Wall clock time and date at job start Tue Mar 31 2020 10:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 120.00105 * 2 1 4 4 H 1.48509 * 109.47175 * 269.99923 * 3 2 1 5 5 H 1.48500 * 109.46896 * 29.99707 * 3 2 1 6 6 H 1.48497 * 109.47495 * 150.00181 * 3 2 1 7 7 C 1.38813 * 119.99915 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00080 * 164.34863 * 7 2 1 9 9 N 1.36932 * 119.99990 * 344.34718 * 7 2 1 10 10 C 1.46935 * 120.63080 * 327.44282 * 9 7 2 11 11 C 1.53195 * 108.89158 * 233.51705 * 10 9 7 12 12 C 1.53067 * 109.29636 * 305.57758 * 11 10 9 13 13 N 1.46901 * 109.45225 * 181.24589 * 12 11 10 14 14 C 1.46891 * 111.00243 * 82.25995 * 13 12 11 15 15 H 1.09001 * 109.47343 * 319.75229 * 14 13 12 16 16 C 1.53000 * 109.47772 * 199.74860 * 14 13 12 17 17 C 1.50706 * 109.46869 * 64.99926 * 16 14 13 18 18 C 1.38234 * 120.00064 * 269.73500 * 17 16 14 19 19 C 1.38238 * 119.99632 * 179.76543 * 18 17 16 20 20 C 1.38236 * 120.00070 * 0.50595 * 19 18 17 21 21 C 1.38236 * 119.99851 * 359.74019 * 20 19 18 22 22 C 1.38230 * 120.00153 * 0.02562 * 21 20 19 23 23 C 1.53011 * 109.47125 * 79.75030 * 14 13 12 24 24 C 1.53001 * 117.49618 * 253.10623 * 23 14 13 25 25 C 1.52993 * 117.50006 * 184.44322 * 23 14 13 26 26 C 1.53045 * 109.65725 * 61.15819 * 12 11 10 27 27 C 1.46929 * 120.63273 * 147.42918 * 9 7 2 28 28 H 0.96995 * 120.00020 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.58523 * 353.37553 * 10 9 7 30 30 H 1.08998 * 109.58033 * 113.66290 * 10 9 7 31 31 H 1.09004 * 109.49479 * 65.39160 * 11 10 9 32 32 H 1.09002 * 109.49319 * 185.48478 * 11 10 9 33 33 H 1.09002 * 109.33886 * 301.13835 * 12 11 10 34 34 H 1.00899 * 111.00011 * 318.30822 * 13 12 11 35 35 H 1.08992 * 109.47651 * 184.99957 * 16 14 13 36 36 H 1.09000 * 109.46973 * 305.00745 * 16 14 13 37 37 H 1.07996 * 120.00247 * 359.97438 * 18 17 16 38 38 H 1.08000 * 119.99686 * 180.22681 * 19 18 17 39 39 H 1.08000 * 119.99729 * 179.72800 * 20 19 18 40 40 H 1.07997 * 119.99700 * 179.97438 * 21 20 19 41 41 H 1.07997 * 120.00066 * 179.97438 * 22 21 20 42 42 H 1.08998 * 115.54573 * 38.77334 * 23 14 13 43 43 H 1.09001 * 117.50135 * 359.97438 * 24 23 14 44 44 H 1.08997 * 117.49749 * 145.02334 * 24 23 14 45 45 H 1.08998 * 117.49894 * 214.97848 * 25 23 14 46 46 H 1.08999 * 117.50049 * 359.97438 * 25 23 14 47 47 H 1.09009 * 109.49228 * 178.74609 * 26 12 11 48 48 H 1.08990 * 109.49887 * 58.64932 * 26 12 11 49 49 H 1.09000 * 109.58161 * 246.19955 * 27 9 7 50 50 H 1.09002 * 109.58154 * 6.47554 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0602 -1.2194 -0.2529 9 7 1.3637 -2.3662 0.3189 10 6 0.2634 -2.3684 1.2927 11 6 0.5637 -3.4071 2.3781 12 6 0.8278 -4.7638 1.7205 13 7 1.0869 -5.7691 2.7599 14 6 -0.1700 -6.2854 3.3179 15 1 -0.8788 -5.4659 3.4363 16 6 0.1017 -6.9256 4.6807 17 6 0.5630 -5.8675 5.6496 18 6 1.9107 -5.5873 5.7771 19 6 2.3334 -4.6133 6.6623 20 6 1.4093 -3.9270 7.4278 21 6 0.0621 -4.2108 7.3040 22 6 -0.3610 -5.1813 6.4152 23 6 -0.7563 -7.3337 2.3699 24 6 -1.9898 -6.9385 1.5556 25 6 -2.1249 -7.9191 2.7233 26 6 2.0438 -4.6604 0.7969 27 6 1.7567 -3.6366 -0.3058 28 1 -0.4850 0.8400 -0.0004 29 1 0.1748 -1.3812 1.7462 30 1 -0.6690 -2.6246 0.7898 31 1 1.4450 -3.1001 2.9414 32 1 -0.2896 -3.4866 3.0515 33 1 -0.0456 -5.0594 1.1392 34 1 1.6778 -5.3938 3.4866 35 1 -0.8125 -7.3866 5.0544 36 1 0.8760 -7.6857 4.5771 37 1 2.6330 -6.1269 5.1826 38 1 3.3860 -4.3918 6.7592 39 1 1.7400 -3.1691 8.1226 40 1 -0.6598 -3.6748 7.9023 41 1 -1.4135 -5.4033 6.3189 42 1 -0.0321 -7.9969 1.8968 43 1 -2.3840 -5.9320 1.6955 44 1 -2.0775 -7.3422 0.5469 45 1 -2.3013 -8.9673 2.4823 46 1 -2.6075 -7.5578 3.6314 47 1 2.2429 -5.6333 0.3474 48 1 2.9120 -4.3407 1.3730 49 1 0.9464 -3.9986 -0.9386 50 1 2.6519 -3.4855 -0.9092 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610812899.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:03 Heat of formation + Delta-G solvation = 44.523191 kcal Electronic energy + Delta-G solvation = -27102.079553 eV Core-core repulsion = 23707.953739 eV Total energy + Delta-G solvation = -3394.125815 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.75342 -39.57282 -38.45584 -36.11867 -34.57309 -33.16733 -31.77284 -31.56935 -30.97158 -28.75956 -26.42747 -24.89126 -23.81713 -23.54787 -23.23621 -22.99878 -21.95492 -20.82713 -20.60469 -18.76534 -17.62446 -17.10755 -16.86852 -16.36939 -16.24133 -15.93437 -15.62502 -15.37403 -15.11257 -15.00692 -14.77593 -14.42263 -14.23673 -13.99043 -13.86405 -13.72902 -13.26567 -13.05108 -12.73479 -12.68023 -12.59366 -12.52509 -12.40113 -12.28295 -12.13067 -11.99050 -11.86468 -11.79581 -11.64796 -11.40040 -11.26901 -11.00789 -10.82976 -10.58345 -9.80820 -9.55940 -9.26726 -8.63416 -7.89609 -5.39690 0.46345 0.51629 1.44144 1.45278 1.55458 2.49149 2.85113 2.93142 3.21944 3.30394 3.67744 3.71694 3.96586 4.00678 4.04055 4.10428 4.18677 4.19972 4.21692 4.31112 4.35673 4.45211 4.53366 4.56942 4.57694 4.65636 4.68897 4.71874 4.82747 4.83893 4.85796 4.95229 5.05382 5.07823 5.13400 5.19782 5.21177 5.25154 5.28703 5.30533 5.35410 5.42468 5.46156 5.59750 5.63258 5.65233 5.65783 5.73022 6.14449 6.21181 6.39362 6.54837 7.13532 7.83492 8.38789 9.16634 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.011345 B = 0.004309 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2467.495104 B = 6496.051652 C = 7969.412112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.046 4.046 3 Si 0.966 3.034 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.270 1.270 7 C -0.268 4.268 8 H 0.063 0.937 9 N -0.607 5.607 10 C 0.190 3.810 11 C -0.145 4.145 12 C 0.110 3.890 13 N -0.673 5.673 14 C 0.126 3.874 15 H 0.025 0.975 16 C -0.070 4.070 17 C -0.093 4.093 18 C -0.129 4.129 19 C -0.127 4.127 20 C -0.137 4.137 21 C -0.129 4.129 22 C -0.130 4.130 23 C -0.138 4.138 24 C -0.197 4.197 25 C -0.159 4.159 26 C -0.104 4.104 27 C 0.141 3.859 28 H 0.250 0.750 29 H 0.040 0.960 30 H -0.007 1.007 31 H 0.044 0.956 32 H 0.049 0.951 33 H 0.065 0.935 34 H 0.341 0.659 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.132 0.868 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.130 0.870 42 H 0.109 0.891 43 H 0.075 0.925 44 H 0.095 0.905 45 H 0.110 0.890 46 H 0.098 0.902 47 H 0.080 0.920 48 H 0.050 0.950 49 H 0.011 0.989 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.674 -16.622 13.597 21.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.242 4.242 3 Si 0.793 3.207 4 H -0.208 1.208 5 H -0.218 1.218 6 H -0.194 1.194 7 C -0.398 4.398 8 H 0.081 0.919 9 N -0.331 5.331 10 C 0.063 3.937 11 C -0.186 4.186 12 C 0.000 4.000 13 N -0.305 5.305 14 C 0.016 3.984 15 H 0.043 0.957 16 C -0.107 4.107 17 C -0.093 4.093 18 C -0.147 4.147 19 C -0.145 4.145 20 C -0.155 4.155 21 C -0.147 4.147 22 C -0.148 4.148 23 C -0.157 4.157 24 C -0.234 4.234 25 C -0.196 4.196 26 C -0.143 4.143 27 C 0.016 3.984 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.011 0.989 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.162 0.838 35 H 0.111 0.889 36 H 0.106 0.894 37 H 0.150 0.850 38 H 0.152 0.848 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.147 0.853 42 H 0.127 0.873 43 H 0.093 0.907 44 H 0.113 0.887 45 H 0.128 0.872 46 H 0.117 0.883 47 H 0.098 0.902 48 H 0.069 0.931 49 H 0.029 0.971 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.687 -17.027 13.150 21.525 hybrid contribution -0.221 2.277 0.234 2.299 sum -0.907 -14.750 13.384 19.938 Atomic orbital electron populations 1.70185 1.06841 1.25912 1.55084 1.25920 0.96003 1.01678 1.00580 0.85312 0.78140 0.79452 0.77776 1.20776 1.21837 1.19440 1.19465 0.92292 0.85868 1.42156 0.91887 1.44231 1.39400 1.03610 1.45879 1.20337 0.88474 0.96230 0.88624 1.22578 0.99682 0.98018 0.98286 1.21235 0.97814 0.88098 0.92815 1.60754 1.15890 1.37888 1.15956 1.20961 0.90512 0.94488 0.92391 0.95678 1.20691 1.03160 0.95847 0.91028 1.20093 0.93657 0.98143 0.97400 1.21304 0.95653 0.98738 0.99021 1.21442 1.00584 0.96213 0.96307 1.21437 0.93556 1.00236 1.00235 1.21417 0.96457 0.97869 0.98943 1.21284 0.99927 0.96902 0.96729 1.22219 0.90790 1.01059 1.01600 1.23005 1.03284 0.99939 0.97156 1.23013 0.98502 0.99174 0.98932 1.21794 0.97063 0.98673 0.96776 1.21074 0.97337 0.86140 0.93896 0.94112 0.94153 0.98919 0.93728 0.93285 0.91684 0.83822 0.88928 0.89379 0.84991 0.84770 0.84784 0.84760 0.85253 0.87275 0.90671 0.88699 0.87204 0.88328 0.90183 0.93137 0.97123 0.92679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.93 11.46 21.65 0.25 -56.68 16 2 C -0.05 -2.64 4.91 84.86 0.42 -2.22 16 3 Si 0.97 45.73 29.58 68.60 2.03 47.76 16 4 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 5 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 6 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 7 C -0.27 -15.21 9.54 84.03 0.80 -14.41 16 8 H 0.06 3.49 7.88 -2.91 -0.02 3.47 16 9 N -0.61 -31.75 2.97 -699.08 -2.08 -33.83 16 10 C 0.19 9.62 5.26 86.36 0.45 10.07 16 11 C -0.14 -5.78 5.33 30.68 0.16 -5.62 16 12 C 0.11 3.76 2.26 44.95 0.10 3.86 16 13 N -0.67 -18.38 6.03 -469.27 -2.83 -21.21 16 14 C 0.13 2.98 2.08 44.92 0.09 3.07 16 15 H 0.03 0.71 6.73 -2.39 -0.02 0.69 16 16 C -0.07 -1.33 4.95 29.85 0.15 -1.18 16 17 C -0.09 -2.00 4.80 -19.86 -0.10 -2.09 16 18 C -0.13 -2.80 8.01 22.27 0.18 -2.62 16 19 C -0.13 -2.72 10.05 22.27 0.22 -2.50 16 20 C -0.14 -2.87 10.05 22.27 0.22 -2.65 16 21 C -0.13 -2.71 10.05 22.27 0.22 -2.48 16 22 C -0.13 -2.80 9.70 22.27 0.22 -2.58 16 23 C -0.14 -2.97 4.88 -10.79 -0.05 -3.02 16 24 C -0.20 -4.45 9.59 30.62 0.29 -4.16 16 25 C -0.16 -2.75 9.73 30.62 0.30 -2.45 16 26 C -0.10 -3.66 5.69 30.67 0.17 -3.48 16 27 C 0.14 6.13 6.52 86.36 0.56 6.70 16 28 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 29 H 0.04 2.30 6.37 -2.39 -0.02 2.29 16 30 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 31 H 0.04 1.85 8.14 -2.38 -0.02 1.83 16 32 H 0.05 1.87 7.17 -2.39 -0.02 1.85 16 33 H 0.06 2.35 6.92 -2.39 -0.02 2.33 16 34 H 0.34 9.33 5.47 -89.69 -0.49 8.84 16 35 H 0.09 1.48 7.38 -2.39 -0.02 1.46 16 36 H 0.09 1.58 8.08 -2.39 -0.02 1.56 16 37 H 0.13 2.58 7.67 -2.91 -0.02 2.56 16 38 H 0.13 2.38 8.06 -2.91 -0.02 2.36 16 39 H 0.13 2.28 8.06 -2.91 -0.02 2.26 16 40 H 0.13 2.28 8.06 -2.91 -0.02 2.26 16 41 H 0.13 2.37 8.06 -2.91 -0.02 2.35 16 42 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 43 H 0.07 1.96 8.08 -2.39 -0.02 1.94 16 44 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 46 H 0.10 1.56 7.87 -2.39 -0.02 1.54 16 47 H 0.08 2.47 8.14 -2.38 -0.02 2.45 16 48 H 0.05 1.83 8.14 -2.39 -0.02 1.82 16 49 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 50 H 0.05 2.33 7.93 -2.39 -0.02 2.32 16 Total: -1.00 -64.83 387.98 2.20 -62.63 By element: Atomic # 1 Polarization: 28.70 SS G_CDS: 0.41 Total: 29.10 kcal Atomic # 6 Polarization: -32.20 SS G_CDS: 4.43 Total: -27.78 kcal Atomic # 7 Polarization: -107.06 SS G_CDS: -4.66 Total: -111.72 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -64.83 2.20 -62.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610812899.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.151 kcal (2) G-P(sol) polarization free energy of solvation -64.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds