Wall clock time and date at job start Tue Mar 31 2020 10:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99942 * 2 1 4 4 H 1.48494 * 109.47343 * 274.06937 * 3 2 1 5 5 H 1.48505 * 109.47215 * 34.06769 * 3 2 1 6 6 H 1.48496 * 109.47069 * 154.06642 * 3 2 1 7 7 C 1.38802 * 120.00077 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00452 * 197.50044 * 7 2 1 9 9 N 1.36945 * 120.00107 * 17.50663 * 7 2 1 10 10 C 1.46932 * 120.62744 * 207.96337 * 9 7 2 11 11 C 1.53194 * 108.77108 * 233.62316 * 10 9 7 12 12 C 1.53048 * 109.31166 * 305.36803 * 11 10 9 13 13 N 1.46904 * 109.45530 * 181.38688 * 12 11 10 14 14 C 1.46906 * 110.99516 * 155.00110 * 13 12 11 15 15 H 1.08992 * 110.01987 * 34.29690 * 14 13 12 16 16 C 1.54268 * 110.02779 * 272.90430 * 14 13 12 17 17 C 1.55020 * 104.13119 * 217.07060 * 16 14 13 18 18 C 1.54889 * 102.75584 * 37.95477 * 17 16 14 19 19 C 1.53872 * 110.02859 * 155.68795 * 14 13 12 20 20 H 1.08999 * 110.03652 * 238.61148 * 19 14 13 21 21 C 1.50700 * 110.03698 * 0.04601 * 19 14 13 22 22 C 1.38236 * 119.99794 * 59.72419 * 21 19 14 23 23 C 1.38233 * 119.99676 * 179.76767 * 22 21 19 24 24 C 1.38234 * 120.00233 * 0.48637 * 23 22 21 25 25 C 1.38230 * 119.99799 * 359.79127 * 24 23 22 26 26 C 1.38231 * 120.00110 * 240.00205 * 21 19 14 27 27 C 1.53035 * 109.53914 * 61.36297 * 12 11 10 28 28 C 1.46926 * 120.63021 * 27.97549 * 9 7 2 29 29 H 0.96996 * 119.99736 * 359.97438 * 1 2 3 30 30 H 1.09007 * 109.58412 * 113.84142 * 10 9 7 31 31 H 1.08994 * 109.58899 * 353.40984 * 10 9 7 32 32 H 1.08994 * 109.50127 * 185.41778 * 11 10 9 33 33 H 1.08996 * 109.49892 * 65.31703 * 11 10 9 34 34 H 1.09003 * 109.45999 * 301.35515 * 12 11 10 35 35 H 1.00900 * 110.99920 * 278.94778 * 13 12 11 36 36 H 1.08998 * 110.48781 * 335.72964 * 16 14 13 37 37 H 1.08991 * 110.48853 * 98.38561 * 16 14 13 38 38 H 1.09002 * 110.76202 * 279.62711 * 17 16 14 39 39 H 1.08998 * 110.89834 * 156.34003 * 17 16 14 40 40 H 1.09000 * 110.48035 * 203.36816 * 18 17 16 41 41 H 1.08998 * 110.60247 * 80.77782 * 18 17 16 42 42 H 1.07996 * 120.00112 * 0.02562 * 22 21 19 43 43 H 1.08006 * 119.99869 * 180.25275 * 23 22 21 44 44 H 1.08001 * 120.00306 * 179.76749 * 24 23 22 45 45 H 1.08006 * 119.99983 * 179.97438 * 25 24 23 46 46 H 1.08006 * 119.99901 * 359.97438 * 26 21 19 47 47 H 1.09001 * 109.49547 * 58.58799 * 27 12 11 48 48 H 1.09006 * 109.49965 * 178.67995 * 27 12 11 49 49 H 1.09003 * 109.58921 * 246.16401 * 28 9 7 50 50 H 1.08994 * 109.58619 * 6.58614 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4117 2.0961 -1.3965 5 1 1.4933 2.6264 0.7843 6 1 3.5881 1.4169 0.6123 7 6 2.0103 -1.2021 0.0005 8 1 3.0527 -1.2236 0.2818 9 7 1.3731 -2.3608 -0.3557 10 6 1.8152 -3.6542 0.1832 11 6 2.0771 -4.6111 -0.9841 12 6 0.8272 -4.6905 -1.8636 13 7 1.0634 -5.6328 -2.9656 14 6 -0.2019 -6.1907 -3.4615 15 1 -0.9909 -5.4415 -3.3966 16 6 -0.5880 -7.4375 -2.6391 17 6 -1.2145 -8.3991 -3.6812 18 6 -0.3291 -8.1722 -4.9317 19 6 -0.0369 -6.6575 -4.9184 20 1 -0.7459 -6.1349 -5.5606 21 6 1.3720 -6.3995 -5.3869 22 6 2.4372 -6.9861 -4.7296 23 6 3.7293 -6.7532 -5.1623 24 6 3.9567 -5.9259 -6.2460 25 6 2.8919 -5.3347 -6.8998 26 6 1.5994 -5.5717 -6.4704 27 6 0.5145 -3.3057 -2.4350 28 6 0.2348 -2.3341 -1.2843 29 1 -0.4849 0.8400 0.0004 30 1 1.0379 -4.0668 0.8266 31 1 2.7322 -3.5172 0.7562 32 1 2.3127 -5.6021 -0.5964 33 1 2.9153 -4.2426 -1.5755 34 1 -0.0164 -5.0353 -1.2656 35 1 1.5821 -5.1941 -3.7116 36 1 0.2972 -7.8867 -2.1889 37 1 -1.3173 -7.1776 -1.8720 38 1 -2.2496 -8.1258 -3.8859 39 1 -1.1491 -9.4336 -3.3442 40 1 -0.8697 -8.4485 -5.8369 41 1 0.5979 -8.7402 -4.8535 42 1 2.2597 -7.6295 -3.8806 43 1 4.5613 -7.2148 -4.6512 44 1 4.9664 -5.7410 -6.5818 45 1 3.0696 -4.6879 -7.7463 46 1 0.7674 -5.1102 -6.9814 47 1 1.3674 -2.9495 -3.0128 48 1 -0.3621 -3.3677 -3.0800 49 1 -0.6712 -2.6390 -0.7606 50 1 0.1091 -1.3261 -1.6794 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610812636.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:12 Heat of formation + Delta-G solvation = 26.104234 kcal Electronic energy + Delta-G solvation = -27311.633578 eV Core-core repulsion = 23916.709057 eV Total energy + Delta-G solvation = -3394.924520 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.22800 -39.42847 -38.29631 -35.81990 -33.65964 -32.68186 -31.70006 -31.53457 -30.94997 -28.43205 -27.76996 -26.09996 -23.81331 -23.58908 -23.03099 -23.00836 -21.44264 -20.76911 -20.10559 -18.76828 -17.73647 -17.08342 -16.72974 -16.44419 -15.95899 -15.67860 -15.38799 -15.35546 -15.29574 -15.00334 -14.77112 -14.37160 -14.16973 -14.01767 -13.95053 -13.55245 -13.15659 -13.02116 -12.77344 -12.62500 -12.48739 -12.37715 -12.18926 -12.02964 -11.99769 -11.93183 -11.83629 -11.76274 -11.64733 -11.51026 -11.33860 -11.31915 -11.10978 -10.58036 -9.68954 -9.41595 -9.20193 -8.69403 -7.89255 -5.34653 0.53991 0.64446 1.44344 1.45690 1.55197 2.49435 2.97395 3.21161 3.31469 3.65367 3.68123 3.80664 3.88064 3.99314 4.17397 4.20150 4.26274 4.34501 4.43118 4.44086 4.50722 4.54537 4.62769 4.64003 4.69230 4.70486 4.80347 4.84201 4.85827 4.92264 4.96277 5.01804 5.12302 5.15700 5.22469 5.24369 5.26088 5.30971 5.33322 5.36757 5.37411 5.48465 5.55602 5.62278 5.67747 5.69956 5.76141 5.86319 6.21078 6.28839 6.37210 6.56449 7.12764 7.84464 8.36633 9.16997 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.015085 B = 0.003797 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.752576 B = 7372.600956 C = 8277.691039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.050 4.050 3 Si 0.966 3.034 4 H -0.287 1.287 5 H -0.293 1.293 6 H -0.267 1.267 7 C -0.264 4.264 8 H 0.066 0.934 9 N -0.609 5.609 10 C 0.141 3.859 11 C -0.100 4.100 12 C 0.106 3.894 13 N -0.666 5.666 14 C 0.084 3.916 15 H 0.033 0.967 16 C -0.110 4.110 17 C -0.118 4.118 18 C -0.105 4.105 19 C -0.053 4.053 20 H 0.079 0.921 21 C -0.086 4.086 22 C -0.083 4.083 23 C -0.135 4.135 24 C -0.131 4.131 25 C -0.135 4.135 26 C -0.133 4.133 27 C -0.148 4.148 28 C 0.184 3.816 29 H 0.249 0.751 30 H 0.013 0.987 31 H 0.054 0.946 32 H 0.079 0.921 33 H 0.046 0.954 34 H 0.061 0.939 35 H 0.340 0.660 36 H 0.073 0.927 37 H 0.054 0.946 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.129 0.871 43 H 0.132 0.868 44 H 0.133 0.867 45 H 0.131 0.869 46 H 0.124 0.876 47 H 0.043 0.957 48 H 0.053 0.947 49 H -0.006 1.006 50 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.806 -18.645 -13.642 23.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.245 4.245 3 Si 0.794 3.206 4 H -0.214 1.214 5 H -0.220 1.220 6 H -0.191 1.191 7 C -0.394 4.394 8 H 0.083 0.917 9 N -0.333 5.333 10 C 0.015 3.985 11 C -0.139 4.139 12 C -0.005 4.005 13 N -0.298 5.298 14 C -0.026 4.026 15 H 0.051 0.949 16 C -0.149 4.149 17 C -0.155 4.155 18 C -0.143 4.143 19 C -0.072 4.072 20 H 0.098 0.902 21 C -0.087 4.087 22 C -0.102 4.102 23 C -0.153 4.153 24 C -0.149 4.149 25 C -0.153 4.153 26 C -0.151 4.151 27 C -0.188 4.188 28 C 0.058 3.942 29 H 0.059 0.941 30 H 0.031 0.969 31 H 0.072 0.928 32 H 0.098 0.902 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.163 0.837 36 H 0.092 0.908 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.147 0.853 43 H 0.150 0.850 44 H 0.151 0.849 45 H 0.149 0.851 46 H 0.142 0.858 47 H 0.062 0.938 48 H 0.072 0.928 49 H 0.012 0.988 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.855 -19.051 -13.208 23.255 hybrid contribution -0.270 2.316 -0.214 2.341 sum 1.585 -16.735 -13.422 21.511 Atomic orbital electron populations 1.70198 1.06715 1.25793 1.55489 1.25787 0.96020 1.01493 1.01249 0.85267 0.78324 0.79608 0.77377 1.21382 1.21994 1.19136 1.19547 0.93032 0.86226 1.40574 0.91655 1.44309 1.36369 1.02361 1.50259 1.21084 0.97169 0.85870 0.94378 1.21755 0.96838 0.98888 0.96457 1.21298 0.97372 0.88970 0.92811 1.61281 1.19061 1.37186 1.12314 1.22187 0.90525 0.96247 0.93618 0.94912 1.22424 1.00323 0.94713 0.97405 1.22473 0.98896 0.99579 0.94599 1.22392 1.00184 0.93125 0.98594 1.20987 0.93048 0.98238 0.94905 0.90237 1.19765 0.95293 0.97916 0.95708 1.21082 0.91867 0.98935 0.98283 1.21395 0.97430 0.99269 0.97180 1.21393 0.99632 0.97475 0.96374 1.21321 0.92739 1.00445 1.00830 1.21282 0.97560 0.98934 0.97320 1.22610 0.99769 0.97994 0.98456 1.20446 0.87848 0.97245 0.88705 0.94147 0.96901 0.92771 0.90246 0.93502 0.92034 0.83735 0.90795 0.92744 0.91221 0.90224 0.90647 0.91095 0.85336 0.85041 0.84917 0.85073 0.85806 0.93827 0.92817 0.98820 0.93292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.78 11.22 21.65 0.24 -56.54 16 2 C -0.05 -2.88 4.90 84.86 0.42 -2.46 16 3 Si 0.97 45.88 29.59 68.60 2.03 47.91 16 4 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 5 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 6 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 7 C -0.26 -14.98 9.58 84.03 0.81 -14.18 16 8 H 0.07 3.63 7.89 -2.91 -0.02 3.61 16 9 N -0.61 -31.77 2.99 -699.10 -2.09 -33.86 16 10 C 0.14 6.06 6.52 86.36 0.56 6.63 16 11 C -0.10 -3.52 5.69 30.67 0.17 -3.34 16 12 C 0.11 3.56 2.27 44.94 0.10 3.66 16 13 N -0.67 -18.11 4.34 -465.61 -2.02 -20.14 16 14 C 0.08 2.00 2.94 45.64 0.13 2.13 16 15 H 0.03 0.89 7.15 -2.39 -0.02 0.87 16 16 C -0.11 -2.29 6.37 31.72 0.20 -2.09 16 17 C -0.12 -1.86 6.91 31.93 0.22 -1.64 16 18 C -0.11 -1.70 6.26 31.67 0.20 -1.50 16 19 C -0.05 -1.05 3.13 -10.82 -0.03 -1.08 16 20 H 0.08 1.53 7.91 -2.39 -0.02 1.51 16 21 C -0.09 -1.84 3.30 -19.87 -0.07 -1.91 16 22 C -0.08 -1.78 6.50 22.27 0.14 -1.64 16 23 C -0.13 -2.75 10.05 22.27 0.22 -2.53 16 24 C -0.13 -2.60 10.05 22.27 0.22 -2.38 16 25 C -0.14 -2.75 10.05 22.27 0.22 -2.53 16 26 C -0.13 -2.82 9.68 22.27 0.22 -2.61 16 27 C -0.15 -5.85 5.31 30.67 0.16 -5.68 16 28 C 0.18 9.28 5.31 86.36 0.46 9.74 16 29 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 30 H 0.01 0.57 8.14 -2.38 -0.02 0.55 16 31 H 0.05 2.28 7.93 -2.39 -0.02 2.27 16 32 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.06 2.17 7.75 -2.39 -0.02 2.15 16 35 H 0.34 9.81 5.44 -89.69 -0.49 9.32 16 36 H 0.07 1.61 8.05 -2.39 -0.02 1.59 16 37 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.07 1.17 6.88 -2.39 -0.02 1.15 16 42 H 0.13 2.74 7.51 -2.91 -0.02 2.71 16 43 H 0.13 2.25 8.06 -2.91 -0.02 2.23 16 44 H 0.13 2.11 8.06 -2.91 -0.02 2.08 16 45 H 0.13 2.18 8.06 -2.91 -0.02 2.16 16 46 H 0.12 2.34 7.96 -2.91 -0.02 2.31 16 47 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 48 H 0.05 1.98 7.44 -2.38 -0.02 1.96 16 49 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 50 H 0.05 2.80 6.06 -2.39 -0.01 2.78 16 Total: -1.00 -63.33 378.00 2.94 -60.39 By element: Atomic # 1 Polarization: 25.23 SS G_CDS: 0.41 Total: 25.64 kcal Atomic # 6 Polarization: -27.78 SS G_CDS: 4.37 Total: -23.41 kcal Atomic # 7 Polarization: -106.66 SS G_CDS: -3.87 Total: -110.54 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -63.33 2.94 -60.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610812636.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.498 kcal (2) G-P(sol) polarization free energy of solvation -63.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds