Wall clock time and date at job start Tue Mar 31 2020 11:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 110.26897 * 2 1 4 4 C 1.54342 * 110.30078 * 122.07310 * 2 1 3 5 5 C 1.54350 * 102.39321 * 92.57720 * 4 2 1 6 6 H 1.09001 * 110.30418 * 145.27061 * 5 4 2 7 7 N 1.46905 * 110.30098 * 267.32474 * 5 4 2 8 8 C 1.46897 * 110.99921 * 271.77936 * 7 5 4 9 9 C 1.53042 * 109.46079 * 273.07136 * 8 7 5 10 10 C 1.53201 * 109.31166 * 178.60089 * 9 8 7 11 11 N 1.46925 * 108.76338 * 54.65665 * 10 9 8 12 12 C 1.36938 * 120.63392 * 126.40685 * 11 10 9 13 13 H 1.08000 * 119.99413 * 331.38094 * 12 11 10 14 14 C 1.38811 * 120.00047 * 151.37960 * 12 11 10 15 15 N 1.31610 * 120.00149 * 345.23479 * 14 12 11 16 16 Si 1.86801 * 119.99589 * 165.23369 * 14 12 11 17 17 H 1.48492 * 109.47342 * 90.00063 * 16 14 12 18 18 H 1.48502 * 109.46689 * 210.00215 * 16 14 12 19 19 H 1.48503 * 109.47108 * 329.99972 * 16 14 12 20 20 C 1.46933 * 118.73925 * 306.37887 * 11 10 9 21 21 C 1.53040 * 109.46049 * 153.01575 * 8 7 5 22 22 C 1.51371 * 105.17053 * 26.34531 * 5 4 2 23 23 C 1.38495 * 130.39601 * 162.81482 * 22 5 4 24 24 C 1.38098 * 120.21971 * 179.97438 * 23 22 5 25 25 C 1.38257 * 119.93069 * 359.97438 * 24 23 22 26 26 C 1.38097 * 119.93891 * 0.02562 * 25 24 23 27 27 C 1.38306 * 120.28040 * 0.02562 * 26 25 24 28 28 H 1.09003 * 109.46943 * 59.30320 * 1 2 3 29 29 H 1.08999 * 109.47080 * 179.30023 * 1 2 3 30 30 H 1.08993 * 109.46721 * 299.30059 * 1 2 3 31 31 H 1.08994 * 109.47418 * 60.69574 * 3 2 1 32 32 H 1.08998 * 109.47378 * 180.70321 * 3 2 1 33 33 H 1.09004 * 109.46529 * 300.69778 * 3 2 1 34 34 H 1.09003 * 110.82293 * 210.79804 * 4 2 1 35 35 H 1.09002 * 110.82510 * 334.15281 * 4 2 1 36 36 H 1.00896 * 110.99856 * 35.73393 * 7 5 4 37 37 H 1.09009 * 109.45961 * 33.04284 * 8 7 5 38 38 H 1.08997 * 109.49705 * 298.56327 * 9 8 7 39 39 H 1.08996 * 109.49886 * 58.66275 * 9 8 7 40 40 H 1.08997 * 109.59495 * 294.86664 * 10 9 8 41 41 H 1.09000 * 109.70232 * 174.50112 * 10 9 8 42 42 H 0.97007 * 119.99983 * 179.97438 * 15 14 12 43 43 H 1.09000 * 109.58532 * 293.82781 * 20 11 10 44 44 H 1.08992 * 109.70340 * 173.46628 * 20 11 10 45 45 H 1.09003 * 109.49554 * 301.33383 * 21 8 7 46 46 H 1.08994 * 109.49750 * 61.43274 * 21 8 7 47 47 H 1.08003 * 119.88722 * 0.02562 * 23 22 5 48 48 H 1.07994 * 120.03272 * 179.97438 * 24 23 22 49 49 H 1.08006 * 120.02814 * 179.97438 * 25 24 23 50 50 H 1.08000 * 119.89841 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0601 1.4352 0.0000 4 6 2.0656 -0.7687 1.2266 5 6 2.2441 -2.1973 0.6703 6 1 3.1106 -2.6755 1.1270 7 7 1.0347 -2.9945 0.9153 8 6 1.0947 -3.6522 2.2275 9 6 1.8178 -4.9942 2.0926 10 6 1.9092 -5.6610 3.4688 11 7 0.5580 -5.7584 4.0375 12 6 0.0698 -6.9609 4.4743 13 1 0.4155 -7.8796 4.0240 14 6 -0.8694 -6.9989 5.4957 15 7 -1.0777 -5.9325 6.2383 16 14 -1.8378 -8.5639 5.8162 17 1 -1.1055 -9.4076 6.7945 18 1 -3.1733 -8.2160 6.3645 19 1 -2.0044 -9.3121 4.5443 20 6 -0.2593 -4.5408 4.1293 21 6 -0.3261 -3.8864 2.7458 22 6 2.4655 -2.0186 -0.8165 23 6 2.9849 -2.8916 -1.7578 24 6 3.0935 -2.5049 -3.0791 25 6 2.6822 -1.2425 -3.4645 26 6 2.1641 -0.3705 -2.5273 27 6 2.0548 -0.7541 -1.2030 28 1 -0.3633 0.5246 -0.8837 29 1 -0.3633 -1.0276 -0.0126 30 1 -0.3632 0.5029 0.8962 31 1 1.7142 1.9503 0.8961 32 1 3.1499 1.4201 -0.0126 33 1 1.6937 1.9577 -0.8837 34 1 3.0208 -0.3584 1.5543 35 1 1.3401 -0.7542 2.0400 36 1 0.2046 -2.4269 0.8329 37 1 1.6366 -3.0165 2.9279 38 1 1.2629 -5.6396 1.4116 39 1 2.8215 -4.8290 1.7012 40 1 2.5395 -5.0606 4.1248 41 1 2.3351 -6.6591 3.3660 42 1 -1.7343 -5.9590 6.9519 43 1 0.1942 -3.8490 4.8392 44 1 -1.2652 -4.7976 4.4610 45 1 -0.8483 -2.9325 2.8194 46 1 -0.8605 -4.5423 2.0586 47 1 3.3053 -3.8784 -1.4577 48 1 3.4993 -3.1880 -3.8106 49 1 2.7668 -0.9382 -4.4973 50 1 1.8433 0.6157 -2.8290 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610813449.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:55 Heat of formation + Delta-G solvation = 24.043832 kcal Electronic energy + Delta-G solvation = -26989.855533 eV Core-core repulsion = 23594.841667 eV Total energy + Delta-G solvation = -3395.013866 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.68504 -39.46324 -37.68628 -36.12731 -34.15678 -32.64913 -31.52762 -30.88992 -30.53446 -28.81828 -28.15511 -26.50708 -24.68619 -23.77661 -23.61041 -22.93230 -21.46140 -20.72467 -20.13409 -18.74896 -17.33392 -16.98648 -16.65394 -16.08733 -15.97882 -15.73821 -15.51348 -15.31873 -15.01374 -14.75083 -14.62878 -14.51591 -14.26038 -13.83607 -13.78704 -13.47472 -13.19223 -13.13083 -12.95151 -12.88782 -12.83424 -12.60282 -12.48122 -12.42712 -12.16910 -12.02454 -11.87782 -11.80860 -11.77869 -11.38017 -11.36703 -11.22671 -11.15288 -10.54490 -9.65981 -9.46555 -9.28383 -8.67539 -7.87449 -5.34112 0.50057 0.56938 1.46280 1.47575 1.57634 2.51109 2.83378 3.24226 3.34523 3.44427 3.53629 3.69295 3.95779 4.00297 4.02030 4.18125 4.18426 4.24221 4.32878 4.34274 4.45689 4.52433 4.57264 4.65151 4.69881 4.73366 4.77695 4.80433 4.86474 4.91774 4.97354 4.99606 5.01556 5.08533 5.09489 5.14287 5.20484 5.24772 5.25444 5.36380 5.39885 5.41068 5.53451 5.64031 5.65707 5.69282 5.74332 5.84926 6.13967 6.21438 6.39875 6.52128 7.15169 7.85866 8.37826 9.18848 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.023141 B = 0.003065 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.693308 B = 9131.948624 C = 9752.857956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.021 4.021 3 C -0.133 4.133 4 C -0.141 4.141 5 C 0.125 3.875 6 H 0.076 0.924 7 N -0.675 5.675 8 C 0.110 3.890 9 C -0.102 4.102 10 C 0.142 3.858 11 N -0.611 5.611 12 C -0.264 4.264 13 H 0.064 0.936 14 C -0.050 4.050 15 N -0.935 5.935 16 Si 0.968 3.032 17 H -0.284 1.284 18 H -0.291 1.291 19 H -0.272 1.272 20 C 0.182 3.818 21 C -0.127 4.127 22 C -0.094 4.094 23 C -0.108 4.108 24 C -0.131 4.131 25 C -0.122 4.122 26 C -0.115 4.115 27 C -0.088 4.088 28 H 0.066 0.934 29 H 0.047 0.953 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.343 0.657 37 H 0.036 0.964 38 H 0.051 0.949 39 H 0.068 0.932 40 H 0.012 0.988 41 H 0.053 0.947 42 H 0.250 0.750 43 H -0.004 1.004 44 H 0.056 0.944 45 H 0.066 0.934 46 H 0.051 0.949 47 H 0.115 0.885 48 H 0.139 0.861 49 H 0.145 0.855 50 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.233 15.460 -18.167 24.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.021 4.021 3 C -0.190 4.190 4 C -0.180 4.180 5 C 0.015 3.985 6 H 0.094 0.906 7 N -0.307 5.307 8 C 0.001 3.999 9 C -0.142 4.142 10 C 0.016 3.984 11 N -0.334 5.334 12 C -0.394 4.394 13 H 0.082 0.918 14 C -0.246 4.246 15 N -0.582 5.582 16 Si 0.796 3.204 17 H -0.211 1.211 18 H -0.217 1.217 19 H -0.197 1.197 20 C 0.056 3.944 21 C -0.167 4.167 22 C -0.095 4.095 23 C -0.126 4.126 24 C -0.149 4.149 25 C -0.140 4.140 26 C -0.133 4.133 27 C -0.089 4.089 28 H 0.085 0.915 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.165 0.835 37 H 0.054 0.946 38 H 0.069 0.931 39 H 0.086 0.914 40 H 0.030 0.970 41 H 0.071 0.929 42 H 0.059 0.941 43 H 0.014 0.986 44 H 0.075 0.925 45 H 0.084 0.916 46 H 0.070 0.930 47 H 0.133 0.867 48 H 0.157 0.843 49 H 0.163 0.837 50 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 7.348 14.909 -18.365 24.770 hybrid contribution -0.694 -0.338 1.301 1.513 sum 6.655 14.571 -17.064 23.404 Atomic orbital electron populations 1.21923 0.93134 1.01654 1.02787 1.20044 0.95732 0.95491 0.90821 1.21808 1.00823 0.93773 1.02646 1.23099 1.02209 0.95455 0.97276 1.20967 0.93428 0.92439 0.91619 0.90620 1.60580 1.04280 1.35038 1.30835 1.21213 0.95667 0.94654 0.88409 1.21816 0.99634 0.95912 0.96835 1.21055 0.86215 0.98272 0.92852 1.44309 1.11819 1.05410 1.71897 1.19512 1.21415 0.86204 1.12270 0.91832 1.25815 1.02834 1.00231 0.95684 1.70158 1.36693 1.30529 1.20784 0.85268 0.77775 0.79445 0.77914 1.21058 1.21701 1.19662 1.20531 0.95983 0.86157 0.91775 1.22180 0.96226 0.99928 0.98317 1.20566 0.99129 0.94683 0.95125 1.20809 0.99501 0.99118 0.93222 1.21300 1.00726 0.97318 0.95516 1.21338 0.98656 0.93699 1.00278 1.20767 1.00370 1.00595 0.91553 1.20677 0.98430 0.95060 0.94692 0.91458 0.93376 0.91383 0.91680 0.92683 0.91521 0.89984 0.90779 0.83546 0.94627 0.93066 0.91378 0.96956 0.92874 0.94070 0.98616 0.92517 0.91559 0.92988 0.86665 0.84319 0.83687 0.84813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 8.32 71.98 0.60 -1.86 16 2 C -0.02 -0.38 0.88 -52.26 -0.05 -0.43 16 3 C -0.13 -1.96 8.31 71.98 0.60 -1.36 16 4 C -0.14 -2.98 5.51 31.51 0.17 -2.81 16 5 C 0.13 3.12 2.94 44.84 0.13 3.25 16 6 H 0.08 2.00 7.33 -2.39 -0.02 1.98 16 7 N -0.67 -19.13 6.09 -469.69 -2.86 -21.99 16 8 C 0.11 3.68 2.30 44.94 0.10 3.78 16 9 C -0.10 -3.67 5.59 30.68 0.17 -3.50 16 10 C 0.14 6.13 6.52 86.37 0.56 6.69 16 11 N -0.61 -31.65 2.99 -699.07 -2.09 -33.75 16 12 C -0.26 -14.92 9.59 84.03 0.81 -14.12 16 13 H 0.06 3.52 7.87 -2.91 -0.02 3.50 16 14 C -0.05 -2.87 4.97 84.86 0.42 -2.45 16 15 N -0.94 -55.92 11.09 21.65 0.24 -55.68 16 16 Si 0.97 45.57 29.58 68.60 2.03 47.59 16 17 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 18 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 19 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 20 C 0.18 8.95 5.29 86.36 0.46 9.41 16 21 C -0.13 -4.87 5.34 30.67 0.16 -4.71 16 22 C -0.09 -2.27 5.78 -19.54 -0.11 -2.39 16 23 C -0.11 -2.51 10.04 22.30 0.22 -2.29 16 24 C -0.13 -2.50 10.05 22.24 0.22 -2.27 16 25 C -0.12 -2.07 10.05 22.24 0.22 -1.84 16 26 C -0.11 -2.08 9.78 22.25 0.22 -1.86 16 27 C -0.09 -1.84 4.92 -19.58 -0.10 -1.94 16 28 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.05 1.00 5.78 -2.39 -0.01 0.98 16 30 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.06 0.87 8.14 -2.39 -0.02 0.86 16 32 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.07 0.84 8.02 -2.39 -0.02 0.82 16 34 H 0.08 1.61 7.92 -2.39 -0.02 1.59 16 35 H 0.07 1.63 7.84 -2.39 -0.02 1.61 16 36 H 0.34 9.29 5.46 -89.70 -0.49 8.80 16 37 H 0.04 1.22 7.77 -2.38 -0.02 1.21 16 38 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.07 2.14 7.61 -2.39 -0.02 2.12 16 40 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.05 2.25 7.93 -2.39 -0.02 2.24 16 42 H 0.25 14.44 8.31 -92.70 -0.77 13.67 16 43 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 44 H 0.06 3.16 6.02 -2.39 -0.01 3.14 16 45 H 0.07 2.23 8.10 -2.39 -0.02 2.21 16 46 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 47 H 0.12 2.66 8.06 -2.91 -0.02 2.64 16 48 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 49 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 50 H 0.13 1.83 7.94 -2.91 -0.02 1.81 16 Total: -1.00 -63.93 380.48 2.55 -61.38 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: 0.41 Total: 23.12 kcal Atomic # 6 Polarization: -25.51 SS G_CDS: 4.82 Total: -20.68 kcal Atomic # 7 Polarization: -106.70 SS G_CDS: -4.71 Total: -111.41 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.59 kcal Total: -63.93 2.55 -61.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610813449.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.428 kcal (2) G-P(sol) polarization free energy of solvation -63.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds