Wall clock time and date at job start Tue Mar 31 2020 11:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38269 * 120.11774 * 2 1 4 4 C 1.37927 * 119.77435 * 179.85904 * 3 2 1 5 5 C 1.38912 * 120.54407 * 359.97438 * 4 3 2 6 6 C 1.37659 * 119.68352 * 0.23622 * 5 4 3 7 7 C 1.37934 * 120.11520 * 179.97438 * 2 1 3 8 8 C 1.50635 * 122.56310 * 179.61609 * 6 5 4 9 9 H 1.08998 * 109.25509 * 257.52596 * 8 6 5 10 10 N 1.46900 * 109.25356 * 138.05492 * 8 6 5 11 11 C 1.46900 * 111.00011 * 158.22281 * 10 8 6 12 12 C 1.53044 * 109.46035 * 273.18875 * 11 10 8 13 13 C 1.53188 * 109.31031 * 178.59880 * 12 11 10 14 14 N 1.46931 * 108.76810 * 54.65714 * 13 12 11 15 15 C 1.36932 * 120.63012 * 126.40234 * 14 13 12 16 16 H 1.08005 * 119.99631 * 213.97435 * 15 14 13 17 17 C 1.38804 * 120.00449 * 33.97684 * 15 14 13 18 18 N 1.31624 * 119.99917 * 15.21933 * 17 15 14 19 19 Si 1.86808 * 120.00251 * 195.22266 * 17 15 14 20 20 H 1.48498 * 109.46904 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46967 * 119.99856 * 19 17 15 22 22 H 1.48493 * 109.47096 * 240.00139 * 19 17 15 23 23 C 1.46928 * 118.73523 * 306.38054 * 14 13 12 24 24 C 1.53039 * 109.45997 * 153.13283 * 11 10 8 25 25 C 1.52736 * 110.58809 * 17.77101 * 8 6 5 26 26 C 1.53324 * 108.39063 * 308.90493 * 25 8 6 27 27 C 1.50632 * 117.74963 * 180.56618 * 5 4 3 28 28 H 1.08998 * 109.46798 * 270.02489 * 1 2 3 29 29 H 1.09000 * 109.47003 * 30.02618 * 1 2 3 30 30 H 1.08993 * 109.47054 * 150.02558 * 1 2 3 31 31 H 1.08002 * 120.11103 * 359.83706 * 3 2 1 32 32 H 1.08001 * 119.72540 * 179.97438 * 4 3 2 33 33 H 1.08001 * 119.72392 * 0.05803 * 7 2 1 34 34 H 1.00900 * 111.00462 * 282.17793 * 10 8 6 35 35 H 1.09004 * 109.46106 * 33.15961 * 11 10 8 36 36 H 1.09003 * 109.49137 * 298.56418 * 12 11 10 37 37 H 1.09000 * 109.50006 * 58.65785 * 12 11 10 38 38 H 1.08998 * 109.60463 * 294.86604 * 13 12 11 39 39 H 1.09004 * 109.58376 * 174.43185 * 13 12 11 40 40 H 0.97004 * 119.99548 * 179.97438 * 18 17 15 41 41 H 1.08999 * 109.58686 * 293.82306 * 23 14 13 42 42 H 1.08993 * 109.70276 * 173.46350 * 23 14 13 43 43 H 1.09002 * 109.49624 * 301.33430 * 24 11 10 44 44 H 1.08993 * 109.50063 * 61.43632 * 24 11 10 45 45 H 1.09005 * 109.67833 * 68.62968 * 25 8 6 46 46 H 1.09002 * 109.68100 * 189.17413 * 25 8 6 47 47 H 1.08999 * 109.68591 * 310.13976 * 26 25 8 48 48 H 1.09006 * 109.67736 * 189.58446 * 26 25 8 49 49 H 1.09002 * 109.25565 * 317.73880 * 27 5 4 50 50 H 1.09005 * 109.25255 * 77.20388 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2008 1.1960 0.0000 4 6 3.5800 1.1878 0.0029 5 6 4.2788 -0.0128 0.0064 6 6 3.5881 -1.2036 0.0021 7 6 2.1991 -1.1932 0.0005 8 6 4.2795 -2.5419 -0.0030 9 1 4.2469 -2.9595 -1.0093 10 7 3.5855 -3.4492 0.9206 11 6 3.8640 -4.8528 0.5884 12 6 2.8643 -5.3353 -0.4653 13 6 3.1795 -6.7881 -0.8347 14 7 3.1981 -7.5948 0.3932 15 6 2.4294 -8.7231 0.4984 16 1 2.0028 -8.9989 1.4515 17 6 2.1984 -9.5124 -0.6198 18 7 2.9407 -9.3619 -1.6963 19 14 0.8340 -10.7881 -0.5970 20 1 0.1507 -10.7585 0.7211 21 1 -0.1469 -10.4831 -1.6694 22 1 1.4131 -12.1364 -0.8247 23 6 4.0576 -7.1681 1.5058 24 6 3.7328 -5.7107 1.8488 25 6 5.7358 -2.3957 0.4337 26 6 6.3831 -1.2868 -0.4041 27 6 5.7837 0.0516 0.0227 28 1 -0.3633 0.0004 1.0277 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5134 31 1 1.6645 2.1335 -0.0027 32 1 4.1212 2.1224 0.0025 33 1 1.6564 -2.1270 0.0000 34 1 3.8321 -3.2485 1.8782 35 1 4.8767 -4.9387 0.1944 36 1 1.8533 -5.2731 -0.0628 37 1 2.9418 -4.7090 -1.3540 38 1 4.1542 -6.8389 -1.3200 39 1 2.4127 -7.1681 -1.5099 40 1 2.7794 -9.9137 -2.4776 41 1 5.1039 -7.2496 1.2113 42 1 3.8726 -7.7982 2.3757 43 1 4.4285 -5.3518 2.6073 44 1 2.7135 -5.6451 2.2292 45 1 5.7772 -2.1295 1.4900 46 1 6.2640 -3.3351 0.2705 47 1 6.1805 -1.4594 -1.4611 48 1 7.4596 -1.2782 -0.2327 49 1 6.1176 0.8301 -0.6632 50 1 6.1223 0.2914 1.0307 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611104182.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:38 Heat of formation + Delta-G solvation = 22.750377 kcal Electronic energy + Delta-G solvation = -26761.886491 eV Core-core repulsion = 23366.816537 eV Total energy + Delta-G solvation = -3395.069955 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.28631 -38.07992 -36.54206 -34.71162 -32.65723 -31.77498 -30.91744 -29.93528 -29.33289 -27.94243 -26.25760 -24.55021 -23.24627 -22.29874 -22.02229 -21.82060 -20.93330 -19.29330 -18.91459 -16.74400 -16.21817 -15.69548 -15.46517 -15.01772 -14.72702 -14.61344 -14.05519 -13.85146 -13.73042 -13.58386 -13.45896 -13.19650 -13.02806 -12.85868 -12.56580 -12.33550 -12.22579 -12.12465 -11.91616 -11.45874 -11.35975 -11.24561 -11.10075 -11.01777 -10.93315 -10.73335 -10.56190 -10.36960 -10.17051 -10.14443 -9.93098 -9.51823 -9.47879 -8.65465 -8.46335 -8.36435 -8.07777 -6.55709 -5.76826 -3.24709 1.36957 1.47580 3.38257 3.46187 3.48742 3.74351 4.33184 4.51589 4.58283 4.67375 4.83150 4.89923 4.97828 5.07369 5.15486 5.31815 5.35985 5.39920 5.43680 5.48341 5.50798 5.52641 5.58548 5.60564 5.73277 5.76627 5.79645 5.86609 5.90383 5.93395 6.01997 6.13314 6.17445 6.19901 6.24390 6.37514 6.45130 6.51072 6.61813 6.67470 6.68656 6.77889 6.78677 6.83488 7.03252 7.10581 7.39374 7.41832 7.64230 7.69661 7.84276 8.51893 9.25103 9.86816 10.47645 11.31516 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.018059 B = 0.003203 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.080349 B = 8741.044340 C = 9654.405710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.100 4.100 3 C -0.123 4.123 4 C -0.127 4.127 5 C -0.083 4.083 6 C -0.063 4.063 7 C -0.085 4.085 8 C 0.128 3.872 9 H 0.089 0.911 10 N -0.679 5.679 11 C 0.097 3.903 12 C -0.124 4.124 13 C 0.175 3.825 14 N -0.590 5.590 15 C -0.256 4.256 16 H 0.062 0.938 17 C 0.008 3.992 18 N -0.900 5.900 19 Si 0.900 3.100 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.290 1.290 23 C 0.149 3.851 24 C -0.133 4.133 25 C -0.148 4.148 26 C -0.116 4.116 27 C -0.078 4.078 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.133 0.867 34 H 0.336 0.664 35 H 0.038 0.962 36 H 0.060 0.940 37 H 0.043 0.957 38 H 0.016 0.984 39 H 0.077 0.923 40 H 0.253 0.747 41 H 0.014 0.986 42 H 0.054 0.946 43 H 0.045 0.955 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.068 0.932 47 H 0.066 0.934 48 H 0.065 0.935 49 H 0.070 0.930 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.251 21.427 3.550 21.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.100 4.100 3 C -0.141 4.141 4 C -0.146 4.146 5 C -0.084 4.084 6 C -0.064 4.064 7 C -0.103 4.103 8 C 0.018 3.982 9 H 0.107 0.893 10 N -0.309 5.309 11 C -0.012 4.012 12 C -0.164 4.164 13 C 0.049 3.951 14 N -0.313 5.313 15 C -0.386 4.386 16 H 0.080 0.920 17 C -0.192 4.192 18 N -0.543 5.543 19 Si 0.730 3.270 20 H -0.202 1.202 21 H -0.215 1.215 22 H -0.217 1.217 23 C 0.022 3.978 24 C -0.173 4.173 25 C -0.187 4.187 26 C -0.154 4.154 27 C -0.115 4.115 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.151 0.849 34 H 0.154 0.846 35 H 0.056 0.944 36 H 0.078 0.922 37 H 0.062 0.938 38 H 0.034 0.966 39 H 0.095 0.905 40 H 0.063 0.937 41 H 0.032 0.968 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.087 0.913 47 H 0.085 0.915 48 H 0.084 0.916 49 H 0.089 0.911 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.630 21.311 3.054 21.688 hybrid contribution 0.278 -0.649 0.213 0.737 sum 2.908 20.662 3.267 21.120 Atomic orbital electron populations 1.20752 0.91453 1.02522 1.02128 1.19895 0.95989 0.93307 1.00788 1.20888 0.94099 0.97357 1.01744 1.21004 0.94182 0.97122 1.02244 1.19588 0.95240 0.92529 1.00995 1.19554 0.93653 0.93396 0.99763 1.21170 0.93652 0.97823 0.97664 1.20343 0.89825 0.90101 0.97950 0.89325 1.60714 1.60793 1.03378 1.05986 1.21481 0.97465 0.85481 0.96742 1.22204 0.98904 0.98836 0.96450 1.20693 0.99426 0.86056 0.88938 1.43982 1.48268 1.26416 1.12611 1.19157 1.23349 1.00186 0.95862 0.92027 1.25193 0.98794 0.97437 0.97749 1.70042 1.38245 1.41519 1.04539 0.86262 0.81929 0.81180 0.77630 1.20163 1.21525 1.21701 1.20857 0.93212 0.91634 0.92147 1.22219 1.01422 0.98034 0.95609 1.22289 0.97120 0.99214 1.00095 1.21491 0.99465 0.94194 1.00242 1.20447 0.91316 0.98076 1.01655 0.91426 0.92022 0.91432 0.86669 0.86703 0.84890 0.84602 0.94394 0.92155 0.93795 0.96606 0.90485 0.93724 0.96782 0.92751 0.93607 0.91584 0.91704 0.91313 0.91517 0.91614 0.91120 0.91012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 10.02 36.01 0.36 -0.72 16 2 C -0.10 -1.17 5.87 -104.72 -0.62 -1.79 16 3 C -0.12 -1.33 9.71 -39.68 -0.39 -1.71 16 4 C -0.13 -1.36 9.61 -39.45 -0.38 -1.74 16 5 C -0.08 -0.95 5.74 -104.62 -0.60 -1.55 16 6 C -0.06 -0.81 5.55 -104.62 -0.58 -1.39 16 7 C -0.08 -1.12 8.87 -39.44 -0.35 -1.47 16 8 C 0.13 1.65 2.31 -69.03 -0.16 1.49 16 9 H 0.09 1.28 7.23 -51.93 -0.38 0.90 16 10 N -0.68 -9.53 5.14 -101.09 -0.52 -10.05 16 11 C 0.10 1.61 2.25 -67.67 -0.15 1.46 16 12 C -0.12 -2.40 5.59 -26.61 -0.15 -2.55 16 13 C 0.18 4.20 5.26 -3.71 -0.02 4.18 16 14 N -0.59 -14.89 2.96 -172.32 -0.51 -15.40 16 15 C -0.26 -7.09 9.52 -15.06 -0.14 -7.23 16 16 H 0.06 1.69 7.87 -52.48 -0.41 1.28 16 17 C 0.01 0.21 4.91 -17.43 -0.09 0.13 16 18 N -0.90 -26.36 11.54 55.49 0.64 -25.72 16 19 Si 0.90 21.80 29.58 -169.99 -5.03 16.78 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 C 0.15 3.14 6.51 -3.71 -0.02 3.11 16 24 C -0.13 -2.30 5.34 -26.61 -0.14 -2.44 16 25 C -0.15 -1.65 5.18 -26.70 -0.14 -1.79 16 26 C -0.12 -1.12 5.98 -26.70 -0.16 -1.28 16 27 C -0.08 -0.73 5.67 -28.05 -0.16 -0.89 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 30 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 31 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 32 H 0.11 0.98 8.05 -52.49 -0.42 0.56 16 33 H 0.13 1.89 7.61 -52.49 -0.40 1.49 16 34 H 0.34 4.44 8.01 -39.29 -0.31 4.12 16 35 H 0.04 0.66 6.89 -51.93 -0.36 0.30 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 37 H 0.04 0.80 7.50 -51.93 -0.39 0.41 16 38 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.08 2.07 6.47 -51.93 -0.34 1.73 16 40 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 41 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 42 H 0.05 1.13 7.94 -51.93 -0.41 0.72 16 43 H 0.05 0.68 8.10 -51.93 -0.42 0.25 16 44 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 45 H 0.06 0.70 7.95 -51.93 -0.41 0.29 16 46 H 0.07 0.81 7.30 -51.93 -0.38 0.43 16 47 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 48 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16 50 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 381.12 15.07 5.74 5.74 Total: -1.00 -29.28 381.12 -12.39 -41.67 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -8.83 Total: 3.16 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: -3.88 Total: -16.18 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: -0.39 Total: -51.16 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.28 -12.39 -41.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611104182.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.420 kcal (2) G-P(sol) polarization free energy of solvation -29.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds