Wall clock time and date at job start Tue Mar 31 2020 10:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99942 * 2 1 4 4 H 1.48494 * 109.47343 * 274.06937 * 3 2 1 5 5 H 1.48505 * 109.47215 * 34.06769 * 3 2 1 6 6 H 1.48496 * 109.47069 * 154.06642 * 3 2 1 7 7 C 1.38802 * 120.00077 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00452 * 197.50044 * 7 2 1 9 9 N 1.36945 * 120.00107 * 17.50663 * 7 2 1 10 10 C 1.46932 * 120.62744 * 207.96337 * 9 7 2 11 11 C 1.53194 * 108.77108 * 233.62316 * 10 9 7 12 12 C 1.53048 * 109.31166 * 305.36803 * 11 10 9 13 13 N 1.46904 * 109.45530 * 181.38688 * 12 11 10 14 14 C 1.46906 * 110.99516 * 155.00110 * 13 12 11 15 15 H 1.08992 * 110.01987 * 34.29690 * 14 13 12 16 16 C 1.54268 * 110.02779 * 272.90430 * 14 13 12 17 17 C 1.55020 * 104.13119 * 217.07060 * 16 14 13 18 18 C 1.54889 * 102.75584 * 37.95477 * 17 16 14 19 19 C 1.53872 * 110.02859 * 155.68795 * 14 13 12 20 20 H 1.08999 * 110.03652 * 238.61148 * 19 14 13 21 21 C 1.50700 * 110.03698 * 0.04601 * 19 14 13 22 22 C 1.38236 * 119.99794 * 59.72419 * 21 19 14 23 23 C 1.38233 * 119.99676 * 179.76767 * 22 21 19 24 24 C 1.38234 * 120.00233 * 0.48637 * 23 22 21 25 25 C 1.38230 * 119.99799 * 359.79127 * 24 23 22 26 26 C 1.38231 * 120.00110 * 240.00205 * 21 19 14 27 27 C 1.53035 * 109.53914 * 61.36297 * 12 11 10 28 28 C 1.46926 * 120.63021 * 27.97549 * 9 7 2 29 29 H 0.96996 * 119.99736 * 359.97438 * 1 2 3 30 30 H 1.09007 * 109.58412 * 113.84142 * 10 9 7 31 31 H 1.08994 * 109.58899 * 353.40984 * 10 9 7 32 32 H 1.08994 * 109.50127 * 185.41778 * 11 10 9 33 33 H 1.08996 * 109.49892 * 65.31703 * 11 10 9 34 34 H 1.09003 * 109.45999 * 301.35515 * 12 11 10 35 35 H 1.00900 * 110.99920 * 278.94778 * 13 12 11 36 36 H 1.08998 * 110.48781 * 335.72964 * 16 14 13 37 37 H 1.08991 * 110.48853 * 98.38561 * 16 14 13 38 38 H 1.09002 * 110.76202 * 279.62711 * 17 16 14 39 39 H 1.08998 * 110.89834 * 156.34003 * 17 16 14 40 40 H 1.09000 * 110.48035 * 203.36816 * 18 17 16 41 41 H 1.08998 * 110.60247 * 80.77782 * 18 17 16 42 42 H 1.07996 * 120.00112 * 0.02562 * 22 21 19 43 43 H 1.08006 * 119.99869 * 180.25275 * 23 22 21 44 44 H 1.08001 * 120.00306 * 179.76749 * 24 23 22 45 45 H 1.08006 * 119.99983 * 179.97438 * 25 24 23 46 46 H 1.08006 * 119.99901 * 359.97438 * 26 21 19 47 47 H 1.09001 * 109.49547 * 58.58799 * 27 12 11 48 48 H 1.09006 * 109.49965 * 178.67995 * 27 12 11 49 49 H 1.09003 * 109.58921 * 246.16401 * 28 9 7 50 50 H 1.08994 * 109.58619 * 6.58614 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4117 2.0961 -1.3965 5 1 1.4933 2.6264 0.7843 6 1 3.5881 1.4169 0.6123 7 6 2.0103 -1.2021 0.0005 8 1 3.0527 -1.2236 0.2818 9 7 1.3731 -2.3608 -0.3557 10 6 1.8152 -3.6542 0.1832 11 6 2.0771 -4.6111 -0.9841 12 6 0.8272 -4.6905 -1.8636 13 7 1.0634 -5.6328 -2.9656 14 6 -0.2019 -6.1907 -3.4615 15 1 -0.9909 -5.4415 -3.3966 16 6 -0.5880 -7.4375 -2.6391 17 6 -1.2145 -8.3991 -3.6812 18 6 -0.3291 -8.1722 -4.9317 19 6 -0.0369 -6.6575 -4.9184 20 1 -0.7459 -6.1349 -5.5606 21 6 1.3720 -6.3995 -5.3869 22 6 2.4372 -6.9861 -4.7296 23 6 3.7293 -6.7532 -5.1623 24 6 3.9567 -5.9259 -6.2460 25 6 2.8919 -5.3347 -6.8998 26 6 1.5994 -5.5717 -6.4704 27 6 0.5145 -3.3057 -2.4350 28 6 0.2348 -2.3341 -1.2843 29 1 -0.4849 0.8400 0.0004 30 1 1.0379 -4.0668 0.8266 31 1 2.7322 -3.5172 0.7562 32 1 2.3127 -5.6021 -0.5964 33 1 2.9153 -4.2426 -1.5755 34 1 -0.0164 -5.0353 -1.2656 35 1 1.5821 -5.1941 -3.7116 36 1 0.2972 -7.8867 -2.1889 37 1 -1.3173 -7.1776 -1.8720 38 1 -2.2496 -8.1258 -3.8859 39 1 -1.1491 -9.4336 -3.3442 40 1 -0.8697 -8.4485 -5.8369 41 1 0.5979 -8.7402 -4.8535 42 1 2.2597 -7.6295 -3.8806 43 1 4.5613 -7.2148 -4.6512 44 1 4.9664 -5.7410 -6.5818 45 1 3.0696 -4.6879 -7.7463 46 1 0.7674 -5.1102 -6.9814 47 1 1.3674 -2.9495 -3.0128 48 1 -0.3621 -3.3677 -3.0800 49 1 -0.6712 -2.6390 -0.7606 50 1 0.1091 -1.3261 -1.6794 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610812636.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:13 Heat of formation + Delta-G solvation = 39.345850 kcal Electronic energy + Delta-G solvation = -27311.059378 eV Core-core repulsion = 23916.709057 eV Total energy + Delta-G solvation = -3394.350321 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.29447 -38.08391 -37.11292 -34.21658 -32.02430 -31.68212 -30.83130 -29.81630 -29.31701 -27.59386 -26.48439 -24.33353 -22.63875 -22.24056 -22.02898 -21.45585 -20.45453 -19.41163 -18.90957 -16.87302 -16.79738 -15.96956 -15.48814 -14.86852 -14.77988 -14.59184 -14.40018 -14.13612 -13.63855 -13.43930 -13.35751 -13.15821 -13.00090 -12.85386 -12.43441 -12.38895 -11.90016 -11.51809 -11.30456 -11.23430 -11.14994 -11.07884 -10.91298 -10.81096 -10.71647 -10.68846 -10.63598 -10.43700 -10.31599 -10.09877 -9.94050 -9.60987 -9.44259 -8.83962 -8.56554 -8.45440 -7.91010 -6.62083 -5.75127 -3.16792 1.38012 1.48781 3.39620 3.46631 3.48101 3.81627 4.41470 4.51073 4.53082 4.67246 4.75657 4.98705 5.04097 5.13317 5.23346 5.36634 5.40067 5.44848 5.49517 5.52688 5.56307 5.61304 5.65876 5.69486 5.73169 5.82341 5.89525 5.92754 6.00567 6.04869 6.11113 6.14022 6.19773 6.23067 6.36211 6.40235 6.51409 6.58972 6.59519 6.64176 6.69489 6.73344 6.75679 6.89693 7.05781 7.07891 7.39270 7.53416 7.66964 7.80358 7.84137 8.49407 9.25645 9.89741 10.46849 11.33352 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.015085 B = 0.003797 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.752576 B = 7372.600956 C = 8277.691039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.001 3.999 3 Si 0.901 3.099 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.250 4.250 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.145 3.855 11 C -0.115 4.115 12 C 0.093 3.907 13 N -0.680 5.680 14 C 0.088 3.912 15 H 0.048 0.952 16 C -0.112 4.112 17 C -0.125 4.125 18 C -0.111 4.111 19 C -0.056 4.056 20 H 0.076 0.924 21 C -0.079 4.079 22 C -0.076 4.076 23 C -0.126 4.126 24 C -0.122 4.122 25 C -0.126 4.126 26 C -0.120 4.120 27 C -0.165 4.165 28 C 0.176 3.824 29 H 0.252 0.748 30 H 0.015 0.985 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.342 0.658 36 H 0.077 0.923 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.070 0.930 42 H 0.130 0.870 43 H 0.119 0.881 44 H 0.116 0.884 45 H 0.117 0.883 46 H 0.116 0.884 47 H 0.053 0.947 48 H 0.041 0.959 49 H 0.015 0.985 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.938 -17.183 -12.581 21.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.379 4.379 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.018 3.982 11 C -0.154 4.154 12 C -0.016 4.016 13 N -0.314 5.314 14 C -0.022 4.022 15 H 0.066 0.934 16 C -0.150 4.150 17 C -0.163 4.163 18 C -0.149 4.149 19 C -0.075 4.075 20 H 0.094 0.906 21 C -0.080 4.080 22 C -0.094 4.094 23 C -0.144 4.144 24 C -0.141 4.141 25 C -0.145 4.145 26 C -0.138 4.138 27 C -0.206 4.206 28 C 0.050 3.950 29 H 0.062 0.938 30 H 0.033 0.967 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.165 0.835 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.148 0.852 43 H 0.137 0.863 44 H 0.134 0.866 45 H 0.135 0.865 46 H 0.134 0.866 47 H 0.071 0.929 48 H 0.060 0.940 49 H 0.033 0.967 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.973 -17.551 -12.140 21.363 hybrid contribution 0.003 1.888 -0.553 1.967 sum 0.975 -15.663 -12.693 20.184 Atomic orbital electron populations 1.70047 1.05257 1.25343 1.54207 1.25022 0.95253 0.98351 1.01082 0.86294 0.79214 0.83850 0.77561 1.21567 1.21807 1.20376 1.19222 0.92750 0.84984 1.40988 0.91718 1.44054 1.36342 1.01506 1.49567 1.20929 0.97438 0.86821 0.93006 1.21943 0.96887 0.98785 0.97829 1.21524 0.98045 0.89983 0.92043 1.61270 1.18158 1.38892 1.13030 1.22085 0.92062 0.96144 0.91946 0.93367 1.22459 1.00494 0.94933 0.97147 1.22502 0.98859 0.99403 0.95530 1.22420 1.00000 0.94495 0.97955 1.21008 0.93124 0.97030 0.96368 0.90577 1.19680 0.95075 0.97723 0.95488 1.21035 0.91554 0.98701 0.98131 1.21155 0.97092 0.99205 0.96972 1.21117 0.98722 0.97733 0.96486 1.21051 0.92768 1.00295 1.00337 1.21070 0.96941 0.98750 0.97044 1.22823 0.99726 0.97674 1.00331 1.20666 0.88671 0.98023 0.87675 0.93753 0.96679 0.92866 0.92768 0.92751 0.91563 0.83509 0.90430 0.92098 0.91771 0.91618 0.91954 0.91090 0.85212 0.86343 0.86576 0.86524 0.86607 0.92864 0.94022 0.96667 0.89769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.70 11.22 55.49 0.62 -26.08 16 2 C 0.00 0.03 4.90 -17.43 -0.09 -0.05 16 3 Si 0.90 22.08 29.59 -169.99 -5.03 17.05 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.25 -7.01 9.58 -15.06 -0.14 -7.16 16 8 H 0.07 1.79 7.89 -52.49 -0.41 1.38 16 9 N -0.59 -15.18 2.99 -172.32 -0.52 -15.69 16 10 C 0.14 3.14 6.52 -3.71 -0.02 3.11 16 11 C -0.11 -2.09 5.69 -26.61 -0.15 -2.24 16 12 C 0.09 1.61 2.27 -67.67 -0.15 1.46 16 13 N -0.68 -9.72 4.34 -98.52 -0.43 -10.15 16 14 C 0.09 1.10 2.94 -66.59 -0.20 0.91 16 15 H 0.05 0.68 7.15 -51.93 -0.37 0.31 16 16 C -0.11 -1.26 6.37 -25.00 -0.16 -1.42 16 17 C -0.13 -1.14 6.91 -24.67 -0.17 -1.31 16 18 C -0.11 -1.03 6.26 -25.07 -0.16 -1.19 16 19 C -0.06 -0.61 3.13 -90.65 -0.28 -0.89 16 20 H 0.08 0.80 7.91 -51.93 -0.41 0.39 16 21 C -0.08 -0.91 3.30 -104.63 -0.35 -1.25 16 22 C -0.08 -0.87 6.50 -39.58 -0.26 -1.13 16 23 C -0.13 -1.40 10.05 -39.58 -0.40 -1.80 16 24 C -0.12 -1.33 10.05 -39.59 -0.40 -1.73 16 25 C -0.13 -1.39 10.05 -39.59 -0.40 -1.78 16 26 C -0.12 -1.36 9.68 -39.58 -0.38 -1.74 16 27 C -0.16 -3.25 5.31 -26.62 -0.14 -3.39 16 28 C 0.18 4.31 5.31 -3.71 -0.02 4.29 16 29 H 0.25 7.20 8.31 -40.82 -0.34 6.87 16 30 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 1.13 7.93 -51.93 -0.41 0.72 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.07 1.20 7.75 -51.93 -0.40 0.79 16 35 H 0.34 5.17 5.44 -39.29 -0.21 4.96 16 36 H 0.08 0.92 8.05 -51.93 -0.42 0.50 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.67 6.88 -51.93 -0.36 0.31 16 42 H 0.13 1.50 7.51 -52.49 -0.39 1.11 16 43 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 44 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 45 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 46 H 0.12 1.17 7.96 -52.48 -0.42 0.76 16 47 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 48 H 0.04 0.77 7.44 -51.93 -0.39 0.38 16 49 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.08 2.31 6.06 -51.93 -0.31 2.00 16 LS Contribution 378.00 15.07 5.70 5.70 Total: -1.00 -29.24 378.00 -12.24 -41.48 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -8.72 Total: 5.02 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: -3.86 Total: -17.32 kcal Atomic # 7 Polarization: -51.60 SS G_CDS: -0.32 Total: -51.92 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.03 Total: 17.05 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.24 -12.24 -41.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610812636.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.824 kcal (2) G-P(sol) polarization free energy of solvation -29.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds