Wall clock time and date at job start Tue Mar 31 2020 10:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 120.00215 * 2 1 4 4 H 1.48503 * 109.47221 * 274.06968 * 3 2 1 5 5 H 1.48497 * 109.46769 * 34.06831 * 3 2 1 6 6 H 1.48501 * 109.46860 * 154.06758 * 3 2 1 7 7 C 1.38814 * 119.99848 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00078 * 197.49969 * 7 2 1 9 9 N 1.36934 * 120.00424 * 17.49911 * 7 2 1 10 10 C 1.46919 * 120.63364 * 207.96386 * 9 7 2 11 11 C 1.53193 * 108.77653 * 233.62852 * 10 9 7 12 12 C 1.53048 * 109.31214 * 305.36475 * 11 10 9 13 13 N 1.46899 * 109.45997 * 181.38391 * 12 11 10 14 14 C 1.46900 * 111.00049 * 154.97569 * 13 12 11 15 15 H 1.09000 * 110.00969 * 325.06091 * 14 13 12 16 16 C 1.53873 * 110.03441 * 86.45022 * 14 13 12 17 17 C 1.54271 * 106.63648 * 119.30879 * 16 14 13 18 18 C 1.54960 * 104.16156 * 336.44605 * 17 16 14 19 19 C 1.54266 * 110.07266 * 203.64445 * 14 13 12 20 20 H 1.08999 * 110.48416 * 145.48955 * 19 14 13 21 21 C 1.50703 * 110.48466 * 22.97976 * 19 14 13 22 22 C 1.38230 * 120.00024 * 299.72420 * 21 19 14 23 23 C 1.38237 * 120.00124 * 179.76698 * 22 21 19 24 24 C 1.38236 * 119.99790 * 0.50975 * 23 22 21 25 25 C 1.38238 * 119.99980 * 359.74388 * 24 23 22 26 26 C 1.38232 * 119.99818 * 0.02562 * 25 24 23 27 27 C 1.53041 * 109.52532 * 61.37123 * 12 11 10 28 28 C 1.46932 * 120.62534 * 27.98365 * 9 7 2 29 29 H 0.97000 * 119.99629 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.59058 * 113.84381 * 10 9 7 31 31 H 1.08996 * 109.58852 * 353.41616 * 10 9 7 32 32 H 1.08999 * 109.49965 * 185.41530 * 11 10 9 33 33 H 1.08997 * 109.49923 * 65.31605 * 11 10 9 34 34 H 1.08994 * 109.46103 * 301.35544 * 12 11 10 35 35 H 1.00903 * 110.99896 * 278.92622 * 13 12 11 36 36 H 1.08993 * 110.03491 * 238.62224 * 16 14 13 37 37 H 1.09004 * 110.03258 * 0.02562 * 16 14 13 38 38 H 1.08999 * 110.47982 * 95.09717 * 17 16 14 39 39 H 1.09000 * 110.48161 * 217.73655 * 17 16 14 40 40 H 1.09000 * 110.72273 * 279.57408 * 18 17 16 41 41 H 1.09003 * 110.92413 * 156.29400 * 18 17 16 42 42 H 1.08007 * 120.00288 * 359.97438 * 22 21 19 43 43 H 1.08003 * 120.00064 * 180.22881 * 23 22 21 44 44 H 1.07997 * 120.00036 * 179.71928 * 24 23 22 45 45 H 1.07998 * 120.00162 * 179.97438 * 25 24 23 46 46 H 1.08004 * 120.00169 * 179.97438 * 26 25 24 47 47 H 1.09004 * 109.49858 * 58.58004 * 27 12 11 48 48 H 1.09000 * 109.49791 * 178.67320 * 27 12 11 49 49 H 1.09001 * 109.58447 * 246.15466 * 28 9 7 50 50 H 1.08999 * 109.58601 * 6.58398 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4117 2.0961 -1.3966 5 1 1.4934 2.6262 0.7843 6 1 3.5882 1.4167 0.6123 7 6 2.0102 -1.2022 -0.0005 8 1 3.0527 -1.2240 0.2807 9 7 1.3731 -2.3605 -0.3576 10 6 1.8151 -3.6544 0.1801 11 6 2.0770 -4.6103 -0.9880 12 6 0.8271 -4.6891 -1.8676 13 7 1.0632 -5.6304 -2.9704 14 6 -0.2020 -6.1883 -3.4664 15 1 -0.9021 -6.3164 -2.6409 16 6 -0.8072 -5.2570 -4.5313 17 6 -0.8995 -6.0774 -5.8345 18 6 0.1697 -7.1856 -5.6614 19 6 0.0522 -7.5431 -4.1589 20 1 -0.7847 -8.2207 -3.9902 21 6 1.3352 -8.1574 -3.6611 22 6 2.5330 -7.4885 -3.8303 23 6 3.7092 -8.0497 -3.3693 24 6 3.6889 -9.2847 -2.7486 25 6 2.4918 -9.9560 -2.5841 26 6 1.3150 -9.3926 -3.0408 27 6 0.5148 -3.3036 -2.4379 28 6 0.2348 -2.3330 -1.2862 29 1 -0.4849 0.8401 0.0004 30 1 1.0380 -4.0676 0.8231 31 1 2.7321 -3.5179 0.7532 32 1 2.3126 -5.6016 -0.6010 33 1 2.9152 -4.2413 -1.5791 34 1 -0.0164 -5.0343 -1.2699 35 1 1.5816 -5.1908 -3.7162 36 1 -1.8011 -4.9331 -4.2227 37 1 -0.1620 -4.3912 -4.6804 38 1 -1.8913 -6.5172 -5.9388 39 1 -0.6659 -5.4521 -6.6962 40 1 1.1637 -6.8017 -5.8906 41 1 -0.0617 -8.0503 -6.2834 42 1 2.5495 -6.5258 -4.3196 43 1 4.6446 -7.5254 -3.4983 44 1 4.6084 -9.7252 -2.3925 45 1 2.4760 -10.9211 -2.0995 46 1 0.3797 -9.9172 -2.9126 47 1 1.3678 -2.9471 -3.0152 48 1 -0.3617 -3.3649 -3.0831 49 1 -0.6712 -2.6384 -0.7628 50 1 0.1092 -1.3246 -1.6805 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610812637.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:16 Heat of formation + Delta-G solvation = 43.297112 kcal Electronic energy + Delta-G solvation = -27290.619766 eV Core-core repulsion = 23896.440784 eV Total energy + Delta-G solvation = -3394.178981 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.11069 -38.22762 -37.06195 -34.18108 -31.85123 -31.77654 -30.72130 -29.80145 -29.31938 -27.51518 -26.65774 -24.45242 -22.57957 -22.09800 -22.01863 -21.28122 -20.53905 -19.80110 -18.81262 -16.86772 -16.74441 -15.94888 -15.67971 -14.80359 -14.68558 -14.37904 -14.23420 -13.99690 -13.55757 -13.47641 -13.36397 -13.19382 -12.96095 -12.85087 -12.45889 -12.30432 -12.07884 -11.59440 -11.42974 -11.37048 -11.06842 -11.03715 -10.87556 -10.78066 -10.70190 -10.64117 -10.58330 -10.45283 -10.32923 -10.10645 -9.98175 -9.59667 -9.40684 -8.72924 -8.47196 -8.41840 -7.85885 -6.63432 -5.76596 -3.18231 1.57297 1.65354 3.38298 3.45493 3.46985 3.95883 4.32757 4.51729 4.60004 4.67587 4.78570 5.05956 5.12587 5.17353 5.30318 5.36058 5.39800 5.43485 5.46608 5.50892 5.53168 5.61942 5.67400 5.73900 5.75764 5.81752 5.85773 5.90889 6.00008 6.06900 6.14038 6.18939 6.21330 6.26365 6.27932 6.39036 6.56373 6.60788 6.65131 6.68030 6.71782 6.75607 6.88363 6.89485 7.06180 7.21268 7.36801 7.47761 7.63427 7.71926 7.82226 8.47908 9.24298 9.88318 10.45432 11.31792 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.017424 B = 0.003591 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.622297 B = 7795.622923 C = 8786.105106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.001 3.999 3 Si 0.901 3.099 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.250 4.250 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.145 3.855 11 C -0.114 4.114 12 C 0.096 3.904 13 N -0.671 5.671 14 C 0.092 3.908 15 H 0.078 0.922 16 C -0.155 4.155 17 C -0.123 4.123 18 C -0.117 4.117 19 C -0.048 4.048 20 H 0.079 0.921 21 C -0.048 4.048 22 C -0.062 4.062 23 C -0.128 4.128 24 C -0.128 4.128 25 C -0.130 4.130 26 C -0.124 4.124 27 C -0.169 4.169 28 C 0.176 3.824 29 H 0.253 0.747 30 H 0.015 0.985 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.336 0.664 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.118 0.882 43 H 0.114 0.886 44 H 0.112 0.888 45 H 0.112 0.888 46 H 0.111 0.889 47 H 0.053 0.947 48 H 0.049 0.951 49 H 0.015 0.985 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.675 -17.969 -11.188 21.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.380 4.380 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.018 3.982 11 C -0.154 4.154 12 C -0.013 4.013 13 N -0.300 5.300 14 C -0.019 4.019 15 H 0.096 0.904 16 C -0.195 4.195 17 C -0.161 4.161 18 C -0.154 4.154 19 C -0.067 4.067 20 H 0.097 0.903 21 C -0.049 4.049 22 C -0.080 4.080 23 C -0.147 4.147 24 C -0.146 4.146 25 C -0.149 4.149 26 C -0.142 4.142 27 C -0.210 4.210 28 C 0.049 3.951 29 H 0.063 0.937 30 H 0.033 0.967 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.155 0.845 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.136 0.864 43 H 0.132 0.868 44 H 0.130 0.870 45 H 0.130 0.870 46 H 0.130 0.870 47 H 0.071 0.929 48 H 0.068 0.932 49 H 0.033 0.967 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.706 -18.343 -10.727 21.261 hybrid contribution -0.054 1.745 -0.331 1.777 sum 0.652 -16.598 -11.058 19.955 Atomic orbital electron populations 1.70046 1.05258 1.25349 1.54185 1.25026 0.95249 0.98355 1.01077 0.86294 0.79224 0.83850 0.77553 1.21570 1.21812 1.20379 1.19222 0.92747 0.84996 1.41007 0.91728 1.44061 1.36340 1.01475 1.49619 1.20922 0.97435 0.86801 0.93036 1.21939 0.96813 0.98827 0.97839 1.21550 0.98047 0.89953 0.91731 1.61169 1.18036 1.38362 1.12481 1.22152 0.91132 0.92694 0.95954 0.90403 1.23077 1.01939 0.98853 0.95592 1.22346 0.98972 0.97182 0.97621 1.22626 0.99421 0.98166 0.95204 1.21081 0.95007 0.96005 0.94613 0.90289 1.19421 0.94255 0.93456 0.97722 1.20850 0.91389 0.97764 0.98046 1.21089 0.98196 0.95705 0.99669 1.21010 0.97586 0.95762 1.00254 1.20956 0.92890 0.99877 1.01137 1.20957 0.97733 0.95733 0.99769 1.22968 1.00018 0.97515 1.00492 1.20677 0.88654 0.98054 0.87717 0.93750 0.96742 0.92893 0.92756 0.92738 0.91603 0.84463 0.91642 0.90964 0.91817 0.91835 0.91188 0.91739 0.86407 0.86782 0.87013 0.86992 0.87049 0.92869 0.93223 0.96730 0.89793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.46 11.22 55.49 0.62 -25.83 16 2 C 0.00 0.04 4.90 -17.43 -0.09 -0.05 16 3 Si 0.90 21.88 29.59 -169.99 -5.03 16.85 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.25 -6.94 9.58 -15.06 -0.14 -7.09 16 8 H 0.07 1.77 7.89 -52.49 -0.41 1.36 16 9 N -0.59 -14.95 2.99 -172.32 -0.52 -15.47 16 10 C 0.14 3.11 6.52 -3.71 -0.02 3.09 16 11 C -0.11 -2.05 5.69 -26.61 -0.15 -2.20 16 12 C 0.10 1.59 2.43 -67.67 -0.16 1.42 16 13 N -0.67 -8.91 3.22 -98.53 -0.32 -9.22 16 14 C 0.09 1.08 3.09 -66.60 -0.21 0.88 16 15 H 0.08 1.01 7.46 -51.93 -0.39 0.62 16 16 C -0.16 -1.72 5.13 -25.61 -0.13 -1.85 16 17 C -0.12 -1.14 6.84 -25.03 -0.17 -1.31 16 18 C -0.12 -1.07 6.26 -24.70 -0.15 -1.23 16 19 C -0.05 -0.50 3.08 -90.11 -0.28 -0.78 16 20 H 0.08 0.77 7.94 -51.93 -0.41 0.36 16 21 C -0.05 -0.56 4.66 -104.62 -0.49 -1.05 16 22 C -0.06 -0.73 7.14 -39.58 -0.28 -1.01 16 23 C -0.13 -1.50 10.05 -39.58 -0.40 -1.90 16 24 C -0.13 -1.44 10.05 -39.58 -0.40 -1.84 16 25 C -0.13 -1.45 10.05 -39.58 -0.40 -1.84 16 26 C -0.12 -1.41 9.68 -39.58 -0.38 -1.79 16 27 C -0.17 -3.13 4.75 -26.61 -0.13 -3.25 16 28 C 0.18 4.18 5.31 -3.71 -0.02 4.16 16 29 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 1.13 7.93 -51.93 -0.41 0.71 16 32 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.07 1.17 7.44 -51.93 -0.39 0.78 16 35 H 0.34 4.37 6.28 -39.29 -0.25 4.12 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.88 6.07 -51.93 -0.32 0.56 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.67 6.79 -51.93 -0.35 0.31 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.12 1.34 5.35 -52.48 -0.28 1.06 16 43 H 0.11 1.18 8.06 -52.48 -0.42 0.76 16 44 H 0.11 1.05 8.06 -52.49 -0.42 0.63 16 45 H 0.11 1.02 8.06 -52.49 -0.42 0.60 16 46 H 0.11 1.09 7.97 -52.48 -0.42 0.67 16 47 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 48 H 0.05 0.84 5.80 -51.93 -0.30 0.53 16 49 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.08 2.26 6.06 -51.93 -0.31 1.94 16 LS Contribution 372.28 15.07 5.61 5.61 Total: -1.00 -29.09 372.28 -12.08 -41.17 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -8.45 Total: 4.52 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: -4.00 Total: -17.63 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: -0.21 Total: -50.52 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.09 -12.08 -41.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610812637.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.472 kcal (2) G-P(sol) polarization free energy of solvation -29.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds