Wall clock time and date at job start Tue Mar 31 2020 11:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38143 * 119.89295 * 2 1 4 4 C 1.38213 * 119.93405 * 179.97438 * 3 2 1 5 5 C 1.38140 * 119.93644 * 0.02562 * 4 3 2 6 6 C 1.38458 * 120.21172 * 359.97438 * 5 4 3 7 7 C 1.38256 * 119.85415 * 359.97438 * 6 5 4 8 8 C 1.51365 * 109.75296 * 179.97438 * 7 6 5 9 9 H 1.09004 * 110.30623 * 223.89063 * 8 7 6 10 10 C 1.52999 * 110.38355 * 101.77929 * 8 7 6 11 11 C 1.54350 * 105.17138 * 342.81521 * 8 7 6 12 12 C 1.51374 * 130.39051 * 179.97438 * 6 5 4 13 13 H 1.09000 * 110.30389 * 78.30941 * 12 6 5 14 14 N 1.46891 * 110.30404 * 316.14973 * 12 6 5 15 15 C 1.46908 * 111.00025 * 159.37856 * 14 12 6 16 16 C 1.53040 * 109.46323 * 274.55258 * 15 14 12 17 17 C 1.53190 * 109.31128 * 178.59839 * 16 15 14 18 18 N 1.46924 * 108.76543 * 54.65217 * 17 16 15 19 19 C 1.36943 * 120.62883 * 126.36087 * 18 17 16 20 20 H 1.08005 * 120.00088 * 208.84534 * 19 18 17 21 21 C 1.38812 * 119.99879 * 28.84638 * 19 18 17 22 22 N 1.31611 * 120.00137 * 18.32354 * 21 19 18 23 23 Si 1.86797 * 119.99928 * 198.32988 * 21 19 18 24 24 H 1.48497 * 109.47519 * 94.97415 * 23 21 19 25 25 H 1.48501 * 109.47048 * 214.97484 * 23 21 19 26 26 H 1.48505 * 109.47395 * 334.97191 * 23 21 19 27 27 C 1.46926 * 118.74245 * 306.38708 * 18 17 16 28 28 C 1.53035 * 109.46194 * 154.49300 * 15 14 12 29 29 H 1.09004 * 109.47488 * 270.02100 * 1 2 3 30 30 H 1.08999 * 109.47086 * 30.02180 * 1 2 3 31 31 H 1.09008 * 109.47489 * 150.02087 * 1 2 3 32 32 H 1.07994 * 120.03155 * 0.02562 * 3 2 1 33 33 H 1.07999 * 120.02817 * 180.02562 * 4 3 2 34 34 H 1.08002 * 119.89615 * 180.02562 * 5 4 3 35 35 H 1.08997 * 109.47124 * 304.20376 * 10 8 7 36 36 H 1.08995 * 109.47263 * 64.20748 * 10 8 7 37 37 H 1.09001 * 109.46875 * 184.20739 * 10 8 7 38 38 H 1.09004 * 110.81646 * 268.12286 * 11 8 7 39 39 H 1.08999 * 110.98920 * 144.66070 * 11 8 7 40 40 H 1.00893 * 111.00504 * 283.33318 * 14 12 6 41 41 H 1.09004 * 109.45542 * 34.52129 * 15 14 12 42 42 H 1.08996 * 109.49146 * 298.56376 * 16 15 14 43 43 H 1.09004 * 109.49625 * 58.65725 * 16 15 14 44 44 H 1.09001 * 109.59769 * 294.86461 * 17 16 15 45 45 H 1.08999 * 109.70218 * 174.50526 * 17 16 15 46 46 H 0.97008 * 120.00053 * 180.02562 * 22 21 19 47 47 H 1.09000 * 109.58098 * 293.82002 * 27 18 17 48 48 H 1.08992 * 109.70333 * 173.46836 * 27 18 17 49 49 H 1.09010 * 109.49905 * 301.34215 * 28 15 14 50 50 H 1.09002 * 109.49898 * 61.40463 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.1976 0.0000 4 6 3.5776 1.1986 0.0005 5 6 4.2678 0.0020 0.0005 6 6 3.5795 -1.1993 0.0005 7 6 2.1969 -1.2004 0.0011 8 6 1.6864 -2.6254 0.0003 9 1 0.8650 -2.7325 -0.7082 10 6 1.2316 -3.0292 1.4042 11 6 2.8899 -3.4853 -0.4409 12 6 4.0922 -2.6236 0.0000 13 1 4.4156 -2.9095 1.0009 14 7 5.1993 -2.7665 -0.9548 15 6 6.0167 -3.9460 -0.6406 16 6 7.0686 -3.5731 0.4066 17 6 7.8961 -4.8136 0.7574 18 7 8.4509 -5.3774 -0.4807 19 6 9.7953 -5.6086 -0.6010 20 1 10.2657 -5.5668 -1.5723 21 6 10.5534 -5.8968 0.5256 22 7 9.9633 -6.3016 1.6301 23 14 12.4113 -5.7098 0.4739 24 1 12.7890 -4.3721 0.9964 25 1 13.0383 -6.7636 1.3116 26 1 12.8837 -5.8452 -0.9275 27 6 7.5360 -5.6878 -1.5877 28 6 6.7123 -4.4377 -1.9119 29 1 -0.3634 0.0004 1.0277 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3634 -0.8902 -0.5135 32 1 1.6542 2.1322 0.0004 33 1 4.1174 2.1340 0.0010 34 1 5.3478 0.0036 0.0014 35 1 2.0510 -2.8824 2.1078 36 1 0.3824 -2.4144 1.7019 37 1 0.9376 -4.0788 1.4029 38 1 2.8895 -3.6265 -1.5217 39 1 2.8926 -4.4462 0.0737 40 1 4.8563 -2.8064 -1.9028 41 1 5.3774 -4.7365 -0.2475 42 1 7.7237 -2.8001 0.0048 43 1 6.5732 -3.2008 1.3033 44 1 7.2588 -5.5531 1.2422 45 1 8.7087 -4.5355 1.4285 46 1 10.4931 -6.5026 2.4174 47 1 6.8693 -6.4987 -1.2941 48 1 8.1091 -5.9858 -2.4655 49 1 5.9633 -4.6809 -2.6657 50 1 7.3704 -3.6563 -2.2920 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611248466.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:07 Heat of formation + Delta-G solvation = 31.696928 kcal Electronic energy + Delta-G solvation = -26680.681499 eV Core-core repulsion = 23285.999496 eV Total energy + Delta-G solvation = -3394.682003 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.61008 -38.03057 -36.43329 -34.53885 -33.08527 -31.77754 -30.14817 -29.88489 -29.20454 -27.50221 -26.78884 -24.93151 -24.01442 -22.26381 -22.00776 -21.30359 -20.60965 -19.51470 -19.02089 -16.74202 -16.33942 -15.90833 -15.34267 -14.94517 -14.79112 -14.45789 -13.92708 -13.87422 -13.82915 -13.48709 -13.43803 -13.22294 -13.01382 -12.77026 -12.47446 -12.36130 -12.28507 -12.07871 -11.95566 -11.83362 -11.46427 -11.24688 -11.19283 -10.99800 -10.80434 -10.71072 -10.62082 -10.59922 -10.17480 -10.16476 -9.89110 -9.51619 -9.48484 -8.56484 -8.56064 -8.44907 -8.08547 -6.63525 -5.76305 -3.18250 1.35465 1.39456 3.40236 3.47399 3.48631 3.71418 4.24979 4.43258 4.48811 4.52751 4.81709 4.86458 4.97128 5.04449 5.12049 5.21997 5.31898 5.35626 5.39656 5.45626 5.47385 5.51558 5.53755 5.58125 5.67402 5.69372 5.77590 5.84133 5.85663 5.91236 5.96713 5.99411 6.14841 6.17257 6.22535 6.36454 6.44799 6.51826 6.53305 6.64465 6.68019 6.73924 6.78681 6.82223 7.01866 7.02829 7.40819 7.42734 7.65176 7.71406 7.83840 8.48772 9.24602 9.88236 10.45754 11.32408 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.023785 B = 0.002890 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.941837 B = 9685.018769 C =10084.895920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.080 4.080 3 C -0.125 4.125 4 C -0.123 4.123 5 C -0.089 4.089 6 C -0.072 4.072 7 C -0.094 4.094 8 C -0.047 4.047 9 H 0.075 0.925 10 C -0.139 4.139 11 C -0.146 4.146 12 C 0.127 3.873 13 H 0.093 0.907 14 N -0.678 5.678 15 C 0.097 3.903 16 C -0.124 4.124 17 C 0.172 3.828 18 N -0.591 5.591 19 C -0.252 4.252 20 H 0.065 0.935 21 C 0.003 3.997 22 N -0.902 5.902 23 Si 0.901 3.099 24 H -0.288 1.288 25 H -0.292 1.292 26 H -0.279 1.279 27 C 0.149 3.851 28 C -0.133 4.133 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.125 0.875 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.336 0.664 41 H 0.036 0.964 42 H 0.060 0.940 43 H 0.043 0.957 44 H 0.014 0.986 45 H 0.084 0.916 46 H 0.253 0.747 47 H 0.015 0.985 48 H 0.054 0.946 49 H 0.045 0.955 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.891 11.447 -3.005 23.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.080 4.080 3 C -0.143 4.143 4 C -0.141 4.141 5 C -0.107 4.107 6 C -0.073 4.073 7 C -0.095 4.095 8 C -0.066 4.066 9 H 0.094 0.906 10 C -0.197 4.197 11 C -0.186 4.186 12 C 0.017 3.983 13 H 0.111 0.889 14 N -0.307 5.307 15 C -0.011 4.011 16 C -0.164 4.164 17 C 0.046 3.954 18 N -0.314 5.314 19 C -0.382 4.382 20 H 0.082 0.918 21 C -0.196 4.196 22 N -0.546 5.546 23 Si 0.731 3.269 24 H -0.215 1.215 25 H -0.218 1.218 26 H -0.204 1.204 27 C 0.022 3.978 28 C -0.173 4.173 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.136 0.864 33 H 0.138 0.862 34 H 0.143 0.857 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.155 0.845 41 H 0.055 0.945 42 H 0.079 0.921 43 H 0.062 0.938 44 H 0.033 0.967 45 H 0.102 0.898 46 H 0.063 0.937 47 H 0.032 0.968 48 H 0.073 0.927 49 H 0.064 0.936 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -19.363 11.800 -2.525 22.815 hybrid contribution 0.374 -0.527 -0.201 0.677 sum -18.989 11.273 -2.726 22.250 Atomic orbital electron populations 1.20747 0.91745 1.02366 1.01976 1.19339 0.95550 0.91912 1.01157 1.20868 0.94325 0.96907 1.02174 1.21049 0.94155 0.97853 1.01038 1.20684 1.00441 0.90840 0.98713 1.20486 0.93252 0.94796 0.98768 1.20342 0.94170 0.93985 1.00972 1.20508 0.97739 0.90573 0.97784 0.90637 1.21758 1.01297 1.01004 0.95605 1.23135 0.95125 0.98968 1.01335 1.21066 0.89402 0.90128 0.97710 0.88873 1.60608 1.21637 1.43111 1.05387 1.21476 0.93697 0.89162 0.96803 1.22198 0.96972 1.00779 0.96434 1.20753 0.95776 0.90062 0.88820 1.44046 1.03243 1.71878 1.12211 1.19192 0.83044 1.41947 0.94013 0.91761 1.25044 0.98070 0.99153 0.97323 1.70055 1.34473 1.47157 1.02897 0.86296 0.85727 0.77422 0.77477 1.21461 1.21840 1.20380 1.20841 0.92135 0.92676 0.92197 1.22210 0.98979 1.00516 0.95556 0.91502 0.91910 0.91774 0.86385 0.86169 0.85686 0.92330 0.92590 0.92224 0.90995 0.90409 0.84533 0.94549 0.92128 0.93815 0.96749 0.89782 0.93704 0.96751 0.92733 0.93590 0.91539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 9.87 36.00 0.36 -0.53 16 2 C -0.08 -0.84 5.88 -104.58 -0.62 -1.46 16 3 C -0.12 -1.29 9.69 -39.63 -0.38 -1.68 16 4 C -0.12 -1.37 10.05 -39.63 -0.40 -1.76 16 5 C -0.09 -1.13 10.00 -39.54 -0.40 -1.53 16 6 C -0.07 -0.93 5.79 -104.20 -0.60 -1.54 16 7 C -0.09 -1.09 5.32 -104.21 -0.55 -1.64 16 8 C -0.05 -0.48 2.97 -90.74 -0.27 -0.75 16 9 H 0.08 0.69 7.62 -51.93 -0.40 0.30 16 10 C -0.14 -1.28 9.15 37.16 0.34 -0.94 16 11 C -0.15 -1.62 5.98 -25.31 -0.15 -1.77 16 12 C 0.13 1.66 2.95 -67.83 -0.20 1.46 16 13 H 0.09 1.34 7.22 -51.93 -0.38 0.97 16 14 N -0.68 -9.70 6.07 -99.81 -0.61 -10.30 16 15 C 0.10 1.63 2.31 -67.67 -0.16 1.48 16 16 C -0.12 -2.44 5.58 -26.61 -0.15 -2.59 16 17 C 0.17 4.15 5.31 -3.71 -0.02 4.13 16 18 N -0.59 -14.95 2.99 -172.33 -0.51 -15.47 16 19 C -0.25 -7.01 9.57 -15.06 -0.14 -7.15 16 20 H 0.06 1.76 7.89 -52.48 -0.41 1.35 16 21 C 0.00 0.08 4.87 -17.43 -0.08 -0.01 16 22 N -0.90 -26.44 11.34 55.49 0.63 -25.82 16 23 Si 0.90 21.92 29.59 -169.99 -5.03 16.89 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 C 0.15 3.13 6.51 -3.71 -0.02 3.11 16 28 C -0.13 -2.30 5.35 -26.62 -0.14 -2.45 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 31 H 0.06 0.48 7.29 -51.92 -0.38 0.10 16 32 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.77 7.67 -51.93 -0.40 0.38 16 39 H 0.08 0.85 7.91 -51.93 -0.41 0.44 16 40 H 0.34 4.49 7.81 -39.30 -0.31 4.18 16 41 H 0.04 0.63 7.67 -51.93 -0.40 0.23 16 42 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.04 0.81 7.45 -51.93 -0.39 0.42 16 44 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.08 2.28 6.15 -51.93 -0.32 1.96 16 46 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 47 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 48 H 0.05 1.13 7.94 -51.93 -0.41 0.72 16 49 H 0.05 0.68 8.10 -51.92 -0.42 0.26 16 50 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 LS Contribution 384.90 15.07 5.80 5.80 Total: -1.00 -29.55 384.90 -12.14 -41.69 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -8.82 Total: 2.82 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: -3.60 Total: -15.61 kcal Atomic # 7 Polarization: -51.10 SS G_CDS: -0.49 Total: -51.59 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.03 Total: 16.89 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.55 -12.14 -41.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611248466.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.383 kcal (2) G-P(sol) polarization free energy of solvation -29.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds