Wall clock time and date at job start Tue Mar 31 2020 11:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38269 * 120.11774 * 2 1 4 4 C 1.37927 * 119.77435 * 179.85904 * 3 2 1 5 5 C 1.38912 * 120.54407 * 359.97438 * 4 3 2 6 6 C 1.37659 * 119.68352 * 0.23622 * 5 4 3 7 7 C 1.37934 * 120.11520 * 179.97438 * 2 1 3 8 8 C 1.50635 * 122.56310 * 179.61609 * 6 5 4 9 9 H 1.08998 * 109.25509 * 257.52596 * 8 6 5 10 10 N 1.46900 * 109.25356 * 138.05492 * 8 6 5 11 11 C 1.46900 * 111.00011 * 158.22281 * 10 8 6 12 12 C 1.53044 * 109.46035 * 273.18875 * 11 10 8 13 13 C 1.53188 * 109.31031 * 178.59880 * 12 11 10 14 14 N 1.46931 * 108.76810 * 54.65714 * 13 12 11 15 15 C 1.36932 * 120.63012 * 126.40234 * 14 13 12 16 16 H 1.08005 * 119.99631 * 213.97435 * 15 14 13 17 17 C 1.38804 * 120.00449 * 33.97684 * 15 14 13 18 18 N 1.31624 * 119.99917 * 15.21933 * 17 15 14 19 19 Si 1.86808 * 120.00251 * 195.22266 * 17 15 14 20 20 H 1.48498 * 109.46904 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46967 * 119.99856 * 19 17 15 22 22 H 1.48493 * 109.47096 * 240.00139 * 19 17 15 23 23 C 1.46928 * 118.73523 * 306.38054 * 14 13 12 24 24 C 1.53039 * 109.45997 * 153.13283 * 11 10 8 25 25 C 1.52736 * 110.58809 * 17.77101 * 8 6 5 26 26 C 1.53324 * 108.39063 * 308.90493 * 25 8 6 27 27 C 1.50632 * 117.74963 * 180.56618 * 5 4 3 28 28 H 1.08998 * 109.46798 * 270.02489 * 1 2 3 29 29 H 1.09000 * 109.47003 * 30.02618 * 1 2 3 30 30 H 1.08993 * 109.47054 * 150.02558 * 1 2 3 31 31 H 1.08002 * 120.11103 * 359.83706 * 3 2 1 32 32 H 1.08001 * 119.72540 * 179.97438 * 4 3 2 33 33 H 1.08001 * 119.72392 * 0.05803 * 7 2 1 34 34 H 1.00900 * 111.00462 * 282.17793 * 10 8 6 35 35 H 1.09004 * 109.46106 * 33.15961 * 11 10 8 36 36 H 1.09003 * 109.49137 * 298.56418 * 12 11 10 37 37 H 1.09000 * 109.50006 * 58.65785 * 12 11 10 38 38 H 1.08998 * 109.60463 * 294.86604 * 13 12 11 39 39 H 1.09004 * 109.58376 * 174.43185 * 13 12 11 40 40 H 0.97004 * 119.99548 * 179.97438 * 18 17 15 41 41 H 1.08999 * 109.58686 * 293.82306 * 23 14 13 42 42 H 1.08993 * 109.70276 * 173.46350 * 23 14 13 43 43 H 1.09002 * 109.49624 * 301.33430 * 24 11 10 44 44 H 1.08993 * 109.50063 * 61.43632 * 24 11 10 45 45 H 1.09005 * 109.67833 * 68.62968 * 25 8 6 46 46 H 1.09002 * 109.68100 * 189.17413 * 25 8 6 47 47 H 1.08999 * 109.68591 * 310.13976 * 26 25 8 48 48 H 1.09006 * 109.67736 * 189.58446 * 26 25 8 49 49 H 1.09002 * 109.25565 * 317.73880 * 27 5 4 50 50 H 1.09005 * 109.25255 * 77.20388 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2008 1.1960 0.0000 4 6 3.5800 1.1878 0.0029 5 6 4.2788 -0.0128 0.0064 6 6 3.5881 -1.2036 0.0021 7 6 2.1991 -1.1932 0.0005 8 6 4.2795 -2.5419 -0.0030 9 1 4.2469 -2.9595 -1.0093 10 7 3.5855 -3.4492 0.9206 11 6 3.8640 -4.8528 0.5884 12 6 2.8643 -5.3353 -0.4653 13 6 3.1795 -6.7881 -0.8347 14 7 3.1981 -7.5948 0.3932 15 6 2.4294 -8.7231 0.4984 16 1 2.0028 -8.9989 1.4515 17 6 2.1984 -9.5124 -0.6198 18 7 2.9407 -9.3619 -1.6963 19 14 0.8340 -10.7881 -0.5970 20 1 0.1507 -10.7585 0.7211 21 1 -0.1469 -10.4831 -1.6694 22 1 1.4131 -12.1364 -0.8247 23 6 4.0576 -7.1681 1.5058 24 6 3.7328 -5.7107 1.8488 25 6 5.7358 -2.3957 0.4337 26 6 6.3831 -1.2868 -0.4041 27 6 5.7837 0.0516 0.0227 28 1 -0.3633 0.0004 1.0277 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5134 31 1 1.6645 2.1335 -0.0027 32 1 4.1212 2.1224 0.0025 33 1 1.6564 -2.1270 0.0000 34 1 3.8321 -3.2485 1.8782 35 1 4.8767 -4.9387 0.1944 36 1 1.8533 -5.2731 -0.0628 37 1 2.9418 -4.7090 -1.3540 38 1 4.1542 -6.8389 -1.3200 39 1 2.4127 -7.1681 -1.5099 40 1 2.7794 -9.9137 -2.4776 41 1 5.1039 -7.2496 1.2113 42 1 3.8726 -7.7982 2.3757 43 1 4.4285 -5.3518 2.6073 44 1 2.7135 -5.6451 2.2292 45 1 5.7772 -2.1295 1.4900 46 1 6.2640 -3.3351 0.2705 47 1 6.1805 -1.4594 -1.4611 48 1 7.4596 -1.2782 -0.2327 49 1 6.1176 0.8301 -0.6632 50 1 6.1223 0.2914 1.0307 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611104182.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:37 Heat of formation + Delta-G solvation = 8.639397 kcal Electronic energy + Delta-G solvation = -26762.498389 eV Core-core repulsion = 23366.816537 eV Total energy + Delta-G solvation = -3395.681853 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.20667 -39.52016 -37.68839 -36.02068 -34.22828 -32.77601 -32.23579 -31.64975 -30.63507 -29.04162 -27.28368 -26.29543 -24.33021 -23.85136 -23.20427 -22.81362 -22.22436 -20.80001 -19.98210 -18.69113 -17.20949 -16.97716 -16.55203 -16.36912 -15.91180 -15.74349 -15.63745 -15.33605 -14.90856 -14.78577 -14.57905 -14.46363 -14.22726 -14.00784 -13.77423 -13.63510 -13.39613 -13.11014 -13.01807 -12.91389 -12.82802 -12.64163 -12.59069 -12.24505 -12.14189 -12.00335 -11.93986 -11.86399 -11.80729 -11.50364 -11.32345 -11.15267 -11.10367 -10.58391 -9.57342 -9.25904 -9.19948 -8.62286 -7.89192 -5.40939 0.50424 0.59005 1.44600 1.46440 1.57420 2.49669 2.84801 3.18215 3.29311 3.68822 3.71030 3.82841 3.94299 4.05675 4.09064 4.14784 4.17110 4.24362 4.32895 4.42743 4.45616 4.54844 4.56654 4.66392 4.71629 4.72572 4.78635 4.84839 4.86233 4.89407 4.96553 5.01383 5.04998 5.08984 5.11995 5.13640 5.18529 5.21629 5.30656 5.37217 5.39468 5.43048 5.46524 5.64715 5.66073 5.71929 5.80977 5.85164 6.15689 6.27301 6.40816 6.55860 7.14622 7.83691 8.39325 9.17005 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.018059 B = 0.003203 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.080349 B = 8741.044340 C = 9654.405710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.111 4.111 3 C -0.125 4.125 4 C -0.129 4.129 5 C -0.089 4.089 6 C -0.078 4.078 7 C -0.106 4.106 8 C 0.132 3.868 9 H 0.067 0.933 10 N -0.676 5.676 11 C 0.111 3.889 12 C -0.108 4.108 13 C 0.185 3.815 14 N -0.609 5.609 15 C -0.268 4.268 16 H 0.062 0.938 17 C -0.045 4.045 18 N -0.933 5.933 19 Si 0.966 3.034 20 H -0.265 1.265 21 H -0.290 1.290 22 H -0.289 1.289 23 C 0.144 3.856 24 C -0.119 4.119 25 C -0.143 4.143 26 C -0.114 4.114 27 C -0.075 4.075 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.059 0.941 31 H 0.139 0.861 32 H 0.141 0.859 33 H 0.113 0.887 34 H 0.345 0.655 35 H 0.035 0.965 36 H 0.048 0.952 37 H 0.051 0.949 38 H -0.006 1.006 39 H 0.040 0.960 40 H 0.250 0.750 41 H 0.012 0.988 42 H 0.055 0.945 43 H 0.081 0.919 44 H 0.058 0.942 45 H 0.072 0.928 46 H 0.060 0.940 47 H 0.057 0.943 48 H 0.083 0.917 49 H 0.087 0.913 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.680 23.948 4.898 24.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.111 4.111 3 C -0.143 4.143 4 C -0.147 4.147 5 C -0.090 4.090 6 C -0.079 4.079 7 C -0.124 4.124 8 C 0.022 3.978 9 H 0.085 0.915 10 N -0.306 5.306 11 C 0.002 3.998 12 C -0.148 4.148 13 C 0.059 3.941 14 N -0.333 5.333 15 C -0.398 4.398 16 H 0.080 0.920 17 C -0.241 4.241 18 N -0.578 5.578 19 Si 0.794 3.206 20 H -0.190 1.190 21 H -0.216 1.216 22 H -0.216 1.216 23 C 0.018 3.982 24 C -0.158 4.158 25 C -0.182 4.182 26 C -0.152 4.152 27 C -0.112 4.112 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.078 0.922 31 H 0.157 0.843 32 H 0.159 0.841 33 H 0.131 0.869 34 H 0.165 0.835 35 H 0.053 0.947 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.012 0.988 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.030 0.970 42 H 0.074 0.926 43 H 0.100 0.900 44 H 0.077 0.923 45 H 0.091 0.909 46 H 0.079 0.921 47 H 0.076 0.924 48 H 0.101 0.899 49 H 0.106 0.894 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.067 23.858 4.434 24.460 hybrid contribution 0.162 -1.376 -0.204 1.401 sum 3.229 22.482 4.230 23.103 Atomic orbital electron populations 1.20771 0.90344 1.02973 1.02630 1.20146 0.97034 0.93281 1.00608 1.21210 0.94518 0.97816 1.00785 1.21353 0.94363 0.97865 1.01080 1.19872 0.96571 0.92214 1.00324 1.19566 0.93562 0.93709 1.01049 1.21133 0.94109 0.97743 0.99459 1.20279 0.91109 0.89947 0.96468 0.91495 1.60539 1.61422 1.01862 1.06789 1.21170 0.96086 0.87059 0.95520 1.21940 0.99065 0.95940 0.97841 1.20453 0.96951 0.88481 0.88229 1.44244 1.49025 1.26284 1.13710 1.19474 1.23596 1.00787 0.95959 0.92000 1.25962 1.01011 0.99674 0.97487 1.70187 1.39887 1.42685 1.05071 0.85231 0.79037 0.78470 0.77853 1.18964 1.21627 1.21631 1.21014 0.92328 0.94106 0.90758 1.22034 1.01862 0.95390 0.96541 1.22220 0.95620 0.99564 1.00807 1.21488 1.00425 0.93887 0.99376 1.20486 0.89708 0.98162 1.02811 0.90845 0.90318 0.92243 0.84344 0.84118 0.86917 0.83514 0.94722 0.93296 0.93049 0.98758 0.94121 0.94086 0.97038 0.92638 0.90044 0.92314 0.90888 0.92147 0.92393 0.89853 0.89412 0.89764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.02 10.02 71.24 0.71 -1.31 16 2 C -0.11 -2.48 5.87 -19.93 -0.12 -2.60 16 3 C -0.13 -2.40 9.71 22.20 0.22 -2.18 16 4 C -0.13 -2.37 9.61 22.36 0.21 -2.15 16 5 C -0.09 -1.84 5.74 -19.86 -0.11 -1.96 16 6 C -0.08 -1.93 5.55 -19.86 -0.11 -2.04 16 7 C -0.11 -2.79 8.87 22.36 0.20 -2.59 16 8 C 0.13 3.33 2.31 44.06 0.10 3.43 16 9 H 0.07 1.97 7.23 -2.39 -0.02 1.95 16 10 N -0.68 -18.51 5.14 -473.73 -2.43 -20.94 16 11 C 0.11 3.66 2.25 44.94 0.10 3.76 16 12 C -0.11 -4.32 5.59 30.67 0.17 -4.15 16 13 C 0.19 9.29 5.26 86.36 0.45 9.74 16 14 N -0.61 -31.54 2.96 -699.09 -2.07 -33.61 16 15 C -0.27 -15.15 9.52 84.03 0.80 -14.35 16 16 H 0.06 3.43 7.87 -2.91 -0.02 3.41 16 17 C -0.05 -2.59 4.91 84.86 0.42 -2.17 16 18 N -0.93 -56.57 11.54 21.65 0.25 -56.32 16 19 Si 0.97 45.69 29.58 68.60 2.03 47.72 16 20 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 21 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 22 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 23 C 0.14 6.07 6.51 86.36 0.56 6.63 16 24 C -0.12 -3.96 5.34 30.67 0.16 -3.80 16 25 C -0.14 -2.96 5.18 30.61 0.16 -2.80 16 26 C -0.11 -1.95 5.98 30.61 0.18 -1.76 16 27 C -0.07 -1.16 5.67 29.74 0.17 -1.00 16 28 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.08 1.14 8.09 -2.39 -0.02 1.12 16 30 H 0.06 1.16 8.09 -2.39 -0.02 1.14 16 31 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 32 H 0.14 1.82 8.05 -2.91 -0.02 1.80 16 33 H 0.11 3.34 7.61 -2.91 -0.02 3.32 16 34 H 0.35 8.52 8.01 -89.69 -0.72 7.80 16 35 H 0.03 1.19 6.89 -2.39 -0.02 1.17 16 36 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.05 1.95 7.50 -2.39 -0.02 1.93 16 38 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 39 H 0.04 2.30 6.47 -2.38 -0.02 2.29 16 40 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 41 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.06 2.29 7.94 -2.39 -0.02 2.27 16 43 H 0.08 2.18 8.10 -2.39 -0.02 2.16 16 44 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 45 H 0.07 1.40 7.95 -2.38 -0.02 1.38 16 46 H 0.06 1.35 7.30 -2.39 -0.02 1.33 16 47 H 0.06 1.09 8.10 -2.39 -0.02 1.08 16 48 H 0.08 1.15 8.14 -2.38 -0.02 1.14 16 49 H 0.09 1.10 8.13 -2.39 -0.02 1.08 16 50 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 Total: -1.00 -65.02 381.12 2.25 -62.77 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: 0.18 Total: 21.68 kcal Atomic # 6 Polarization: -25.60 SS G_CDS: 4.28 Total: -21.31 kcal Atomic # 7 Polarization: -106.62 SS G_CDS: -4.25 Total: -110.87 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -65.02 2.25 -62.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611104182.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.414 kcal (2) G-P(sol) polarization free energy of solvation -65.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds