Wall clock time and date at job start Tue Mar 31 2020 11:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 110.26897 * 2 1 4 4 C 1.54342 * 110.30078 * 122.07310 * 2 1 3 5 5 C 1.54350 * 102.39321 * 92.57720 * 4 2 1 6 6 H 1.09001 * 110.30418 * 145.27061 * 5 4 2 7 7 N 1.46905 * 110.30098 * 267.32474 * 5 4 2 8 8 C 1.46897 * 110.99921 * 271.77936 * 7 5 4 9 9 C 1.53042 * 109.46079 * 273.07136 * 8 7 5 10 10 C 1.53201 * 109.31166 * 178.60089 * 9 8 7 11 11 N 1.46925 * 108.76338 * 54.65665 * 10 9 8 12 12 C 1.36938 * 120.63392 * 126.40685 * 11 10 9 13 13 H 1.08000 * 119.99413 * 331.38094 * 12 11 10 14 14 C 1.38811 * 120.00047 * 151.37960 * 12 11 10 15 15 N 1.31610 * 120.00149 * 345.23479 * 14 12 11 16 16 Si 1.86801 * 119.99589 * 165.23369 * 14 12 11 17 17 H 1.48492 * 109.47342 * 90.00063 * 16 14 12 18 18 H 1.48502 * 109.46689 * 210.00215 * 16 14 12 19 19 H 1.48503 * 109.47108 * 329.99972 * 16 14 12 20 20 C 1.46933 * 118.73925 * 306.37887 * 11 10 9 21 21 C 1.53040 * 109.46049 * 153.01575 * 8 7 5 22 22 C 1.51371 * 105.17053 * 26.34531 * 5 4 2 23 23 C 1.38495 * 130.39601 * 162.81482 * 22 5 4 24 24 C 1.38098 * 120.21971 * 179.97438 * 23 22 5 25 25 C 1.38257 * 119.93069 * 359.97438 * 24 23 22 26 26 C 1.38097 * 119.93891 * 0.02562 * 25 24 23 27 27 C 1.38306 * 120.28040 * 0.02562 * 26 25 24 28 28 H 1.09003 * 109.46943 * 59.30320 * 1 2 3 29 29 H 1.08999 * 109.47080 * 179.30023 * 1 2 3 30 30 H 1.08993 * 109.46721 * 299.30059 * 1 2 3 31 31 H 1.08994 * 109.47418 * 60.69574 * 3 2 1 32 32 H 1.08998 * 109.47378 * 180.70321 * 3 2 1 33 33 H 1.09004 * 109.46529 * 300.69778 * 3 2 1 34 34 H 1.09003 * 110.82293 * 210.79804 * 4 2 1 35 35 H 1.09002 * 110.82510 * 334.15281 * 4 2 1 36 36 H 1.00896 * 110.99856 * 35.73393 * 7 5 4 37 37 H 1.09009 * 109.45961 * 33.04284 * 8 7 5 38 38 H 1.08997 * 109.49705 * 298.56327 * 9 8 7 39 39 H 1.08996 * 109.49886 * 58.66275 * 9 8 7 40 40 H 1.08997 * 109.59495 * 294.86664 * 10 9 8 41 41 H 1.09000 * 109.70232 * 174.50112 * 10 9 8 42 42 H 0.97007 * 119.99983 * 179.97438 * 15 14 12 43 43 H 1.09000 * 109.58532 * 293.82781 * 20 11 10 44 44 H 1.08992 * 109.70340 * 173.46628 * 20 11 10 45 45 H 1.09003 * 109.49554 * 301.33383 * 21 8 7 46 46 H 1.08994 * 109.49750 * 61.43274 * 21 8 7 47 47 H 1.08003 * 119.88722 * 0.02562 * 23 22 5 48 48 H 1.07994 * 120.03272 * 179.97438 * 24 23 22 49 49 H 1.08006 * 120.02814 * 179.97438 * 25 24 23 50 50 H 1.08000 * 119.89841 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0601 1.4352 0.0000 4 6 2.0656 -0.7687 1.2266 5 6 2.2441 -2.1973 0.6703 6 1 3.1106 -2.6755 1.1270 7 7 1.0347 -2.9945 0.9153 8 6 1.0947 -3.6522 2.2275 9 6 1.8178 -4.9942 2.0926 10 6 1.9092 -5.6610 3.4688 11 7 0.5580 -5.7584 4.0375 12 6 0.0698 -6.9609 4.4743 13 1 0.4155 -7.8796 4.0240 14 6 -0.8694 -6.9989 5.4957 15 7 -1.0777 -5.9325 6.2383 16 14 -1.8378 -8.5639 5.8162 17 1 -1.1055 -9.4076 6.7945 18 1 -3.1733 -8.2160 6.3645 19 1 -2.0044 -9.3121 4.5443 20 6 -0.2593 -4.5408 4.1293 21 6 -0.3261 -3.8864 2.7458 22 6 2.4655 -2.0186 -0.8165 23 6 2.9849 -2.8916 -1.7578 24 6 3.0935 -2.5049 -3.0791 25 6 2.6822 -1.2425 -3.4645 26 6 2.1641 -0.3705 -2.5273 27 6 2.0548 -0.7541 -1.2030 28 1 -0.3633 0.5246 -0.8837 29 1 -0.3633 -1.0276 -0.0126 30 1 -0.3632 0.5029 0.8962 31 1 1.7142 1.9503 0.8961 32 1 3.1499 1.4201 -0.0126 33 1 1.6937 1.9577 -0.8837 34 1 3.0208 -0.3584 1.5543 35 1 1.3401 -0.7542 2.0400 36 1 0.2046 -2.4269 0.8329 37 1 1.6366 -3.0165 2.9279 38 1 1.2629 -5.6396 1.4116 39 1 2.8215 -4.8290 1.7012 40 1 2.5395 -5.0606 4.1248 41 1 2.3351 -6.6591 3.3660 42 1 -1.7343 -5.9590 6.9519 43 1 0.1942 -3.8490 4.8392 44 1 -1.2652 -4.7976 4.4610 45 1 -0.8483 -2.9325 2.8194 46 1 -0.8605 -4.5423 2.0586 47 1 3.3053 -3.8784 -1.4577 48 1 3.4993 -3.1880 -3.8106 49 1 2.7668 -0.9382 -4.4973 50 1 1.8433 0.6157 -2.8290 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610813449.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:56 Heat of formation + Delta-G solvation = 38.359236 kcal Electronic energy + Delta-G solvation = -26989.234771 eV Core-core repulsion = 23594.841667 eV Total energy + Delta-G solvation = -3394.393104 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.80393 -37.96274 -36.68148 -34.73334 -32.60205 -31.18008 -30.09816 -29.84908 -29.13214 -27.77057 -27.35952 -24.70919 -23.58724 -22.74188 -22.15288 -21.35276 -20.46622 -19.38146 -19.00206 -16.85807 -16.31194 -15.75898 -15.22529 -15.10807 -14.78583 -14.54930 -14.10087 -13.88643 -13.77060 -13.56139 -13.44961 -13.15973 -13.03099 -12.74099 -12.46163 -12.35361 -12.23518 -12.09413 -11.89622 -11.55964 -11.36946 -11.23993 -11.11838 -10.89697 -10.83299 -10.67416 -10.57551 -10.40799 -10.30055 -10.16703 -9.89602 -9.56783 -9.44794 -8.82675 -8.60980 -8.44771 -8.10168 -6.62306 -5.75688 -3.18926 1.32793 1.39582 3.39279 3.46039 3.48920 3.70543 4.26675 4.32316 4.49979 4.52407 4.80694 4.89874 4.93644 5.01544 5.10633 5.14079 5.38646 5.39962 5.44238 5.47635 5.47765 5.52980 5.57606 5.62848 5.70829 5.75407 5.79999 5.80821 5.90278 5.95745 6.00221 6.01179 6.12947 6.17428 6.20641 6.38001 6.45296 6.49790 6.54105 6.59710 6.66646 6.68741 6.72122 6.86522 6.97896 7.08679 7.41018 7.41209 7.67593 7.71606 7.82518 8.49265 9.25191 9.88417 10.45460 11.32806 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.023141 B = 0.003065 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.693308 B = 9131.948624 C = 9752.857956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.024 4.024 3 C -0.137 4.137 4 C -0.144 4.144 5 C 0.125 3.875 6 H 0.086 0.914 7 N -0.676 5.676 8 C 0.097 3.903 9 C -0.116 4.116 10 C 0.145 3.855 11 N -0.592 5.592 12 C -0.249 4.249 13 H 0.065 0.935 14 C 0.001 3.999 15 N -0.906 5.906 16 Si 0.903 3.097 17 H -0.287 1.287 18 H -0.290 1.290 19 H -0.279 1.279 20 C 0.175 3.825 21 C -0.142 4.142 22 C -0.072 4.072 23 C -0.090 4.090 24 C -0.125 4.125 25 C -0.123 4.123 26 C -0.109 4.109 27 C -0.083 4.083 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.338 0.662 37 H 0.037 0.963 38 H 0.063 0.937 39 H 0.045 0.955 40 H 0.014 0.986 41 H 0.053 0.947 42 H 0.253 0.747 43 H 0.015 0.985 44 H 0.090 0.910 45 H 0.043 0.957 46 H 0.062 0.938 47 H 0.120 0.880 48 H 0.120 0.880 49 H 0.119 0.881 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.903 14.269 -16.080 22.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.024 4.024 3 C -0.194 4.194 4 C -0.183 4.183 5 C 0.015 3.985 6 H 0.104 0.896 7 N -0.308 5.308 8 C -0.012 4.012 9 C -0.156 4.156 10 C 0.018 3.982 11 N -0.315 5.315 12 C -0.379 4.379 13 H 0.082 0.918 14 C -0.198 4.198 15 N -0.551 5.551 16 Si 0.732 3.268 17 H -0.214 1.214 18 H -0.216 1.216 19 H -0.205 1.205 20 C 0.048 3.952 21 C -0.182 4.182 22 C -0.073 4.073 23 C -0.108 4.108 24 C -0.143 4.143 25 C -0.141 4.141 26 C -0.127 4.127 27 C -0.083 4.083 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.159 0.841 37 H 0.055 0.945 38 H 0.082 0.918 39 H 0.063 0.937 40 H 0.032 0.968 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.033 0.967 44 H 0.108 0.892 45 H 0.062 0.938 46 H 0.081 0.919 47 H 0.138 0.862 48 H 0.138 0.862 49 H 0.137 0.863 50 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 6.997 13.708 -16.250 22.381 hybrid contribution -0.661 0.014 0.705 0.966 sum 6.336 13.722 -15.545 21.682 Atomic orbital electron populations 1.21931 0.93348 1.02393 1.01934 1.20059 0.95636 0.94801 0.91908 1.21835 1.00959 0.94859 1.01748 1.23137 1.01899 0.96347 0.96920 1.20965 0.94869 0.91848 0.90834 0.89635 1.60669 1.03144 1.34128 1.32895 1.21494 0.97569 0.94954 0.87172 1.22009 0.98320 0.95899 0.99354 1.20929 0.88027 0.97844 0.91419 1.44038 1.10115 1.05702 1.71607 1.19196 1.21147 0.85205 1.12309 0.91764 1.25060 1.01792 0.97207 0.95692 1.70003 1.36160 1.28643 1.20282 0.86292 0.79504 0.82984 0.77981 1.21437 1.21600 1.20471 1.20739 0.98248 0.86631 0.89560 1.22427 0.94446 0.99663 1.01623 1.20533 0.97589 0.93678 0.95471 1.20655 0.98755 0.99100 0.92296 1.21027 1.00961 0.96492 0.95825 1.20974 0.99926 0.94222 0.98993 1.20463 1.00758 0.99567 0.91943 1.20493 0.98551 0.95423 0.93841 0.92418 0.91919 0.92091 0.92336 0.92517 0.92630 0.90630 0.90293 0.84085 0.94455 0.91820 0.93654 0.96845 0.92796 0.93699 0.96692 0.89187 0.93786 0.91904 0.86197 0.86183 0.86311 0.86800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 8.32 37.16 0.31 -1.06 16 2 C -0.02 -0.24 0.88 -154.63 -0.14 -0.38 16 3 C -0.14 -1.18 8.31 37.16 0.31 -0.87 16 4 C -0.14 -1.61 5.51 -25.32 -0.14 -1.75 16 5 C 0.13 1.61 2.94 -67.82 -0.20 1.41 16 6 H 0.09 1.16 7.33 -51.93 -0.38 0.78 16 7 N -0.68 -9.87 6.09 -99.81 -0.61 -10.48 16 8 C 0.10 1.64 2.30 -67.67 -0.16 1.49 16 9 C -0.12 -2.10 5.59 -26.61 -0.15 -2.25 16 10 C 0.14 3.10 6.52 -3.71 -0.02 3.07 16 11 N -0.59 -15.01 2.99 -172.31 -0.52 -15.52 16 12 C -0.25 -6.91 9.59 -15.06 -0.14 -7.06 16 13 H 0.06 1.76 7.87 -52.49 -0.41 1.34 16 14 C 0.00 0.02 4.97 -17.43 -0.09 -0.07 16 15 N -0.91 -26.38 11.09 55.49 0.62 -25.77 16 16 Si 0.90 21.85 29.58 -169.99 -5.03 16.83 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 C 0.17 4.18 5.29 -3.71 -0.02 4.16 16 21 C -0.14 -2.72 5.34 -26.61 -0.14 -2.86 16 22 C -0.07 -0.91 5.78 -104.12 -0.60 -1.51 16 23 C -0.09 -1.09 10.04 -39.54 -0.40 -1.48 16 24 C -0.13 -1.32 10.05 -39.63 -0.40 -1.72 16 25 C -0.12 -1.22 10.05 -39.63 -0.40 -1.62 16 26 C -0.11 -1.14 9.78 -39.61 -0.39 -1.53 16 27 C -0.08 -0.94 4.92 -104.19 -0.51 -1.46 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.69 5.78 -51.93 -0.30 0.39 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.05 0.44 8.02 -51.93 -0.42 0.02 16 34 H 0.08 0.79 7.92 -51.93 -0.41 0.38 16 35 H 0.08 0.92 7.84 -51.93 -0.41 0.51 16 36 H 0.34 4.76 5.46 -39.29 -0.21 4.54 16 37 H 0.04 0.65 7.77 -51.92 -0.40 0.25 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.04 0.74 7.61 -51.93 -0.40 0.34 16 40 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.05 1.13 7.93 -51.93 -0.41 0.72 16 42 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 43 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.09 2.42 6.02 -51.93 -0.31 2.10 16 45 H 0.04 0.75 8.10 -51.93 -0.42 0.33 16 46 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 47 H 0.12 1.41 8.06 -52.48 -0.42 0.98 16 48 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 49 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 50 H 0.11 0.98 7.94 -52.49 -0.42 0.57 16 LS Contribution 380.48 15.07 5.73 5.73 Total: -1.00 -29.41 380.48 -11.77 -41.18 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -8.69 Total: 3.52 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: -3.27 Total: -15.49 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: -0.51 Total: -51.77 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.41 -11.77 -41.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610813449.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.536 kcal (2) G-P(sol) polarization free energy of solvation -29.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds