1.21056 0.96844 0.85261 0.95333 1.21760 0.97758 0.99422 0.95062 1.21194 0.97038 0.89870 0.91495 1.60636 1.18181 1.40524 1.10612 1.20330 0.92393 0.92427 0.92608 0.94140 1.21228 1.02165 0.95258 0.92292 1.22333 1.05673 0.98978 0.91543 1.23090 0.94523 1.01730 1.02723 1.23000 0.96676 1.03421 0.97489 1.19921 0.93202 0.95804 0.99248 1.21227 0.95667 0.97847 1.00609 1.21334 1.00409 0.94081 0.99187 1.21418 0.93171 1.00208 1.00163 1.21457 0.96709 0.97336 0.99680 1.21116 1.00034 0.92984 0.97318 1.22602 1.00628 0.97479 0.98027 1.20404 0.89597 0.97444 0.86818 0.94071 0.97599 0.92749 0.90700 0.92524 0.92916 0.83296 0.90256 0.90698 0.88906 0.88176 0.89241 0.88533 0.87812 0.86262 0.84765 0.84413 0.84625 0.85331 0.92522 0.92252 0.98975 0.94159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.95 11.95 21.65 0.26 -55.69 16 2 C -0.04 -2.36 4.55 84.86 0.39 -1.98 16 3 Si 0.95 45.29 29.64 68.60 2.03 47.32 16 4 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 5 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 7 C -0.27 -15.29 9.50 84.03 0.80 -14.50 16 8 H 0.07 3.61 7.98 -2.91 -0.02 3.58 16 9 N -0.61 -31.13 2.99 -699.10 -2.09 -33.22 16 10 C 0.14 6.07 6.51 86.36 0.56 6.63 16 11 C -0.10 -3.46 5.69 30.67 0.17 -3.29 16 12 C 0.11 3.72 2.23 44.94 0.10 3.82 16 13 N -0.67 -17.06 5.30 -473.16 -2.51 -19.57 16 14 C 0.13 3.08 2.03 44.17 0.09 3.17 16 15 H 0.04 1.08 7.11 -2.39 -0.02 1.06 16 16 C -0.07 -1.35 5.06 30.60 0.15 -1.20 16 17 C -0.17 -3.16 5.32 -10.79 -0.06 -3.22 16 18 C -0.18 -3.22 10.18 30.59 0.31 -2.90 16 19 C -0.17 -2.71 10.25 30.60 0.31 -2.39 16 20 C -0.08 -1.94 4.74 -19.87 -0.09 -2.03 16 21 C -0.13 -3.14 9.67 22.27 0.22 -2.93 16 22 C -0.13 -2.74 10.05 22.27 0.22 -2.51 16 23 C -0.13 -2.56 10.05 22.27 0.22 -2.33 16 24 C -0.13 -2.73 10.05 22.27 0.22 -2.50 16 25 C -0.10 -2.21 9.33 22.27 0.21 -2.00 16 26 C -0.15 -5.43 5.31 30.67 0.16 -5.27 16 27 C 0.18 9.00 5.44 86.36 0.47 9.47 16 28 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 29 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.05 2.30 7.93 -2.39 -0.02 2.28 16 31 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.05 1.92 7.70 -2.39 -0.02 1.90 16 34 H 0.35 8.44 6.30 -89.69 -0.57 7.88 16 35 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.07 1.34 7.87 -2.39 -0.02 1.32 16 37 H 0.09 2.02 6.74 -2.39 -0.02 2.00 16 38 H 0.10 1.59 8.03 -2.39 -0.02 1.57 16 39 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 40 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.10 1.43 8.14 -2.39 -0.02 1.42 16 42 H 0.12 2.59 8.04 -2.91 -0.02 2.57 16 43 H 0.13 2.20 8.06 -2.91 -0.02 2.18 16 44 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 45 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 46 H 0.13 2.89 7.72 -2.91 -0.02 2.86 16 47 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 48 H 0.06 2.01 7.59 -2.39 -0.02 2.00 16 49 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 50 H 0.04 2.21 6.33 -2.39 -0.02 2.19 16 Total: -1.00 -63.63 392.26 2.49 -61.15 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: 0.33 Total: 25.97 kcal Atomic # 6 Polarization: -30.42 SS G_CDS: 4.47 Total: -25.96 kcal Atomic # 7 Polarization: -104.14 SS G_CDS: -4.34 Total: -108.48 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -63.63 2.49 -61.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610812616.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.246 kcal (2) G-P(sol) polarization free energy of solvation -63.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds