Wall clock time and date at job start Tue Mar 31 2020 11:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38250 * 120.03719 * 2 1 4 4 C 1.38102 * 119.94086 * 179.97438 * 3 2 1 5 5 C 1.38502 * 120.21399 * 359.96110 * 4 3 2 6 6 C 1.38217 * 119.84749 * 0.04618 * 5 4 3 7 7 C 1.38106 * 120.03449 * 179.97438 * 2 1 3 8 8 C 1.51364 * 109.76173 * 180.02562 * 6 5 4 9 9 H 1.08996 * 110.39189 * 136.15687 * 8 6 5 10 10 N 1.46894 * 110.30691 * 258.27462 * 8 6 5 11 11 C 1.46897 * 111.00544 * 202.45473 * 10 8 6 12 12 C 1.53045 * 109.46012 * 86.59369 * 11 10 8 13 13 C 1.53198 * 109.31163 * 181.39106 * 12 11 10 14 14 N 1.46919 * 108.77453 * 305.36185 * 13 12 11 15 15 C 1.36934 * 120.63365 * 233.58697 * 14 13 12 16 16 H 1.08005 * 119.99639 * 31.12457 * 15 14 13 17 17 C 1.38810 * 120.00232 * 211.12338 * 15 14 13 18 18 N 1.31620 * 120.00008 * 15.23201 * 17 15 14 19 19 Si 1.86803 * 120.00012 * 195.22912 * 17 15 14 20 20 H 1.48500 * 109.46585 * 90.00373 * 19 17 15 21 21 H 1.48499 * 109.47248 * 209.99932 * 19 17 15 22 22 H 1.48499 * 109.47152 * 330.00680 * 19 17 15 23 23 C 1.46932 * 118.73826 * 53.61062 * 14 13 12 24 24 C 1.53038 * 109.46416 * 206.66448 * 11 10 8 25 25 C 1.54357 * 105.16711 * 17.19658 * 8 6 5 26 26 H 1.09007 * 110.82077 * 215.22801 * 25 8 6 27 27 C 1.52993 * 110.82314 * 91.87612 * 25 8 6 28 28 C 1.51371 * 130.39300 * 180.02562 * 5 4 3 29 29 H 1.09003 * 109.47277 * 270.02047 * 1 2 3 30 30 H 1.08998 * 109.47263 * 30.01829 * 1 2 3 31 31 H 1.09000 * 109.47686 * 150.01876 * 1 2 3 32 32 H 1.07998 * 120.02995 * 359.97438 * 3 2 1 33 33 H 1.07994 * 119.89384 * 180.02562 * 4 3 2 34 34 H 1.08004 * 119.89136 * 0.04462 * 7 2 1 35 35 H 1.00903 * 111.00536 * 78.49490 * 10 8 6 36 36 H 1.09003 * 109.46099 * 326.63730 * 11 10 8 37 37 H 1.08990 * 109.49868 * 61.43890 * 12 11 10 38 38 H 1.08999 * 109.49593 * 301.33923 * 12 11 10 39 39 H 1.09003 * 109.58195 * 185.57630 * 13 12 11 40 40 H 1.08995 * 109.58819 * 65.15193 * 13 12 11 41 41 H 0.96996 * 119.99984 * 179.97438 * 18 17 15 42 42 H 1.08999 * 109.58214 * 66.17792 * 23 14 13 43 43 H 1.08999 * 109.58404 * 186.60137 * 23 14 13 44 44 H 1.09000 * 109.49649 * 58.66248 * 24 11 10 45 45 H 1.09003 * 109.49376 * 298.56414 * 24 11 10 46 46 H 1.09004 * 109.47361 * 59.99840 * 27 25 8 47 47 H 1.08999 * 109.47563 * 179.97438 * 27 25 8 48 48 H 1.09005 * 109.47084 * 300.00145 * 27 25 8 49 49 H 1.08994 * 110.30493 * 43.87017 * 28 5 4 50 50 H 1.08999 * 110.38658 * 281.75758 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1989 1.1968 0.0000 4 6 3.5799 1.1945 0.0005 5 6 4.2749 -0.0035 0.0019 6 6 3.5831 -1.2001 0.0017 7 6 2.1981 -1.1956 0.0005 8 6 4.5602 -2.3562 0.0040 9 1 4.2415 -3.1214 0.7118 10 7 4.6774 -2.9272 -1.3443 11 6 5.1624 -4.3127 -1.2890 12 6 3.9760 -5.2612 -1.1024 13 6 4.4887 -6.7019 -1.0103 14 7 5.3096 -6.9882 -2.1947 15 6 5.0429 -8.0764 -2.9820 16 1 4.0284 -8.4322 -3.0857 17 6 6.0763 -8.7221 -3.6468 18 7 7.3254 -8.4948 -3.3000 19 14 5.6941 -9.9139 -5.0335 20 1 5.6573 -9.1777 -6.3227 21 1 6.7461 -10.9604 -5.0910 22 1 4.3750 -10.5508 -4.7895 23 6 6.4225 -6.0851 -2.5180 24 6 5.8882 -4.6513 -2.5931 25 6 5.9072 -1.7456 0.4460 26 1 6.7386 -2.2284 -0.0677 27 6 6.0773 -1.8443 1.9632 28 6 5.7643 -0.2735 0.0032 29 1 -0.3634 0.0004 1.0277 30 1 -0.3634 0.8898 -0.5141 31 1 -0.3634 -0.8901 -0.5135 32 1 1.6600 2.1328 -0.0004 33 1 4.1198 2.1299 0.0010 34 1 1.6569 -2.1303 0.0002 35 1 5.2730 -2.3586 -1.9274 36 1 5.8508 -4.4233 -0.4511 37 1 3.2996 -5.1694 -1.9521 38 1 3.4458 -5.0045 -0.1853 39 1 3.6432 -7.3891 -0.9768 40 1 5.0925 -6.8181 -0.1104 41 1 8.0475 -8.9463 -3.7642 42 1 7.1841 -6.1510 -1.7410 43 1 6.8531 -6.3654 -3.4793 44 1 6.7190 -3.9605 -2.7371 45 1 5.1937 -4.5652 -3.4288 46 1 6.0508 -2.8916 2.2645 47 1 7.0339 -1.4081 2.2508 48 1 5.2685 -1.3041 2.4555 49 1 6.2674 0.3846 0.7116 50 1 6.1759 -0.1371 -0.9968 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611519310.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:05 Heat of formation + Delta-G solvation = 30.261110 kcal Electronic energy + Delta-G solvation = -26682.781458 eV Core-core repulsion = 23288.037193 eV Total energy + Delta-G solvation = -3394.744265 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.58132 -38.08312 -36.75764 -34.21226 -32.32368 -31.69536 -30.94670 -29.91016 -28.98401 -28.47713 -25.72717 -25.18711 -24.13697 -22.24996 -21.95008 -21.32033 -20.43113 -19.75481 -19.00909 -16.81057 -16.25522 -15.56466 -15.36050 -15.07005 -14.79381 -14.54812 -14.18983 -13.89493 -13.76358 -13.46732 -13.42679 -13.30326 -13.00536 -12.74128 -12.52527 -12.34757 -12.19490 -12.10177 -12.03497 -11.47461 -11.37108 -11.21521 -11.07896 -10.99107 -10.92450 -10.74729 -10.70474 -10.55851 -10.27554 -10.16548 -9.92027 -9.57214 -9.44101 -8.78354 -8.45410 -8.41270 -8.10131 -6.59755 -5.76606 -3.21713 1.30536 1.39109 3.39584 3.46275 3.47634 3.65963 4.23783 4.41115 4.51997 4.56853 4.80454 4.87376 4.94763 4.98519 5.06963 5.31066 5.37339 5.41256 5.45127 5.46791 5.47071 5.50751 5.54216 5.59396 5.70637 5.71831 5.73501 5.79233 5.87130 5.93206 5.97197 6.07298 6.13814 6.18507 6.21245 6.37871 6.40885 6.52632 6.56769 6.58969 6.66239 6.67948 6.71088 6.86924 6.99262 7.08682 7.38496 7.39872 7.64486 7.68536 7.83221 8.50146 9.24860 9.87455 10.46321 11.32099 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.020549 B = 0.003017 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.268094 B = 9279.096663 C =10000.982356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.093 4.093 3 C -0.122 4.122 4 C -0.110 4.110 5 C -0.099 4.099 6 C -0.068 4.068 7 C -0.089 4.089 8 C 0.129 3.871 9 H 0.086 0.914 10 N -0.675 5.675 11 C 0.098 3.902 12 C -0.116 4.116 13 C 0.145 3.855 14 N -0.591 5.591 15 C -0.252 4.252 16 H 0.064 0.936 17 C 0.004 3.996 18 N -0.904 5.904 19 Si 0.902 3.098 20 H -0.287 1.287 21 H -0.291 1.291 22 H -0.279 1.279 23 C 0.177 3.823 24 C -0.142 4.142 25 C -0.124 4.124 26 H 0.083 0.917 27 C -0.139 4.139 28 C -0.076 4.076 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.119 0.881 33 H 0.115 0.885 34 H 0.119 0.881 35 H 0.338 0.662 36 H 0.038 0.962 37 H 0.063 0.937 38 H 0.044 0.956 39 H 0.054 0.946 40 H 0.014 0.986 41 H 0.253 0.747 42 H 0.016 0.984 43 H 0.083 0.917 44 H 0.044 0.956 45 H 0.062 0.938 46 H 0.058 0.942 47 H 0.055 0.945 48 H 0.055 0.945 49 H 0.073 0.927 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.605 19.847 9.075 22.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.093 4.093 3 C -0.140 4.140 4 C -0.128 4.128 5 C -0.099 4.099 6 C -0.069 4.069 7 C -0.107 4.107 8 C 0.019 3.981 9 H 0.104 0.896 10 N -0.304 5.304 11 C -0.011 4.011 12 C -0.156 4.156 13 C 0.018 3.982 14 N -0.314 5.314 15 C -0.382 4.382 16 H 0.082 0.918 17 C -0.195 4.195 18 N -0.548 5.548 19 Si 0.732 3.268 20 H -0.214 1.214 21 H -0.218 1.218 22 H -0.204 1.204 23 C 0.051 3.949 24 C -0.181 4.181 25 C -0.144 4.144 26 H 0.102 0.898 27 C -0.197 4.197 28 C -0.113 4.113 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.137 0.863 33 H 0.133 0.867 34 H 0.137 0.863 35 H 0.156 0.844 36 H 0.056 0.944 37 H 0.082 0.918 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.032 0.968 41 H 0.063 0.937 42 H 0.034 0.966 43 H 0.102 0.898 44 H 0.063 0.937 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.074 0.926 48 H 0.075 0.925 49 H 0.091 0.909 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.120 19.538 8.955 22.641 hybrid contribution 0.861 -0.357 -0.545 1.079 sum -6.259 19.181 8.411 21.859 Atomic orbital electron populations 1.20753 0.91293 1.02717 1.02072 1.19779 0.95892 0.92982 1.00653 1.20844 0.93796 0.97361 1.02019 1.20522 0.93865 0.96802 1.01595 1.20558 0.95751 0.93375 1.00249 1.20424 0.93339 0.94761 0.98359 1.20514 0.92939 0.97505 0.99773 1.21068 0.91283 0.93990 0.91742 0.89565 1.60587 1.56542 1.03393 1.09908 1.21480 0.95480 0.86395 0.97745 1.22014 0.97012 0.96175 1.00406 1.20932 0.94421 0.92906 0.89930 1.44009 1.34224 1.27150 1.25995 1.19183 0.92175 1.05095 1.21734 0.91844 1.25124 0.95480 0.98066 1.00828 1.70019 0.98159 1.45352 1.41268 0.86288 0.77410 0.80525 0.82536 1.21428 1.21780 1.20388 1.20678 0.88932 0.84411 1.00926 1.22419 0.98678 1.00555 0.96479 1.22582 0.98703 0.95791 0.97327 0.89821 1.21729 1.01530 1.02035 0.94392 1.21091 0.92101 0.96396 1.01711 0.91432 0.91768 0.91469 0.86330 0.86669 0.86257 0.84369 0.94428 0.91837 0.93684 0.92784 0.96827 0.93683 0.96553 0.89833 0.93731 0.91877 0.92269 0.92563 0.92547 0.90865 0.90413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 10.01 36.00 0.36 -0.57 16 2 C -0.09 -1.01 5.88 -104.67 -0.62 -1.63 16 3 C -0.12 -1.25 9.70 -39.63 -0.38 -1.64 16 4 C -0.11 -1.16 10.04 -39.53 -0.40 -1.56 16 5 C -0.10 -1.14 6.14 -104.20 -0.64 -1.78 16 6 C -0.07 -0.87 5.77 -104.21 -0.60 -1.47 16 7 C -0.09 -1.10 9.70 -39.53 -0.38 -1.49 16 8 C 0.13 1.66 2.49 -67.83 -0.17 1.49 16 9 H 0.09 1.19 7.07 -51.93 -0.37 0.82 16 10 N -0.67 -9.84 6.08 -99.82 -0.61 -10.45 16 11 C 0.10 1.65 2.27 -67.67 -0.15 1.50 16 12 C -0.12 -2.11 5.59 -26.61 -0.15 -2.26 16 13 C 0.15 3.11 6.52 -3.71 -0.02 3.09 16 14 N -0.59 -14.99 2.98 -172.32 -0.51 -15.50 16 15 C -0.25 -7.01 9.56 -15.06 -0.14 -7.15 16 16 H 0.06 1.74 7.88 -52.48 -0.41 1.33 16 17 C 0.00 0.10 4.93 -17.43 -0.09 0.02 16 18 N -0.90 -26.39 11.31 55.49 0.63 -25.76 16 19 Si 0.90 21.88 29.58 -169.99 -5.03 16.85 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 23 C 0.18 4.22 5.27 -3.71 -0.02 4.20 16 24 C -0.14 -2.70 5.34 -26.61 -0.14 -2.84 16 25 C -0.12 -1.37 2.96 -89.19 -0.26 -1.64 16 26 H 0.08 0.98 8.04 -51.93 -0.42 0.56 16 27 C -0.14 -1.40 9.11 37.15 0.34 -1.06 16 28 C -0.08 -0.78 6.29 -26.83 -0.17 -0.94 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 31 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 32 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 33 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.12 1.45 8.06 -52.48 -0.42 1.03 16 35 H 0.34 4.74 8.05 -39.29 -0.32 4.42 16 36 H 0.04 0.66 7.72 -51.93 -0.40 0.26 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.04 0.73 7.56 -51.93 -0.39 0.34 16 39 H 0.05 1.14 7.93 -51.93 -0.41 0.73 16 40 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.08 2.23 6.24 -51.93 -0.32 1.91 16 44 H 0.04 0.76 8.10 -51.93 -0.42 0.33 16 45 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 46 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.07 0.66 7.91 -51.93 -0.41 0.25 16 50 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 387.28 15.07 5.84 5.84 Total: -1.00 -29.56 387.28 -12.25 -41.81 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -8.92 Total: 2.95 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: -3.64 Total: -15.73 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: -0.49 Total: -51.71 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -29.56 -12.25 -41.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611519310.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.069 kcal (2) G-P(sol) polarization free energy of solvation -29.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds