Wall clock time and date at job start Tue Mar 31 2020 11:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38239 * 120.00063 * 2 1 4 4 C 1.38227 * 119.99932 * 180.02562 * 3 2 1 5 5 C 1.38238 * 120.00094 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99903 * 179.97438 * 5 4 3 7 7 H 1.09002 * 109.46940 * 20.00714 * 6 5 4 8 8 N 1.46898 * 109.46846 * 140.00098 * 6 5 4 9 9 C 1.46908 * 111.00126 * 273.83610 * 8 6 5 10 10 C 1.53040 * 109.45905 * 273.43365 * 9 8 6 11 11 C 1.53190 * 109.30833 * 178.61433 * 10 9 8 12 12 N 1.46922 * 108.77728 * 54.63882 * 11 10 9 13 13 C 1.36938 * 120.63561 * 126.41346 * 12 11 10 14 14 H 1.08004 * 119.99308 * 325.81115 * 13 12 11 15 15 C 1.38810 * 120.00421 * 145.81455 * 13 12 11 16 16 N 1.31616 * 119.99521 * 343.72247 * 15 13 12 17 17 Si 1.86800 * 119.99989 * 163.72989 * 15 13 12 18 18 H 1.48491 * 109.47449 * 89.99690 * 17 15 13 19 19 H 1.48503 * 109.46701 * 209.99737 * 17 15 13 20 20 H 1.48500 * 109.47128 * 329.99560 * 17 15 13 21 21 C 1.46923 * 118.73784 * 306.38534 * 12 11 10 22 22 C 1.53041 * 109.45917 * 153.36604 * 9 8 6 23 23 C 1.52994 * 109.47389 * 260.00156 * 6 5 4 24 24 C 1.53001 * 117.49656 * 65.98497 * 23 6 5 25 25 C 1.52997 * 60.03137 * 252.49982 * 24 23 6 26 26 C 1.38231 * 119.99751 * 0.25915 * 5 4 3 27 27 C 1.38230 * 119.99639 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.47211 * 90.00000 * 1 2 3 29 29 H 1.09000 * 109.47393 * 210.01001 * 1 2 3 30 30 H 1.09008 * 109.47409 * 330.00368 * 1 2 3 31 31 H 1.08001 * 119.99908 * 359.96816 * 3 2 1 32 32 H 1.07998 * 119.99706 * 179.97438 * 4 3 2 33 33 H 1.00903 * 111.00249 * 37.78749 * 8 6 5 34 34 H 1.09001 * 109.45916 * 33.39373 * 9 8 6 35 35 H 1.08998 * 109.49624 * 298.56758 * 10 9 8 36 36 H 1.08997 * 109.49655 * 58.66454 * 10 9 8 37 37 H 1.08996 * 109.59171 * 294.84346 * 11 10 9 38 38 H 1.09004 * 109.69936 * 174.49581 * 11 10 9 39 39 H 0.97007 * 119.99445 * 180.02562 * 16 15 13 40 40 H 1.09001 * 109.59250 * 293.82575 * 21 12 11 41 41 H 1.09000 * 109.70705 * 173.46823 * 21 12 11 42 42 H 1.09001 * 109.49689 * 301.33664 * 22 9 8 43 43 H 1.08998 * 109.49682 * 61.39900 * 22 9 8 44 44 H 1.09001 * 115.56451 * 211.67572 * 23 6 5 45 45 H 1.09000 * 117.50238 * 359.97438 * 24 23 6 46 46 H 1.09006 * 117.49912 * 144.99850 * 24 23 6 47 47 H 1.09002 * 117.49621 * 107.50477 * 25 24 23 48 48 H 1.09004 * 117.50064 * 252.51912 * 25 24 23 49 49 H 1.08007 * 119.99796 * 179.72499 * 26 5 4 50 50 H 1.07998 * 120.00523 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.2717 0.0000 -0.0005 6 6 5.7787 0.0000 -0.0017 7 1 6.1423 0.9658 0.3492 8 7 6.2690 -1.0606 0.8886 9 6 6.3590 -0.5841 2.2754 10 6 7.7162 0.0877 2.4965 11 6 7.7929 0.6138 3.9332 12 7 7.5093 -0.4924 4.8577 13 6 8.3811 -0.7978 5.8686 14 1 9.4439 -0.6751 5.7205 15 6 7.8990 -1.2651 7.0835 16 7 6.6269 -1.1174 7.3872 17 14 9.0556 -2.1034 8.2872 18 1 9.6464 -1.0878 9.1951 19 1 8.3000 -3.1017 9.0859 20 1 10.1396 -2.7875 7.5374 21 6 6.2723 -1.2643 4.6773 22 6 6.2126 -1.7694 3.2323 23 6 6.2876 -0.2511 -1.4225 24 6 6.0016 0.8217 -2.4752 25 6 5.2439 -0.5070 -2.5126 26 6 3.5805 -1.1971 -0.0054 27 6 2.1981 -1.1971 0.0005 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3634 -0.8899 0.5140 30 1 -0.3634 0.8901 0.5138 31 1 1.6582 2.1325 -0.0005 32 1 4.1204 2.1325 -0.0010 33 1 5.6876 -1.8829 0.8259 34 1 5.5626 0.1357 2.4644 35 1 8.5125 -0.6382 2.3318 36 1 7.8295 0.9173 1.7987 37 1 7.0559 1.4046 4.0726 38 1 8.7910 1.0061 4.1280 39 1 6.2900 -1.4436 8.2364 40 1 5.4112 -0.6267 4.8773 41 1 6.2655 -2.1128 5.3615 42 1 5.2557 -2.2615 3.0581 43 1 7.0228 -2.4780 3.0603 44 1 7.2333 -0.7882 -1.4953 45 1 5.4504 1.7062 -2.1557 46 1 6.7593 0.9907 -3.2404 47 1 4.1946 -0.4964 -2.2175 48 1 5.5033 -1.2123 -3.3021 49 1 4.1205 -2.1325 -0.0099 50 1 1.6581 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611366205.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:35 Heat of formation + Delta-G solvation = 50.142224 kcal Electronic energy + Delta-G solvation = -26802.986880 eV Core-core repulsion = 23409.104725 eV Total energy + Delta-G solvation = -3393.882155 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.20285 -39.40833 -38.23059 -36.22010 -34.27427 -33.17037 -31.86952 -31.74784 -31.00191 -28.40415 -26.68839 -25.62605 -24.01446 -23.73766 -22.99606 -22.79348 -22.31687 -20.75602 -20.42213 -18.71784 -17.63819 -16.94793 -16.77084 -16.52691 -16.09103 -15.85210 -15.56682 -15.34840 -15.12414 -14.84315 -14.79814 -14.50395 -14.30424 -14.17760 -13.76378 -13.61273 -13.13157 -13.01053 -12.98310 -12.95528 -12.65018 -12.46953 -12.37956 -12.26630 -12.16879 -12.02856 -11.91375 -11.83635 -11.80426 -11.35311 -11.20389 -10.99807 -10.78747 -10.56491 -9.82952 -9.50226 -9.27558 -8.61989 -7.89213 -5.40728 0.40641 0.49209 1.45838 1.47203 1.57697 2.50431 2.81916 2.87364 3.16448 3.28195 3.68684 3.78111 3.88395 3.99623 4.03141 4.07513 4.12474 4.13732 4.17058 4.28168 4.43210 4.47256 4.54133 4.55298 4.63645 4.69903 4.77945 4.81361 4.82257 4.84581 4.87290 4.93775 4.98769 5.03265 5.08236 5.12041 5.18158 5.23808 5.26221 5.32943 5.37553 5.41540 5.46677 5.51929 5.61448 5.65286 5.70009 5.70396 6.11701 6.18020 6.40958 6.49593 7.14566 7.83351 8.39944 9.16933 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.016635 B = 0.003366 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.822425 B = 8317.636152 C = 9345.575829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.099 4.099 3 C -0.127 4.127 4 C -0.123 4.123 5 C -0.113 4.113 6 C 0.160 3.840 7 H 0.077 0.923 8 N -0.671 5.671 9 C 0.113 3.887 10 C -0.102 4.102 11 C 0.142 3.858 12 N -0.608 5.608 13 C -0.271 4.271 14 H 0.062 0.938 15 C -0.043 4.043 16 N -0.933 5.933 17 Si 0.967 3.033 18 H -0.282 1.282 19 H -0.291 1.291 20 H -0.269 1.269 21 C 0.188 3.812 22 C -0.126 4.126 23 C -0.139 4.139 24 C -0.171 4.171 25 C -0.178 4.178 26 C -0.118 4.118 27 C -0.127 4.127 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.135 0.865 32 H 0.125 0.875 33 H 0.343 0.657 34 H 0.025 0.975 35 H 0.056 0.944 36 H 0.070 0.930 37 H 0.006 0.994 38 H 0.054 0.946 39 H 0.251 0.749 40 H -0.008 1.008 41 H 0.043 0.957 42 H 0.062 0.938 43 H 0.058 0.942 44 H 0.110 0.890 45 H 0.091 0.909 46 H 0.104 0.896 47 H 0.091 0.909 48 H 0.097 0.903 49 H 0.125 0.875 50 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.434 2.106 -21.465 23.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.099 4.099 3 C -0.145 4.145 4 C -0.141 4.141 5 C -0.114 4.114 6 C 0.050 3.950 7 H 0.095 0.905 8 N -0.302 5.302 9 C 0.003 3.997 10 C -0.142 4.142 11 C 0.016 3.984 12 N -0.331 5.331 13 C -0.401 4.401 14 H 0.079 0.921 15 C -0.240 4.240 16 N -0.578 5.578 17 Si 0.794 3.206 18 H -0.209 1.209 19 H -0.217 1.217 20 H -0.194 1.194 21 C 0.062 3.938 22 C -0.165 4.165 23 C -0.157 4.157 24 C -0.209 4.209 25 C -0.215 4.215 26 C -0.136 4.136 27 C -0.145 4.145 28 H 0.099 0.901 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.153 0.847 32 H 0.143 0.857 33 H 0.164 0.836 34 H 0.043 0.957 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.024 0.976 38 H 0.072 0.928 39 H 0.060 0.940 40 H 0.010 0.990 41 H 0.061 0.939 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.128 0.872 45 H 0.109 0.891 46 H 0.123 0.877 47 H 0.109 0.891 48 H 0.116 0.884 49 H 0.143 0.857 50 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.830 2.168 -21.453 23.300 hybrid contribution -0.514 -0.280 1.436 1.550 sum -9.344 1.888 -20.017 22.171 Atomic orbital electron populations 1.20819 0.89642 1.03355 1.03055 1.20242 0.97401 0.93035 0.99269 1.21262 0.94073 0.98419 1.00781 1.21205 0.94731 0.97736 1.00477 1.20582 0.96764 0.93796 1.00295 1.20053 0.87653 0.95172 0.92098 0.90517 1.60719 1.56158 1.07315 1.05985 1.21141 0.96200 0.95304 0.87033 1.21818 0.96854 0.99704 0.95801 1.21059 0.98096 0.89403 0.89853 1.44226 1.22781 1.33512 1.32621 1.19434 0.89113 1.40248 0.91296 0.92064 1.25959 0.97615 1.02124 0.98255 1.70191 1.15306 1.49094 1.23185 0.85300 0.78441 0.78125 0.78711 1.20893 1.21691 1.19420 1.20384 0.86829 0.93877 0.92747 1.22148 1.00702 0.97579 0.96080 1.22185 1.00347 1.04397 0.88791 1.22974 1.03453 0.93017 1.01409 1.23130 0.97552 0.99743 1.01070 1.21025 0.94603 0.97715 1.00268 1.21244 0.94005 0.98434 1.00776 0.90088 0.91058 0.91057 0.84728 0.85712 0.83590 0.95707 0.92495 0.91196 0.97560 0.92765 0.94041 0.99011 0.93859 0.91899 0.92296 0.87230 0.89093 0.87748 0.89094 0.88425 0.85695 0.84691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.58 10.01 71.24 0.71 -0.87 16 2 C -0.10 -1.95 5.88 -19.87 -0.12 -2.07 16 3 C -0.13 -2.60 9.70 22.27 0.22 -2.38 16 4 C -0.12 -2.74 9.66 22.27 0.22 -2.52 16 5 C -0.11 -2.60 3.00 -19.87 -0.06 -2.66 16 6 C 0.16 3.82 2.40 44.17 0.11 3.93 16 7 H 0.08 1.99 7.09 -2.39 -0.02 1.97 16 8 N -0.67 -18.35 6.05 -473.16 -2.86 -21.21 16 9 C 0.11 3.83 2.25 44.94 0.10 3.93 16 10 C -0.10 -3.66 5.59 30.67 0.17 -3.48 16 11 C 0.14 6.22 6.52 86.36 0.56 6.78 16 12 N -0.61 -31.80 2.96 -699.11 -2.07 -33.87 16 13 C -0.27 -15.39 9.51 84.03 0.80 -14.59 16 14 H 0.06 3.41 7.88 -2.91 -0.02 3.39 16 15 C -0.04 -2.48 4.89 84.86 0.41 -2.06 16 16 N -0.93 -56.49 11.62 21.65 0.25 -56.24 16 17 Si 0.97 45.53 29.58 68.60 2.03 47.56 16 18 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 19 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 20 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 21 C 0.19 9.38 5.27 86.36 0.45 9.84 16 22 C -0.13 -4.85 5.34 30.67 0.16 -4.69 16 23 C -0.14 -2.85 6.00 -10.77 -0.06 -2.91 16 24 C -0.17 -2.99 10.13 30.59 0.31 -2.68 16 25 C -0.18 -3.25 9.44 30.62 0.29 -2.96 16 26 C -0.12 -2.60 7.69 22.27 0.17 -2.43 16 27 C -0.13 -2.59 9.70 22.27 0.22 -2.37 16 28 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.07 0.93 8.09 -2.39 -0.02 0.91 16 30 H 0.07 0.92 8.09 -2.38 -0.02 0.90 16 31 H 0.13 2.21 8.06 -2.91 -0.02 2.18 16 32 H 0.12 2.52 8.04 -2.91 -0.02 2.50 16 33 H 0.34 8.88 5.91 -89.69 -0.53 8.35 16 34 H 0.02 0.92 7.66 -2.39 -0.02 0.90 16 35 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.07 2.18 7.55 -2.39 -0.02 2.16 16 37 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 38 H 0.05 2.33 7.93 -2.39 -0.02 2.31 16 39 H 0.25 14.62 8.31 -92.70 -0.77 13.85 16 40 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 41 H 0.04 2.41 6.53 -2.39 -0.02 2.39 16 42 H 0.06 2.17 8.10 -2.39 -0.02 2.15 16 43 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 44 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 45 H 0.09 1.59 8.13 -2.39 -0.02 1.57 16 46 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 47 H 0.09 1.83 5.65 -2.39 -0.01 1.82 16 48 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 49 H 0.13 2.58 6.53 -2.91 -0.02 2.56 16 50 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -64.28 387.27 2.39 -61.89 By element: Atomic # 1 Polarization: 25.69 SS G_CDS: 0.37 Total: 26.06 kcal Atomic # 6 Polarization: -28.86 SS G_CDS: 4.66 Total: -24.19 kcal Atomic # 7 Polarization: -106.64 SS G_CDS: -4.68 Total: -111.32 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -64.28 2.39 -61.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611366205.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.032 kcal (2) G-P(sol) polarization free energy of solvation -64.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds