Wall clock time and date at job start Tue Mar 31 2020 11:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38143 * 119.89295 * 2 1 4 4 C 1.38213 * 119.93405 * 179.97438 * 3 2 1 5 5 C 1.38140 * 119.93644 * 0.02562 * 4 3 2 6 6 C 1.38458 * 120.21172 * 359.97438 * 5 4 3 7 7 C 1.38256 * 119.85415 * 359.97438 * 6 5 4 8 8 C 1.51365 * 109.75296 * 179.97438 * 7 6 5 9 9 H 1.09004 * 110.30623 * 223.89063 * 8 7 6 10 10 C 1.52999 * 110.38355 * 101.77929 * 8 7 6 11 11 C 1.54350 * 105.17138 * 342.81521 * 8 7 6 12 12 C 1.51374 * 130.39051 * 179.97438 * 6 5 4 13 13 H 1.09000 * 110.30389 * 78.30941 * 12 6 5 14 14 N 1.46891 * 110.30404 * 316.14973 * 12 6 5 15 15 C 1.46908 * 111.00025 * 159.37856 * 14 12 6 16 16 C 1.53040 * 109.46323 * 274.55258 * 15 14 12 17 17 C 1.53190 * 109.31128 * 178.59839 * 16 15 14 18 18 N 1.46924 * 108.76543 * 54.65217 * 17 16 15 19 19 C 1.36943 * 120.62883 * 126.36087 * 18 17 16 20 20 H 1.08005 * 120.00088 * 208.84534 * 19 18 17 21 21 C 1.38812 * 119.99879 * 28.84638 * 19 18 17 22 22 N 1.31611 * 120.00137 * 18.32354 * 21 19 18 23 23 Si 1.86797 * 119.99928 * 198.32988 * 21 19 18 24 24 H 1.48497 * 109.47519 * 94.97415 * 23 21 19 25 25 H 1.48501 * 109.47048 * 214.97484 * 23 21 19 26 26 H 1.48505 * 109.47395 * 334.97191 * 23 21 19 27 27 C 1.46926 * 118.74245 * 306.38708 * 18 17 16 28 28 C 1.53035 * 109.46194 * 154.49300 * 15 14 12 29 29 H 1.09004 * 109.47488 * 270.02100 * 1 2 3 30 30 H 1.08999 * 109.47086 * 30.02180 * 1 2 3 31 31 H 1.09008 * 109.47489 * 150.02087 * 1 2 3 32 32 H 1.07994 * 120.03155 * 0.02562 * 3 2 1 33 33 H 1.07999 * 120.02817 * 180.02562 * 4 3 2 34 34 H 1.08002 * 119.89615 * 180.02562 * 5 4 3 35 35 H 1.08997 * 109.47124 * 304.20376 * 10 8 7 36 36 H 1.08995 * 109.47263 * 64.20748 * 10 8 7 37 37 H 1.09001 * 109.46875 * 184.20739 * 10 8 7 38 38 H 1.09004 * 110.81646 * 268.12286 * 11 8 7 39 39 H 1.08999 * 110.98920 * 144.66070 * 11 8 7 40 40 H 1.00893 * 111.00504 * 283.33318 * 14 12 6 41 41 H 1.09004 * 109.45542 * 34.52129 * 15 14 12 42 42 H 1.08996 * 109.49146 * 298.56376 * 16 15 14 43 43 H 1.09004 * 109.49625 * 58.65725 * 16 15 14 44 44 H 1.09001 * 109.59769 * 294.86461 * 17 16 15 45 45 H 1.08999 * 109.70218 * 174.50526 * 17 16 15 46 46 H 0.97008 * 120.00053 * 180.02562 * 22 21 19 47 47 H 1.09000 * 109.58098 * 293.82002 * 27 18 17 48 48 H 1.08992 * 109.70333 * 173.46836 * 27 18 17 49 49 H 1.09010 * 109.49905 * 301.34215 * 28 15 14 50 50 H 1.09002 * 109.49898 * 61.40463 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.1976 0.0000 4 6 3.5776 1.1986 0.0005 5 6 4.2678 0.0020 0.0005 6 6 3.5795 -1.1993 0.0005 7 6 2.1969 -1.2004 0.0011 8 6 1.6864 -2.6254 0.0003 9 1 0.8650 -2.7325 -0.7082 10 6 1.2316 -3.0292 1.4042 11 6 2.8899 -3.4853 -0.4409 12 6 4.0922 -2.6236 0.0000 13 1 4.4156 -2.9095 1.0009 14 7 5.1993 -2.7665 -0.9548 15 6 6.0167 -3.9460 -0.6406 16 6 7.0686 -3.5731 0.4066 17 6 7.8961 -4.8136 0.7574 18 7 8.4509 -5.3774 -0.4807 19 6 9.7953 -5.6086 -0.6010 20 1 10.2657 -5.5668 -1.5723 21 6 10.5534 -5.8968 0.5256 22 7 9.9633 -6.3016 1.6301 23 14 12.4113 -5.7098 0.4739 24 1 12.7890 -4.3721 0.9964 25 1 13.0383 -6.7636 1.3116 26 1 12.8837 -5.8452 -0.9275 27 6 7.5360 -5.6878 -1.5877 28 6 6.7123 -4.4377 -1.9119 29 1 -0.3634 0.0004 1.0277 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3634 -0.8902 -0.5135 32 1 1.6542 2.1322 0.0004 33 1 4.1174 2.1340 0.0010 34 1 5.3478 0.0036 0.0014 35 1 2.0510 -2.8824 2.1078 36 1 0.3824 -2.4144 1.7019 37 1 0.9376 -4.0788 1.4029 38 1 2.8895 -3.6265 -1.5217 39 1 2.8926 -4.4462 0.0737 40 1 4.8563 -2.8064 -1.9028 41 1 5.3774 -4.7365 -0.2475 42 1 7.7237 -2.8001 0.0048 43 1 6.5732 -3.2008 1.3033 44 1 7.2588 -5.5531 1.2422 45 1 8.7087 -4.5355 1.4285 46 1 10.4931 -6.5026 2.4174 47 1 6.8693 -6.4987 -1.2941 48 1 8.1091 -5.9858 -2.4655 49 1 5.9633 -4.6809 -2.6657 50 1 7.3704 -3.6563 -2.2920 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611248466.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:06 Heat of formation + Delta-G solvation = 17.073278 kcal Electronic energy + Delta-G solvation = -26681.315628 eV Core-core repulsion = 23285.999496 eV Total energy + Delta-G solvation = -3395.316132 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.50356 -39.52005 -37.55709 -35.88642 -34.29737 -33.27093 -31.68116 -31.28186 -30.42197 -28.54630 -27.62008 -26.50097 -25.26104 -23.88914 -23.13438 -22.72335 -21.51706 -20.68480 -20.43274 -18.70327 -17.30923 -17.07879 -16.68536 -16.21014 -15.88028 -15.62805 -15.53770 -15.33086 -14.94214 -14.77165 -14.57876 -14.45880 -14.12375 -13.88148 -13.72209 -13.49226 -13.37212 -13.07197 -12.99852 -12.96052 -12.79629 -12.66038 -12.61312 -12.55268 -12.10710 -12.06624 -11.95437 -11.83209 -11.76537 -11.57057 -11.43795 -11.24440 -11.11755 -10.56055 -9.45475 -9.39429 -9.27071 -8.69626 -7.89074 -5.34211 0.49467 0.53306 1.45313 1.47392 1.56352 2.50477 2.83489 3.17456 3.28902 3.49886 3.59610 3.68753 3.94260 4.05930 4.09602 4.10539 4.17875 4.24393 4.29515 4.44419 4.48955 4.53916 4.55048 4.57906 4.71281 4.71431 4.78840 4.85259 4.86838 4.90713 4.92317 5.00570 5.00880 5.08888 5.09987 5.12616 5.15036 5.20659 5.21369 5.37061 5.39350 5.44909 5.49504 5.64115 5.67312 5.69822 5.74194 5.84453 6.13901 6.22267 6.38232 6.55502 7.13713 7.85090 8.37606 9.17715 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.023785 B = 0.002890 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.941837 B = 9685.018769 C =10084.895920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.085 4.085 3 C -0.126 4.126 4 C -0.128 4.128 5 C -0.110 4.110 6 C -0.093 4.093 7 C -0.100 4.100 8 C -0.042 4.042 9 H 0.092 0.908 10 C -0.137 4.137 11 C -0.142 4.142 12 C 0.128 3.872 13 H 0.073 0.927 14 N -0.676 5.676 15 C 0.111 3.889 16 C -0.109 4.109 17 C 0.182 3.818 18 N -0.610 5.610 19 C -0.264 4.264 20 H 0.066 0.934 21 C -0.050 4.050 22 N -0.934 5.934 23 Si 0.966 3.034 24 H -0.287 1.287 25 H -0.294 1.294 26 H -0.266 1.266 27 C 0.143 3.857 28 C -0.119 4.119 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.143 0.857 33 H 0.136 0.864 34 H 0.110 0.890 35 H 0.041 0.959 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.346 0.654 41 H 0.035 0.965 42 H 0.046 0.954 43 H 0.051 0.949 44 H -0.006 1.006 45 H 0.047 0.953 46 H 0.250 0.750 47 H 0.014 0.986 48 H 0.056 0.944 49 H 0.083 0.917 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.100 12.624 -4.387 25.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.085 4.085 3 C -0.144 4.144 4 C -0.146 4.146 5 C -0.128 4.128 6 C -0.093 4.093 7 C -0.101 4.101 8 C -0.061 4.061 9 H 0.110 0.890 10 C -0.194 4.194 11 C -0.181 4.181 12 C 0.018 3.982 13 H 0.091 0.909 14 N -0.307 5.307 15 C 0.002 3.998 16 C -0.149 4.149 17 C 0.055 3.945 18 N -0.334 5.334 19 C -0.394 4.394 20 H 0.083 0.917 21 C -0.246 4.246 22 N -0.580 5.580 23 Si 0.794 3.206 24 H -0.214 1.214 25 H -0.220 1.220 26 H -0.191 1.191 27 C 0.018 3.982 28 C -0.159 4.159 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.161 0.839 33 H 0.154 0.846 34 H 0.128 0.872 35 H 0.060 0.940 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.166 0.834 41 H 0.053 0.947 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.012 0.988 45 H 0.066 0.934 46 H 0.059 0.941 47 H 0.032 0.968 48 H 0.075 0.925 49 H 0.101 0.899 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -21.599 12.988 -3.941 25.509 hybrid contribution 1.008 -0.859 0.229 1.343 sum -20.591 12.129 -3.712 24.184 Atomic orbital electron populations 1.20794 0.89621 1.03414 1.02830 1.19723 0.97198 0.91542 1.00000 1.21215 0.94085 0.98049 1.01082 1.21282 0.94887 0.97867 1.00579 1.20731 0.99967 0.91842 1.00302 1.20526 0.94198 0.94399 1.00205 1.20556 0.93607 0.95122 1.00805 1.20507 0.97604 0.89423 0.98543 0.89022 1.21746 1.01058 1.01923 0.94718 1.23088 0.94555 0.98701 1.01741 1.21033 0.89675 0.91170 0.96308 0.90913 1.60438 1.22481 1.41484 1.06273 1.21172 0.93113 0.89954 0.95587 1.21943 0.97071 0.97983 0.97867 1.20512 0.94629 0.91162 0.88150 1.44312 1.03357 1.72368 1.13321 1.19518 0.84552 1.41197 0.94134 0.91654 1.25815 1.02311 0.99374 0.97096 1.70200 1.35876 1.48530 1.03412 0.85274 0.80577 0.76940 0.77824 1.21425 1.22037 1.19094 1.21015 0.91899 0.94508 0.90820 1.22031 0.99111 0.98220 0.96488 0.90623 0.90512 0.91156 0.83903 0.84566 0.87151 0.93983 0.91453 0.91201 0.90243 0.90372 0.83382 0.94688 0.93471 0.93075 0.98765 0.93427 0.94123 0.96811 0.92537 0.89904 0.92385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 9.87 71.23 0.70 -0.67 16 2 C -0.08 -1.58 5.88 -19.84 -0.12 -1.70 16 3 C -0.13 -2.32 9.69 22.24 0.22 -2.11 16 4 C -0.13 -2.69 10.05 22.24 0.22 -2.47 16 5 C -0.11 -2.80 10.00 22.30 0.22 -2.58 16 6 C -0.09 -2.33 5.79 -19.59 -0.11 -2.45 16 7 C -0.10 -2.14 5.32 -19.60 -0.10 -2.25 16 8 C -0.04 -0.76 2.97 -10.87 -0.03 -0.79 16 9 H 0.09 1.38 7.62 -2.38 -0.02 1.36 16 10 C -0.14 -2.27 9.15 71.98 0.66 -1.61 16 11 C -0.14 -2.89 5.98 31.51 0.19 -2.70 16 12 C 0.13 3.27 2.95 44.85 0.13 3.41 16 13 H 0.07 2.14 7.22 -2.39 -0.02 2.12 16 14 N -0.68 -18.75 6.07 -469.70 -2.85 -21.60 16 15 C 0.11 3.67 2.31 44.94 0.10 3.77 16 16 C -0.11 -4.39 5.58 30.67 0.17 -4.22 16 17 C 0.18 9.14 5.31 86.36 0.46 9.59 16 18 N -0.61 -31.53 2.99 -699.12 -2.09 -33.62 16 19 C -0.26 -14.91 9.57 84.03 0.80 -14.10 16 20 H 0.07 3.60 7.89 -2.91 -0.02 3.58 16 21 C -0.05 -2.89 4.87 84.86 0.41 -2.48 16 22 N -0.93 -56.66 11.34 21.65 0.25 -56.42 16 23 Si 0.97 45.89 29.59 68.60 2.03 47.92 16 24 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 25 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 26 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 27 C 0.14 6.00 6.51 86.36 0.56 6.56 16 28 C -0.12 -3.96 5.35 30.67 0.16 -3.80 16 29 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.08 0.75 8.08 -2.39 -0.02 0.74 16 31 H 0.07 0.80 7.29 -2.38 -0.02 0.78 16 32 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 33 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 34 H 0.11 3.03 8.06 -2.91 -0.02 3.00 16 35 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.08 1.51 7.67 -2.39 -0.02 1.49 16 39 H 0.08 1.59 7.91 -2.39 -0.02 1.57 16 40 H 0.35 8.57 7.81 -89.70 -0.70 7.87 16 41 H 0.04 1.19 7.67 -2.38 -0.02 1.17 16 42 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.05 1.95 7.45 -2.38 -0.02 1.94 16 44 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 45 H 0.05 2.72 6.15 -2.39 -0.01 2.70 16 46 H 0.25 14.63 8.31 -92.70 -0.77 13.86 16 47 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 48 H 0.06 2.30 7.94 -2.39 -0.02 2.28 16 49 H 0.08 2.19 8.10 -2.38 -0.02 2.17 16 50 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -65.32 384.90 2.19 -63.13 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: 0.20 Total: 21.17 kcal Atomic # 6 Polarization: -25.24 SS G_CDS: 4.66 Total: -20.58 kcal Atomic # 7 Polarization: -106.94 SS G_CDS: -4.70 Total: -111.64 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -65.32 2.19 -63.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611248466.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.200 kcal (2) G-P(sol) polarization free energy of solvation -65.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds